Wall clock time and date at job start Wed Apr 1 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47304 * 132.94926 * 3 2 1 5 5 C 1.35897 * 117.00574 * 180.02562 * 4 3 2 6 6 C 1.38819 * 120.01250 * 359.72343 * 5 4 3 7 7 C 1.38180 * 120.09257 * 179.72543 * 6 5 4 8 8 C 1.38155 * 120.13238 * 0.54989 * 7 6 5 9 9 C 1.38945 * 120.03186 * 359.72596 * 8 7 6 10 10 N 1.39723 * 120.04804 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99822 * 213.34153 * 10 9 8 12 12 O 1.21372 * 120.00282 * 5.27410 * 11 10 9 13 13 C 1.49347 * 119.99849 * 185.27921 * 11 10 9 14 14 O 1.21366 * 119.99895 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00364 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00434 * 179.97438 * 15 13 11 17 17 C 1.50699 * 109.47029 * 179.97438 * 16 15 13 18 18 O 1.21297 * 120.00439 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99690 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99703 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00052 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99615 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99841 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00168 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46878 * 89.99816 * 24 22 20 26 26 H 1.48503 * 109.47034 * 209.99327 * 24 22 20 27 27 H 1.48499 * 109.47211 * 329.99900 * 24 22 20 28 28 C 1.38564 * 120.02212 * 179.97438 * 5 4 3 29 29 H 4.38447 * 5.44454 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47299 * 252.94632 * 3 2 1 31 31 H 1.09004 * 109.47724 * 12.94682 * 3 2 1 32 32 H 1.07996 * 119.95684 * 359.97438 * 6 5 4 33 33 H 1.08006 * 119.93650 * 180.27676 * 7 6 5 34 34 H 1.07997 * 119.98238 * 179.74880 * 8 7 6 35 35 H 0.97002 * 119.99951 * 33.34418 * 10 9 8 36 36 H 0.97006 * 120.00040 * 359.97438 * 15 13 11 37 37 H 1.08997 * 109.46483 * 299.99621 * 16 15 13 38 38 H 1.08993 * 109.46880 * 60.00012 * 16 15 13 39 39 H 0.96994 * 119.99924 * 0.02562 * 19 17 16 40 40 H 0.97003 * 120.00202 * 180.02562 * 23 22 20 41 41 H 1.07999 * 120.06134 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1219 0.9188 -0.9862 5 6 4.4691 1.0404 -1.1169 6 6 5.3154 0.2948 -0.3077 7 6 6.6854 0.4129 -0.4431 8 6 7.2178 1.2816 -1.3762 9 6 6.3757 2.0348 -2.1850 10 7 6.9137 2.9130 -3.1292 11 6 6.2736 4.0623 -3.4221 12 8 5.2820 4.3806 -2.7987 13 6 6.7843 4.9442 -4.5138 14 8 7.7760 4.6261 -5.1369 15 7 6.1446 6.0937 -4.8065 16 6 6.6459 6.9591 -5.8770 17 6 5.7578 8.1703 -6.0012 18 8 4.8006 8.2984 -5.2674 19 7 6.0279 9.1118 -6.9271 20 6 5.2202 10.2140 -7.0397 21 1 4.3680 10.3280 -6.3863 22 6 5.4983 11.1843 -7.9946 23 7 4.7239 12.2405 -8.1029 24 14 6.9721 10.9867 -9.1253 25 1 6.5617 10.2536 -10.3498 26 1 7.4909 12.3265 -9.5010 27 1 8.0352 10.2229 -8.4241 28 6 4.9987 1.9126 -2.0544 29 1 -1.0502 -0.0001 0.0003 30 1 3.0092 0.3022 0.9825 31 1 3.0098 -1.0007 -0.2302 32 1 4.9024 -0.3816 0.4260 33 1 7.3415 -0.1718 0.1847 34 1 8.2889 1.3750 -1.4772 35 1 7.7479 2.6956 -3.5739 36 1 5.3521 6.3482 -4.3082 37 1 7.6621 7.2757 -5.6423 38 1 6.6446 6.4101 -6.8186 39 1 6.7935 9.0095 -7.5137 40 1 4.9178 12.9177 -8.7698 41 1 4.3418 2.4961 -2.6823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807401062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:03 Heat of formation + Delta-G solvation = -39.413921 kcal Electronic energy + Delta-G solvation = -27637.439618 eV Core-core repulsion = 23292.529012 eV Total energy + Delta-G solvation = -4344.910606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31160 -40.33078 -39.20732 -38.32407 -37.72166 -35.33699 -34.50690 -33.88212 -33.77001 -31.85078 -30.93967 -29.87854 -28.49305 -27.85535 -25.42065 -24.11761 -23.06612 -22.09336 -20.45482 -19.84011 -19.30210 -18.92382 -18.82222 -18.08709 -17.02822 -16.55981 -16.44348 -16.37798 -16.14347 -15.94564 -15.50120 -15.35019 -14.99860 -14.85467 -14.26863 -14.14607 -13.91764 -13.67497 -13.40606 -13.29965 -13.20101 -12.58723 -12.33264 -12.24640 -12.24115 -12.15414 -11.93731 -11.49873 -11.27449 -11.01396 -10.76242 -10.67981 -10.55226 -10.09633 -9.79597 -9.74293 -9.22548 -8.84685 -8.78429 -8.45899 -8.34781 -6.43806 -3.96887 0.70106 1.07773 1.41544 1.81695 2.11064 2.31323 2.95779 3.00421 3.01519 3.09676 3.16510 3.44602 3.47846 3.49341 3.92688 4.00131 4.29913 4.40433 4.46068 4.58413 4.69334 4.76175 4.80643 4.95574 5.09613 5.14407 5.38793 5.39748 5.49968 5.63185 5.64034 5.79822 5.85085 5.97207 6.05958 6.17836 6.38456 6.73596 7.00490 7.07389 7.24038 7.40888 7.56249 7.85896 7.98988 8.40158 8.78043 9.25170 9.57469 10.68147 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.001836 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.878734 B =15250.786537 C =16765.423681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.205 4.205 3 C 0.174 3.826 4 O -0.306 6.306 5 C 0.151 3.849 6 C -0.224 4.224 7 C -0.059 4.059 8 C -0.176 4.176 9 C 0.187 3.813 10 N -0.648 5.648 11 C 0.510 3.490 12 O -0.484 6.484 13 C 0.509 3.491 14 O -0.527 6.527 15 N -0.670 5.670 16 C 0.103 3.897 17 C 0.434 3.566 18 O -0.573 6.573 19 N -0.573 5.573 20 C -0.311 4.311 21 H 0.123 0.877 22 C 0.046 3.954 23 N -0.872 5.872 24 Si 0.880 3.120 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.267 1.267 28 C -0.153 4.153 29 H 0.225 0.775 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.426 0.574 36 H 0.426 0.574 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.375 0.625 40 H 0.276 0.724 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 -27.583 14.053 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.205 4.205 3 C 0.100 3.900 4 O -0.220 6.220 5 C 0.105 3.895 6 C -0.244 4.244 7 C -0.077 4.077 8 C -0.197 4.197 9 C 0.092 3.908 10 N -0.295 5.295 11 C 0.292 3.708 12 O -0.356 6.356 13 C 0.288 3.712 14 O -0.405 6.405 15 N -0.325 5.325 16 C -0.024 4.024 17 C 0.220 3.780 18 O -0.457 6.457 19 N -0.211 5.211 20 C -0.439 4.439 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.511 5.511 24 Si 0.706 3.294 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.192 1.192 28 C -0.174 4.174 29 H 0.242 0.758 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.264 0.736 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.208 0.792 40 H 0.087 0.913 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.567 -27.060 14.258 30.793 hybrid contribution 1.074 -0.015 -0.851 1.370 sum 4.641 -27.074 13.407 30.566 Atomic orbital electron populations 1.25067 0.95919 0.98170 0.97905 1.22232 0.93553 1.02279 1.02410 1.19271 0.85071 0.93465 0.92182 1.86148 1.19289 1.60467 1.56109 1.18615 0.81804 0.94505 0.94597 1.21240 0.94452 1.04893 1.03779 1.20700 0.94218 0.96456 0.96369 1.20844 0.99685 1.01111 0.98057 1.17320 0.91589 0.91236 0.90621 1.43133 1.27256 1.18656 1.40491 1.20370 0.84227 0.81926 0.84320 1.90852 1.24133 1.71607 1.49013 1.19658 0.84486 0.82642 0.84421 1.90768 1.25134 1.72895 1.51698 1.45494 1.31445 1.19517 1.36041 1.21165 0.98507 0.91521 0.91208 1.19516 0.88234 0.85310 0.84950 1.90588 1.31139 1.78416 1.45583 1.42096 1.27009 1.20220 1.31765 1.19455 1.09599 0.95870 1.19008 0.85982 1.25078 0.97907 0.95398 0.97516 1.69620 1.37482 1.09545 1.34407 0.86661 0.82305 0.78915 0.81530 1.19365 1.19943 1.19242 1.20312 0.93847 1.01456 1.01747 0.75791 0.89388 0.89431 0.85179 0.85014 0.85079 0.73579 0.73368 0.88865 0.88865 0.79219 0.91318 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 19.25 29.55 0.57 -0.56 16 2 C -0.20 -1.80 13.73 -37.12 -0.51 -2.31 16 3 C 0.17 1.31 5.21 34.37 0.18 1.49 16 4 O -0.31 -3.41 10.09 -19.42 -0.20 -3.61 16 5 C 0.15 1.60 6.68 -39.25 -0.26 1.33 16 6 C -0.22 -1.73 9.04 -39.39 -0.36 -2.08 16 7 C -0.06 -0.40 10.03 -39.63 -0.40 -0.80 16 8 C -0.18 -1.40 9.96 -39.35 -0.39 -1.80 16 9 C 0.19 1.97 6.27 -83.77 -0.53 1.45 16 10 N -0.65 -6.82 5.32 -10.31 -0.05 -6.88 16 11 C 0.51 6.87 7.62 -11.63 -0.09 6.78 16 12 O -0.48 -7.74 14.16 5.48 0.08 -7.66 16 13 C 0.51 7.37 7.89 -11.64 -0.09 7.28 16 14 O -0.53 -7.99 16.48 5.48 0.09 -7.90 16 15 N -0.67 -10.71 5.52 -61.95 -0.34 -11.05 16 16 C 0.10 1.68 6.15 -5.19 -0.03 1.65 16 17 C 0.43 9.36 7.85 -10.98 -0.09 9.28 16 18 O -0.57 -14.58 15.24 5.54 0.08 -14.49 16 19 N -0.57 -13.01 5.09 -10.96 -0.06 -13.07 16 20 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 22 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.70 13.96 55.50 0.77 -23.93 16 24 Si 0.88 18.62 27.74 -169.99 -4.71 13.91 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 28 C -0.15 -1.86 8.59 -39.23 -0.34 -2.19 16 29 H 0.23 0.81 7.80 -54.08 -0.42 0.39 16 30 H 0.09 0.49 7.65 -51.93 -0.40 0.09 16 31 H 0.09 0.45 7.67 -51.93 -0.40 0.05 16 32 H 0.13 0.64 6.29 -52.49 -0.33 0.31 16 33 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.43 3.52 8.30 -40.82 -0.34 3.18 16 36 H 0.43 7.36 6.91 -40.82 -0.28 7.08 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 40 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.15 2.04 6.42 -52.49 -0.34 1.71 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -34.61 373.17 -5.28 -39.88 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -3.99 Total: 17.19 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -2.58 Total: 11.99 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.32 Total: -54.93 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: 0.06 Total: -33.66 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.71 Total: 13.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.61 -5.28 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807401062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.471 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds