Wall clock time and date at job start Wed Apr 1 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47304 * 132.94926 * 3 2 1 5 5 C 1.35897 * 117.00574 * 180.02562 * 4 3 2 6 6 C 1.38819 * 120.01250 * 359.72343 * 5 4 3 7 7 C 1.38180 * 120.09257 * 179.72543 * 6 5 4 8 8 C 1.38155 * 120.13238 * 0.54989 * 7 6 5 9 9 C 1.38945 * 120.03186 * 359.72596 * 8 7 6 10 10 N 1.39723 * 120.04804 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99822 * 213.34153 * 10 9 8 12 12 O 1.21372 * 120.00282 * 5.27410 * 11 10 9 13 13 C 1.49347 * 119.99849 * 185.27921 * 11 10 9 14 14 O 1.21366 * 119.99895 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00364 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00434 * 179.97438 * 15 13 11 17 17 C 1.50699 * 109.47029 * 179.97438 * 16 15 13 18 18 O 1.21297 * 120.00439 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99690 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99703 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00052 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99615 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99841 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00168 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46878 * 89.99816 * 24 22 20 26 26 H 1.48503 * 109.47034 * 209.99327 * 24 22 20 27 27 H 1.48499 * 109.47211 * 329.99900 * 24 22 20 28 28 C 1.38564 * 120.02212 * 179.97438 * 5 4 3 29 29 H 4.38447 * 5.44454 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47299 * 252.94632 * 3 2 1 31 31 H 1.09004 * 109.47724 * 12.94682 * 3 2 1 32 32 H 1.07996 * 119.95684 * 359.97438 * 6 5 4 33 33 H 1.08006 * 119.93650 * 180.27676 * 7 6 5 34 34 H 1.07997 * 119.98238 * 179.74880 * 8 7 6 35 35 H 0.97002 * 119.99951 * 33.34418 * 10 9 8 36 36 H 0.97006 * 120.00040 * 359.97438 * 15 13 11 37 37 H 1.08997 * 109.46483 * 299.99621 * 16 15 13 38 38 H 1.08993 * 109.46880 * 60.00012 * 16 15 13 39 39 H 0.96994 * 119.99924 * 0.02562 * 19 17 16 40 40 H 0.97003 * 120.00202 * 180.02562 * 23 22 20 41 41 H 1.07999 * 120.06134 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1219 0.9188 -0.9862 5 6 4.4691 1.0404 -1.1169 6 6 5.3154 0.2948 -0.3077 7 6 6.6854 0.4129 -0.4431 8 6 7.2178 1.2816 -1.3762 9 6 6.3757 2.0348 -2.1850 10 7 6.9137 2.9130 -3.1292 11 6 6.2736 4.0623 -3.4221 12 8 5.2820 4.3806 -2.7987 13 6 6.7843 4.9442 -4.5138 14 8 7.7760 4.6261 -5.1369 15 7 6.1446 6.0937 -4.8065 16 6 6.6459 6.9591 -5.8770 17 6 5.7578 8.1703 -6.0012 18 8 4.8006 8.2984 -5.2674 19 7 6.0279 9.1118 -6.9271 20 6 5.2202 10.2140 -7.0397 21 1 4.3680 10.3280 -6.3863 22 6 5.4983 11.1843 -7.9946 23 7 4.7239 12.2405 -8.1029 24 14 6.9721 10.9867 -9.1253 25 1 6.5617 10.2536 -10.3498 26 1 7.4909 12.3265 -9.5010 27 1 8.0352 10.2229 -8.4241 28 6 4.9987 1.9126 -2.0544 29 1 -1.0502 -0.0001 0.0003 30 1 3.0092 0.3022 0.9825 31 1 3.0098 -1.0007 -0.2302 32 1 4.9024 -0.3816 0.4260 33 1 7.3415 -0.1718 0.1847 34 1 8.2889 1.3750 -1.4772 35 1 7.7479 2.6956 -3.5739 36 1 5.3521 6.3482 -4.3082 37 1 7.6621 7.2757 -5.6423 38 1 6.6446 6.4101 -6.8186 39 1 6.7935 9.0095 -7.5137 40 1 4.9178 12.9177 -8.7698 41 1 4.3418 2.4961 -2.6823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807401062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:02 Heat of formation + Delta-G solvation = -67.484601 kcal Electronic energy + Delta-G solvation = -27638.656854 eV Core-core repulsion = 23292.529012 eV Total energy + Delta-G solvation = -4346.127842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.29480 -41.20383 -40.55037 -39.74612 -38.57221 -36.52227 -36.01626 -35.25889 -34.40612 -33.85839 -31.63721 -30.66540 -29.87792 -28.45024 -26.93055 -25.49443 -23.83693 -22.91642 -21.55756 -21.50444 -20.74393 -20.06460 -19.51196 -19.27524 -18.15195 -17.48101 -17.42374 -17.14456 -17.06590 -17.04459 -16.77326 -16.71246 -16.33888 -16.20299 -15.49222 -15.27371 -14.93217 -14.74882 -14.53397 -14.35203 -14.12775 -14.07688 -13.97360 -13.67667 -13.05626 -12.97355 -12.92915 -12.76542 -12.45053 -12.25695 -11.99850 -11.63777 -11.59270 -11.51807 -11.14390 -10.90856 -10.70674 -10.48413 -10.32970 -9.55533 -9.14620 -8.46079 -6.09212 -0.18641 0.40363 0.49100 1.00964 1.25278 1.31340 1.34682 1.45385 1.72744 1.76091 1.93742 2.20841 2.31417 2.63575 2.75401 2.80073 3.09689 3.21889 3.41339 3.83473 3.93689 4.05125 4.13162 4.20045 4.28801 4.31094 4.33844 4.34549 4.48283 4.59734 4.89185 4.91977 5.15159 5.16278 5.26540 5.43077 5.46076 5.68239 5.80400 5.86296 6.15456 6.35665 6.45225 6.50003 6.53577 6.71892 6.76888 7.26206 7.76507 8.70418 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.001836 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.878734 B =15250.786537 C =16765.423681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.248 4.248 3 C 0.167 3.833 4 O -0.338 6.338 5 C 0.133 3.867 6 C -0.214 4.214 7 C -0.051 4.051 8 C -0.168 4.168 9 C 0.165 3.835 10 N -0.629 5.629 11 C 0.511 3.489 12 O -0.518 6.518 13 C 0.518 3.482 14 O -0.528 6.528 15 N -0.681 5.681 16 C 0.115 3.885 17 C 0.439 3.561 18 O -0.618 6.618 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.060 0.940 22 C -0.010 4.010 23 N -0.926 5.926 24 Si 0.963 3.037 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.227 1.227 28 C -0.184 4.184 29 H 0.254 0.746 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.437 0.563 36 H 0.418 0.582 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.394 0.606 40 H 0.282 0.718 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -30.753 14.337 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.248 4.248 3 C 0.094 3.906 4 O -0.253 6.253 5 C 0.088 3.912 6 C -0.233 4.233 7 C -0.069 4.069 8 C -0.188 4.188 9 C 0.071 3.929 10 N -0.277 5.277 11 C 0.293 3.707 12 O -0.393 6.393 13 C 0.298 3.702 14 O -0.405 6.405 15 N -0.335 5.335 16 C -0.011 4.011 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.078 0.922 22 C -0.210 4.210 23 N -0.566 5.566 24 Si 0.782 3.218 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.151 1.151 28 C -0.205 4.205 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.278 0.722 36 H 0.257 0.743 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.231 0.769 40 H 0.091 0.909 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.248 -30.293 14.547 34.378 hybrid contribution -0.195 0.854 -0.785 1.176 sum 7.053 -29.439 13.763 33.254 Atomic orbital electron populations 1.25944 0.96918 0.96941 0.96640 1.22902 0.94735 1.03517 1.03663 1.19594 0.84656 0.94048 0.92308 1.86094 1.19934 1.61748 1.57486 1.18778 0.82093 0.95163 0.95190 1.21629 0.94687 1.03976 1.03039 1.21219 0.94287 0.95650 0.95777 1.21216 1.00761 0.99893 0.96953 1.17526 0.91392 0.92222 0.91723 1.42990 1.27057 1.17516 1.40144 1.20207 0.83990 0.82555 0.83957 1.90853 1.25650 1.72530 1.50242 1.19688 0.84072 0.82093 0.84350 1.90761 1.25083 1.72859 1.51821 1.45556 1.31549 1.20199 1.36239 1.21154 0.97977 0.89173 0.92803 1.20521 0.87723 0.86010 0.83057 1.90579 1.33304 1.79555 1.46923 1.41863 1.27279 1.19343 1.32805 1.19020 1.09481 0.98504 1.19282 0.92195 1.26144 1.01741 0.94139 0.98967 1.69794 1.40170 1.10882 1.35729 0.85396 0.77994 0.79511 0.78880 1.18027 1.19940 1.15052 1.20262 0.94533 1.02770 1.02952 0.72935 0.87584 0.87094 0.82104 0.81022 0.82259 0.72201 0.74301 0.85917 0.85987 0.76935 0.90883 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 19.25 74.32 1.43 -0.68 16 2 C -0.25 -4.36 13.73 31.13 0.43 -3.94 16 3 C 0.17 2.42 5.21 70.18 0.37 2.78 16 4 O -0.34 -7.82 10.09 -92.39 -0.93 -8.75 16 5 C 0.13 2.83 6.68 22.49 0.15 2.98 16 6 C -0.21 -2.75 9.04 22.39 0.20 -2.55 16 7 C -0.05 -0.50 10.03 22.24 0.22 -0.28 16 8 C -0.17 -2.18 9.96 22.42 0.22 -1.96 16 9 C 0.17 3.38 6.27 38.20 0.24 3.62 16 10 N -0.63 -12.81 5.32 -304.89 -1.62 -14.44 16 11 C 0.51 13.93 7.62 87.24 0.66 14.60 16 12 O -0.52 -17.55 14.16 -3.32 -0.05 -17.59 16 13 C 0.52 14.53 7.89 87.24 0.69 15.22 16 14 O -0.53 -14.75 16.48 -3.30 -0.05 -14.80 16 15 N -0.68 -21.47 5.52 -468.25 -2.59 -24.05 16 16 C 0.12 3.52 6.15 85.63 0.53 4.05 16 17 C 0.44 19.01 7.85 87.66 0.69 19.70 16 18 O -0.62 -32.84 15.24 -3.08 -0.05 -32.88 16 19 N -0.57 -25.84 5.09 -306.98 -1.56 -27.40 16 20 C -0.33 -18.96 10.16 84.04 0.85 -18.11 16 21 H 0.06 4.07 7.39 -2.91 -0.02 4.04 16 22 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 23 N -0.93 -54.54 13.96 21.66 0.30 -54.24 16 24 Si 0.96 37.29 27.74 68.60 1.90 39.20 16 25 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 27 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 28 C -0.18 -4.70 8.59 22.50 0.19 -4.51 16 29 H 0.25 1.49 7.80 -4.41 -0.03 1.46 16 30 H 0.11 1.05 7.65 -2.39 -0.02 1.03 16 31 H 0.11 0.97 7.67 -2.39 -0.02 0.96 16 32 H 0.16 0.98 6.29 -2.91 -0.02 0.97 16 33 H 0.17 0.38 8.06 -2.91 -0.02 0.35 16 34 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.44 6.46 8.30 -92.71 -0.77 5.70 16 36 H 0.42 14.95 6.91 -92.70 -0.64 14.31 16 37 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.39 14.48 5.76 -92.71 -0.53 13.95 16 40 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.11 3.52 6.42 -2.91 -0.02 3.50 16 Total: -1.00 -83.30 373.17 1.83 -81.47 By element: Atomic # 1 Polarization: 43.49 SS G_CDS: -0.87 Total: 42.62 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 7.34 Total: 30.87 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -5.47 Total: -120.13 kcal Atomic # 8 Polarization: -72.95 SS G_CDS: -1.08 Total: -74.03 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.20 kcal Total: -83.30 1.83 -81.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807401062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.984 kcal (2) G-P(sol) polarization free energy of solvation -83.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds