Wall clock time and date at job start Wed Apr 1 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34406 * 119.79477 * 2 1 4 4 O 1.21854 * 118.47999 * 0.04160 * 3 2 1 5 5 N 1.33378 * 123.04702 * 180.02562 * 3 2 1 6 6 C 1.32223 * 121.59715 * 359.97438 * 5 3 2 7 7 O 1.34914 * 120.81096 * 180.02562 * 6 5 3 8 8 C 1.46757 * 118.37661 * 0.02562 * 6 5 3 9 9 C 1.39347 * 121.96725 * 180.26121 * 8 6 5 10 10 C 1.39867 * 117.75186 * 180.26717 * 9 8 6 11 11 C 1.47555 * 120.40627 * 179.73836 * 10 9 8 12 12 O 1.21493 * 119.99832 * 359.72668 * 11 10 9 13 13 O 1.34738 * 120.00038 * 179.72753 * 11 10 9 14 14 C 1.45200 * 116.99993 * 174.88570 * 13 11 10 15 15 C 1.50700 * 112.84648 * 65.09435 * 14 13 11 16 16 H 1.08007 * 119.99987 * 242.98945 * 15 14 13 17 17 C 1.37876 * 119.99915 * 62.99625 * 15 14 13 18 18 N 1.31509 * 120.00332 * 353.69517 * 17 15 14 19 19 Si 1.86798 * 119.99745 * 173.69792 * 17 15 14 20 20 H 1.48506 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47237 * 119.99839 * 19 17 15 22 22 H 1.48499 * 109.47129 * 239.99781 * 19 17 15 23 23 C 1.53784 * 113.61126 * 293.90115 * 14 13 11 24 24 C 1.53957 * 87.01662 * 220.04543 * 23 14 13 25 25 C 1.53773 * 113.61371 * 196.29367 * 14 13 11 26 26 C 1.40059 * 119.18564 * 359.47370 * 10 9 8 27 27 N 1.31491 * 121.40107 * 0.26518 * 26 10 9 28 28 C 1.32484 * 121.70406 * 0.02562 * 27 26 10 29 29 H 1.08997 * 109.47082 * 269.98245 * 1 2 3 30 30 H 1.09001 * 109.46955 * 29.98061 * 1 2 3 31 31 H 1.09001 * 109.47474 * 149.97895 * 1 2 3 32 32 H 0.96703 * 113.99806 * 359.97438 * 7 6 5 33 33 H 1.07997 * 121.12423 * 0.03664 * 9 8 6 34 34 H 0.96998 * 120.00410 * 185.01598 * 18 17 15 35 35 H 1.08997 * 113.61607 * 334.56704 * 23 14 13 36 36 H 1.08996 * 113.61482 * 105.47161 * 23 14 13 37 37 H 1.08995 * 113.54149 * 270.81236 * 24 23 14 38 38 H 1.09000 * 113.74249 * 139.93746 * 24 23 14 39 39 H 1.09000 * 113.61494 * 254.52820 * 25 14 13 40 40 H 1.08997 * 113.61634 * 25.34833 * 25 14 13 41 41 H 1.08006 * 119.29511 * 180.29583 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1328 1.1664 0.0000 4 8 1.4921 2.2029 0.0008 5 7 3.4645 1.2421 -0.0005 6 6 4.2200 0.1570 -0.0005 7 8 5.5658 0.2520 -0.0005 8 6 3.5589 -1.1533 -0.0006 9 6 4.2820 -2.3445 0.0048 10 6 3.5619 -3.5435 -0.0015 11 6 4.2683 -4.8389 -0.0021 12 8 5.4829 -4.8685 -0.0022 13 8 3.5665 -5.9891 -0.0027 14 6 4.3230 -7.2230 -0.1186 15 6 5.2210 -7.4722 1.0657 16 1 6.2921 -7.5103 0.9327 17 6 4.6751 -7.6517 2.3190 18 7 3.3841 -7.4830 2.5043 19 14 5.7694 -8.1344 3.7539 20 1 7.1729 -8.2613 3.2855 21 1 5.6914 -7.0917 4.8085 22 1 5.3137 -9.4344 4.3085 23 6 5.0312 -7.3862 -1.4738 24 6 4.6274 -8.8707 -1.4152 25 6 3.4642 -8.4379 -0.5071 26 6 2.1620 -3.4994 -0.0015 27 7 1.5125 -2.3561 -0.0010 28 6 2.1487 -1.1940 -0.0009 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 5.8959 1.1609 -0.0009 33 1 5.3620 -2.3419 0.0098 34 1 3.0111 -7.5376 3.3981 35 1 4.5545 -6.8357 -2.2848 36 1 6.1080 -7.2236 -1.4262 37 1 5.3610 -9.5020 -0.9140 38 1 4.3049 -9.2760 -2.3742 39 1 3.2776 -9.1231 0.3199 40 1 2.5574 -8.1754 -1.0520 41 1 1.6041 -4.4243 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:52 Heat of formation + Delta-G solvation = -53.842123 kcal Electronic energy + Delta-G solvation = -30142.643246 eV Core-core repulsion = 25797.106986 eV Total energy + Delta-G solvation = -4345.536260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16080 -39.95733 -39.18027 -39.05002 -37.22236 -35.97990 -35.08210 -34.40333 -32.71049 -32.40949 -30.95925 -27.72648 -26.38117 -25.50385 -25.08671 -24.67159 -23.14228 -22.81214 -21.38088 -20.15780 -19.66399 -18.69807 -18.10809 -17.10007 -16.94234 -16.77295 -16.19823 -15.79322 -15.60553 -15.20651 -14.99515 -14.95434 -14.73228 -14.60074 -14.08499 -13.86200 -13.69218 -13.31378 -13.25029 -13.18395 -12.58396 -12.38067 -11.72164 -11.27880 -11.20660 -11.12566 -11.07321 -10.95145 -10.79537 -10.59486 -10.50957 -10.34858 -10.09386 -10.04491 -9.94823 -9.89824 -9.55151 -8.95098 -8.72712 -8.68159 -8.62734 -6.23369 -4.34938 -0.06786 0.39879 1.31447 2.04111 2.48799 2.67083 3.16741 3.27323 3.32273 3.43335 3.50525 3.59576 3.87937 3.88594 4.26110 4.36301 4.44015 4.62772 4.84748 5.03994 5.08817 5.14221 5.21699 5.47327 5.55266 5.62502 5.66433 5.73666 5.81606 6.01625 6.06266 6.16084 6.30678 6.41124 6.51959 6.61172 6.79718 6.99717 7.16947 7.29178 7.40830 7.49440 7.62896 7.75080 7.80720 8.16581 8.68431 8.93162 9.35447 10.80992 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003069 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.813447 B = 9122.108272 C = 9351.042188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.534 5.534 3 C 0.676 3.324 4 O -0.520 6.520 5 N -0.611 5.611 6 C 0.494 3.506 7 O -0.430 6.430 8 C -0.240 4.240 9 C 0.079 3.921 10 C -0.197 4.197 11 C 0.512 3.488 12 O -0.498 6.498 13 O -0.338 6.338 14 C 0.241 3.759 15 C -0.513 4.513 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.861 5.861 19 Si 0.892 3.108 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.281 1.281 23 C -0.160 4.160 24 C -0.132 4.132 25 C -0.107 4.107 26 C 0.245 3.755 27 N -0.518 5.518 28 C 0.425 3.575 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.425 0.575 33 H 0.170 0.830 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 8.964 -6.134 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.259 5.259 3 C 0.377 3.623 4 O -0.393 6.393 5 N -0.366 5.366 6 C 0.285 3.715 7 O -0.224 6.224 8 C -0.249 4.249 9 C 0.052 3.948 10 C -0.202 4.202 11 C 0.353 3.647 12 O -0.387 6.387 13 O -0.254 6.254 14 C 0.208 3.792 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.497 5.497 19 Si 0.719 3.281 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.198 4.198 24 C -0.169 4.169 25 C -0.145 4.145 26 C 0.083 3.917 27 N -0.234 5.234 28 C 0.189 3.811 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.283 0.717 33 H 0.188 0.812 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.128 9.864 -6.005 11.964 hybrid contribution 1.345 -0.342 1.031 1.729 sum -1.783 9.522 -4.974 10.890 Atomic orbital electron populations 1.21985 0.75482 1.04962 1.03986 1.46021 1.10422 1.04145 1.65265 1.17008 0.84344 0.82641 0.78290 1.90961 1.65408 1.31010 1.51947 1.69511 1.05236 1.28355 1.33479 1.21566 0.84332 0.88279 0.77348 1.84936 1.14741 1.37508 1.85211 1.19159 0.92095 0.92854 1.20788 1.21793 1.01930 0.88392 0.82703 1.20671 0.94957 0.93816 1.10752 1.20056 0.85869 0.84354 0.74382 1.90769 1.14436 1.88202 1.45299 1.86535 1.43143 1.14755 1.80965 1.21304 0.88828 0.77372 0.91694 1.20993 0.93037 1.49588 0.91427 0.91194 1.25059 0.94959 0.93897 0.99007 1.70010 1.10987 1.46461 1.22202 0.86522 0.81145 0.78319 0.82073 1.19376 1.20882 1.20660 1.23579 1.01133 0.96306 0.98771 1.22561 0.99546 0.96240 0.98560 1.22909 0.95695 0.97633 0.98229 1.23559 0.91097 0.95206 0.81816 1.67430 1.38953 0.96362 1.20609 1.18458 0.86392 0.87516 0.88776 0.90837 0.89104 0.88611 0.71664 0.81213 0.92662 0.92128 0.91692 0.90159 0.92863 0.90598 0.92118 0.78969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.13 59.85 0.61 1.43 16 2 N -0.53 -7.13 3.03 -128.53 -0.39 -7.52 16 3 C 0.68 10.27 8.30 -88.49 -0.73 9.54 16 4 O -0.52 -9.16 16.59 5.05 0.08 -9.07 16 5 N -0.61 -8.32 10.35 -15.17 -0.16 -8.48 16 6 C 0.49 5.66 8.12 -13.94 -0.11 5.55 16 7 O -0.43 -3.48 13.07 -16.46 -0.22 -3.69 16 8 C -0.24 -3.08 5.88 -104.96 -0.62 -3.70 16 9 C 0.08 1.07 9.33 -38.56 -0.36 0.71 16 10 C -0.20 -3.10 5.89 -104.81 -0.62 -3.72 16 11 C 0.51 10.37 7.46 34.53 0.26 10.62 16 12 O -0.50 -11.24 14.91 -19.26 -0.29 -11.53 16 13 O -0.34 -7.43 9.03 -40.59 -0.37 -7.79 16 14 C 0.24 5.49 0.48 -90.96 -0.04 5.44 16 15 C -0.51 -13.10 7.01 -34.44 -0.24 -13.34 16 16 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 17 C 0.08 1.97 5.28 -17.82 -0.09 1.88 16 18 N -0.86 -22.43 12.74 55.43 0.71 -21.73 16 19 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.16 -3.18 6.65 -25.82 -0.17 -3.36 16 24 C -0.13 -2.39 7.81 -25.82 -0.20 -2.60 16 25 C -0.11 -2.20 7.26 -25.92 -0.19 -2.39 16 26 C 0.25 3.43 10.76 -17.01 -0.18 3.25 16 27 N -0.52 -6.96 9.21 -11.85 -0.11 -7.07 16 28 C 0.42 5.72 7.37 -155.56 -1.15 4.57 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.93 7.33 -51.93 -0.38 0.55 16 31 H 0.10 0.90 7.41 -51.93 -0.39 0.52 16 32 H 0.42 1.52 8.99 45.56 0.41 1.93 16 33 H 0.17 2.17 7.51 -52.49 -0.39 1.77 16 34 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.70 7.92 -51.93 -0.41 1.29 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.19 2.53 7.59 -52.48 -0.40 2.13 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.21 359.19 -7.83 -40.04 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.64 Total: 2.40 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: -3.85 Total: 13.89 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.05 Total: -44.80 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.79 Total: -32.08 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.21 -7.83 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.801 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds