Wall clock time and date at job start Wed Apr 1 2020 03:02:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.34406 * 119.79477 * 2 1
4 4 O 1.21854 * 118.47999 * 0.04160 * 3 2 1
5 5 N 1.33378 * 123.04702 * 180.02562 * 3 2 1
6 6 C 1.32223 * 121.59715 * 359.97438 * 5 3 2
7 7 O 1.34914 * 120.81096 * 180.02562 * 6 5 3
8 8 C 1.46757 * 118.37661 * 0.02562 * 6 5 3
9 9 C 1.39347 * 121.96725 * 180.26121 * 8 6 5
10 10 C 1.39867 * 117.75186 * 180.26717 * 9 8 6
11 11 C 1.47555 * 120.40627 * 179.73836 * 10 9 8
12 12 O 1.21493 * 119.99832 * 359.72668 * 11 10 9
13 13 O 1.34738 * 120.00038 * 179.72753 * 11 10 9
14 14 C 1.45200 * 116.99993 * 174.88570 * 13 11 10
15 15 C 1.50700 * 112.84648 * 65.09435 * 14 13 11
16 16 H 1.08007 * 119.99987 * 242.98945 * 15 14 13
17 17 C 1.37876 * 119.99915 * 62.99625 * 15 14 13
18 18 N 1.31509 * 120.00332 * 353.69517 * 17 15 14
19 19 Si 1.86798 * 119.99745 * 173.69792 * 17 15 14
20 20 H 1.48506 * 109.47485 * 359.97438 * 19 17 15
21 21 H 1.48500 * 109.47237 * 119.99839 * 19 17 15
22 22 H 1.48499 * 109.47129 * 239.99781 * 19 17 15
23 23 C 1.53784 * 113.61126 * 293.90115 * 14 13 11
24 24 C 1.53957 * 87.01662 * 220.04543 * 23 14 13
25 25 C 1.53773 * 113.61371 * 196.29367 * 14 13 11
26 26 C 1.40059 * 119.18564 * 359.47370 * 10 9 8
27 27 N 1.31491 * 121.40107 * 0.26518 * 26 10 9
28 28 C 1.32484 * 121.70406 * 0.02562 * 27 26 10
29 29 H 1.08997 * 109.47082 * 269.98245 * 1 2 3
30 30 H 1.09001 * 109.46955 * 29.98061 * 1 2 3
31 31 H 1.09001 * 109.47474 * 149.97895 * 1 2 3
32 32 H 0.96703 * 113.99806 * 359.97438 * 7 6 5
33 33 H 1.07997 * 121.12423 * 0.03664 * 9 8 6
34 34 H 0.96998 * 120.00410 * 185.01598 * 18 17 15
35 35 H 1.08997 * 113.61607 * 334.56704 * 23 14 13
36 36 H 1.08996 * 113.61482 * 105.47161 * 23 14 13
37 37 H 1.08995 * 113.54149 * 270.81236 * 24 23 14
38 38 H 1.09000 * 113.74249 * 139.93746 * 24 23 14
39 39 H 1.09000 * 113.61494 * 254.52820 * 25 14 13
40 40 H 1.08997 * 113.61634 * 25.34833 * 25 14 13
41 41 H 1.08006 * 119.29511 * 180.29583 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1328 1.1664 0.0000
4 8 1.4921 2.2029 0.0008
5 7 3.4645 1.2421 -0.0005
6 6 4.2200 0.1570 -0.0005
7 8 5.5658 0.2520 -0.0005
8 6 3.5589 -1.1533 -0.0006
9 6 4.2820 -2.3445 0.0048
10 6 3.5619 -3.5435 -0.0015
11 6 4.2683 -4.8389 -0.0021
12 8 5.4829 -4.8685 -0.0022
13 8 3.5665 -5.9891 -0.0027
14 6 4.3230 -7.2230 -0.1186
15 6 5.2210 -7.4722 1.0657
16 1 6.2921 -7.5103 0.9327
17 6 4.6751 -7.6517 2.3190
18 7 3.3841 -7.4830 2.5043
19 14 5.7694 -8.1344 3.7539
20 1 7.1729 -8.2613 3.2855
21 1 5.6914 -7.0917 4.8085
22 1 5.3137 -9.4344 4.3085
23 6 5.0312 -7.3862 -1.4738
24 6 4.6274 -8.8707 -1.4152
25 6 3.4642 -8.4379 -0.5071
26 6 2.1620 -3.4994 -0.0015
27 7 1.5125 -2.3561 -0.0010
28 6 2.1487 -1.1940 -0.0009
29 1 -0.3633 -0.0003 1.0276
30 1 -0.3633 0.8902 -0.5135
31 1 -0.3634 -0.8898 -0.5142
32 1 5.8959 1.1609 -0.0009
33 1 5.3620 -2.3419 0.0098
34 1 3.0111 -7.5376 3.3981
35 1 4.5545 -6.8357 -2.2848
36 1 6.1080 -7.2236 -1.4262
37 1 5.3610 -9.5020 -0.9140
38 1 4.3049 -9.2760 -2.3742
39 1 3.2776 -9.1231 0.3199
40 1 2.5574 -8.1754 -1.0520
41 1 1.6041 -4.4243 -0.0015
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000810857193.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:51
Heat of formation + Delta-G solvation = -77.005001 kcal
Electronic energy + Delta-G solvation = -30143.647664 eV
Core-core repulsion = 25797.106986 eV
Total energy + Delta-G solvation = -4346.540678 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-43.23446 -41.33008 -40.47538 -40.01202 -38.79187 -37.16188 -36.11858 -35.96938
-34.33082 -33.83579 -32.12411 -28.67869 -28.17214 -26.59690 -26.41439 -26.23879
-24.66523 -23.83764 -22.73345 -21.15118 -20.82537 -20.40914 -19.46839 -18.38209
-18.10701 -17.99526 -17.29695 -17.13110 -16.83721 -16.81546 -16.66041 -16.22634
-15.79892 -15.69723 -15.62114 -15.20589 -14.93021 -14.65503 -14.39413 -14.18859
-14.06322 -13.45155 -13.43589 -12.93469 -12.91424 -12.81697 -12.34375 -12.25720
-12.08083 -11.94389 -11.90516 -11.79992 -11.67698 -11.59283 -11.27024 -10.98961
-10.95333 -10.75491 -10.50705 -10.40061 -9.81421 -8.16503 -6.32206 -1.10104
-0.77714 0.27135 1.00096 1.36089 1.41689 1.42654 1.51252 1.59781
2.06782 2.19308 2.39263 2.54937 2.62254 2.78777 3.12066 3.31677
3.45910 3.51210 3.73342 4.04064 4.07521 4.09407 4.14864 4.26858
4.40277 4.41165 4.53569 4.69073 4.74846 4.77480 4.92870 4.99618
5.01065 5.06930 5.22697 5.42882 5.49926 5.68472 5.81264 5.94327
6.00336 6.23345 6.40412 6.42963 6.72547 6.74417 7.25625 7.42213
8.86998
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.015382 B = 0.003069 C = 0.002994
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.813447 B = 9122.108272 C = 9351.042188
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.533 5.533
3 C 0.673 3.327
4 O -0.553 6.553
5 N -0.624 5.624
6 C 0.512 3.488
7 O -0.416 6.416
8 C -0.241 4.241
9 C 0.095 3.905
10 C -0.214 4.214
11 C 0.508 3.492
12 O -0.530 6.530
13 O -0.345 6.345
14 C 0.218 3.782
15 C -0.526 4.526
16 H 0.049 0.951
17 C 0.040 3.960
18 N -0.881 5.881
19 Si 0.940 3.060
20 H -0.272 1.272
21 H -0.284 1.284
22 H -0.273 1.273
23 C -0.153 4.153
24 C -0.115 4.115
25 C -0.105 4.105
26 C 0.257 3.743
27 N -0.514 5.514
28 C 0.425 3.575
29 H 0.082 0.918
30 H 0.093 0.907
31 H 0.107 0.893
32 H 0.446 0.554
33 H 0.179 0.821
34 H 0.264 0.736
35 H 0.078 0.922
36 H 0.049 0.951
37 H 0.073 0.927
38 H 0.090 0.910
39 H 0.050 0.950
40 H 0.078 0.922
41 H 0.200 0.800
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.224 9.341 -6.751 11.738
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.257 5.257
3 C 0.374 3.626
4 O -0.428 6.428
5 N -0.381 5.381
6 C 0.304 3.696
7 O -0.212 6.212
8 C -0.250 4.250
9 C 0.069 3.931
10 C -0.219 4.219
11 C 0.352 3.648
12 O -0.421 6.421
13 O -0.261 6.261
14 C 0.185 3.815
15 C -0.564 4.564
16 H 0.067 0.933
17 C -0.164 4.164
18 N -0.518 5.518
19 Si 0.766 3.234
20 H -0.197 1.197
21 H -0.210 1.210
22 H -0.198 1.198
23 C -0.191 4.191
24 C -0.152 4.152
25 C -0.143 4.143
26 C 0.094 3.906
27 N -0.229 5.229
28 C 0.188 3.812
29 H 0.101 0.899
30 H 0.111 0.889
31 H 0.126 0.874
32 H 0.310 0.690
33 H 0.196 0.804
34 H 0.073 0.927
35 H 0.096 0.904
36 H 0.068 0.932
37 H 0.091 0.909
38 H 0.108 0.892
39 H 0.069 0.931
40 H 0.096 0.904
41 H 0.217 0.783
Dipole moment (debyes) X Y Z Total
from point charges -3.144 10.240 -6.626 12.595
hybrid contribution 1.416 -0.380 1.201 1.895
sum -1.727 9.860 -5.425 11.385
Atomic orbital electron populations
1.22175 0.74030 1.05676 1.04835 1.46085 1.11422 1.03644 1.64509
1.17178 0.84828 0.82613 0.77942 1.90935 1.66164 1.32021 1.53725
1.69503 1.04782 1.28930 1.34883 1.21386 0.85259 0.87052 0.75900
1.84940 1.12656 1.39654 1.83992 1.19193 0.92020 0.93225 1.20550
1.21816 1.02255 0.87826 0.81218 1.20353 0.95579 0.92187 1.13780
1.20647 0.85782 0.85159 0.73166 1.90744 1.15760 1.88673 1.46935
1.86495 1.43106 1.15237 1.81292 1.21461 0.89739 0.78251 0.92077
1.21093 0.92488 1.49823 0.92947 0.93291 1.25581 0.95974 0.94052
1.00759 1.70069 1.11768 1.47447 1.22494 0.85789 0.79674 0.78192
0.79753 1.19704 1.21012 1.19838 1.23514 1.00017 0.97784 0.97764
1.22493 0.97986 0.95128 0.99634 1.22886 0.97008 0.96291 0.98097
1.23574 0.90377 0.95667 0.80975 1.67477 1.38588 0.96121 1.20733
1.18608 0.86800 0.87553 0.88192 0.89937 0.88872 0.87406 0.69042
0.80404 0.92672 0.90397 0.93204 0.90864 0.89163 0.93074 0.90396
0.78310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.46 10.13 127.77 1.29 2.75 16
2 N -0.53 -13.45 3.03 -678.91 -2.06 -15.50 16
3 C 0.67 19.65 8.30 179.60 1.49 21.14 16
4 O -0.55 -19.13 16.59 -4.84 -0.08 -19.21 16
5 N -0.62 -15.94 10.35 -434.15 -4.49 -20.43 16
6 C 0.51 10.59 8.12 86.86 0.71 11.29 16
7 O -0.42 -5.53 13.07 -81.83 -1.07 -6.60 16
8 C -0.24 -5.73 5.88 -20.09 -0.12 -5.85 16
9 C 0.10 2.45 9.33 22.93 0.21 2.66 16
10 C -0.21 -6.54 5.89 -19.98 -0.12 -6.66 16
11 C 0.51 20.56 7.46 70.28 0.52 21.09 16
12 O -0.53 -24.14 14.91 19.86 0.30 -23.84 16
13 O -0.35 -15.15 9.03 -56.48 -0.51 -15.66 16
14 C 0.22 9.93 0.48 -11.02 -0.01 9.92 16
15 C -0.53 -27.27 7.01 25.60 0.18 -27.09 16
16 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16
17 C 0.04 2.08 5.28 84.66 0.45 2.52 16
18 N -0.88 -46.25 12.74 21.45 0.27 -45.98 16
19 Si 0.94 41.66 29.54 68.60 2.03 43.68 16
20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16
21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
23 C -0.15 -5.96 6.65 31.18 0.21 -5.75 16
24 C -0.12 -4.00 7.81 31.18 0.24 -3.76 16
25 C -0.10 -4.25 7.26 31.12 0.23 -4.02 16
26 C 0.26 6.86 10.76 85.19 0.92 7.78 16
27 N -0.51 -12.93 9.21 -191.42 -1.76 -14.69 16
28 C 0.42 10.70 7.37 134.00 0.99 11.69 16
29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
30 H 0.09 1.81 7.33 -2.39 -0.02 1.79 16
31 H 0.11 1.84 7.41 -2.39 -0.02 1.83 16
32 H 0.45 1.78 8.99 -74.06 -0.67 1.12 16
33 H 0.18 4.26 7.51 -2.91 -0.02 4.24 16
34 H 0.26 13.26 8.32 -92.71 -0.77 12.49 16
35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16
36 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16
37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16
38 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16
39 H 0.05 2.30 7.92 -2.39 -0.02 2.28 16
40 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16
41 H 0.20 5.03 7.59 -2.91 -0.02 5.01 16
Total: -1.00 -69.46 359.19 0.27 -69.20
By element:
Atomic # 1 Polarization: 10.87 SS G_CDS: 0.45 Total: 11.32 kcal
Atomic # 6 Polarization: 30.51 SS G_CDS: 7.20 Total: 37.71 kcal
Atomic # 7 Polarization: -88.56 SS G_CDS: -8.04 Total: -96.60 kcal
Atomic # 8 Polarization: -63.94 SS G_CDS: -1.36 Total: -65.31 kcal
Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal
Total: -69.46 0.27 -69.20 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810857193.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.808 kcal
(2) G-P(sol) polarization free energy of solvation -69.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.005 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds