Wall clock time and date at job start Wed Apr 1 2020 03:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34406 * 119.79477 * 2 1 4 4 O 1.21854 * 118.47999 * 0.04160 * 3 2 1 5 5 N 1.33378 * 123.04702 * 180.02562 * 3 2 1 6 6 C 1.32223 * 121.59715 * 359.97438 * 5 3 2 7 7 O 1.34914 * 120.81096 * 180.02562 * 6 5 3 8 8 C 1.46757 * 118.37661 * 0.02562 * 6 5 3 9 9 C 1.39347 * 121.96725 * 180.26121 * 8 6 5 10 10 C 1.39867 * 117.75186 * 180.26717 * 9 8 6 11 11 C 1.47555 * 120.40627 * 179.73836 * 10 9 8 12 12 O 1.21493 * 119.99832 * 359.72668 * 11 10 9 13 13 O 1.34738 * 120.00038 * 179.72753 * 11 10 9 14 14 C 1.45200 * 116.99993 * 174.88570 * 13 11 10 15 15 C 1.50700 * 112.84648 * 65.09435 * 14 13 11 16 16 H 1.08007 * 119.99987 * 242.98945 * 15 14 13 17 17 C 1.37876 * 119.99915 * 62.99625 * 15 14 13 18 18 N 1.31509 * 120.00332 * 353.69517 * 17 15 14 19 19 Si 1.86798 * 119.99745 * 173.69792 * 17 15 14 20 20 H 1.48506 * 109.47485 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47237 * 119.99839 * 19 17 15 22 22 H 1.48499 * 109.47129 * 239.99781 * 19 17 15 23 23 C 1.53784 * 113.61126 * 293.90115 * 14 13 11 24 24 C 1.53957 * 87.01662 * 220.04543 * 23 14 13 25 25 C 1.53773 * 113.61371 * 196.29367 * 14 13 11 26 26 C 1.40059 * 119.18564 * 359.47370 * 10 9 8 27 27 N 1.31491 * 121.40107 * 0.26518 * 26 10 9 28 28 C 1.32484 * 121.70406 * 0.02562 * 27 26 10 29 29 H 1.08997 * 109.47082 * 269.98245 * 1 2 3 30 30 H 1.09001 * 109.46955 * 29.98061 * 1 2 3 31 31 H 1.09001 * 109.47474 * 149.97895 * 1 2 3 32 32 H 0.96703 * 113.99806 * 359.97438 * 7 6 5 33 33 H 1.07997 * 121.12423 * 0.03664 * 9 8 6 34 34 H 0.96998 * 120.00410 * 185.01598 * 18 17 15 35 35 H 1.08997 * 113.61607 * 334.56704 * 23 14 13 36 36 H 1.08996 * 113.61482 * 105.47161 * 23 14 13 37 37 H 1.08995 * 113.54149 * 270.81236 * 24 23 14 38 38 H 1.09000 * 113.74249 * 139.93746 * 24 23 14 39 39 H 1.09000 * 113.61494 * 254.52820 * 25 14 13 40 40 H 1.08997 * 113.61634 * 25.34833 * 25 14 13 41 41 H 1.08006 * 119.29511 * 180.29583 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1328 1.1664 0.0000 4 8 1.4921 2.2029 0.0008 5 7 3.4645 1.2421 -0.0005 6 6 4.2200 0.1570 -0.0005 7 8 5.5658 0.2520 -0.0005 8 6 3.5589 -1.1533 -0.0006 9 6 4.2820 -2.3445 0.0048 10 6 3.5619 -3.5435 -0.0015 11 6 4.2683 -4.8389 -0.0021 12 8 5.4829 -4.8685 -0.0022 13 8 3.5665 -5.9891 -0.0027 14 6 4.3230 -7.2230 -0.1186 15 6 5.2210 -7.4722 1.0657 16 1 6.2921 -7.5103 0.9327 17 6 4.6751 -7.6517 2.3190 18 7 3.3841 -7.4830 2.5043 19 14 5.7694 -8.1344 3.7539 20 1 7.1729 -8.2613 3.2855 21 1 5.6914 -7.0917 4.8085 22 1 5.3137 -9.4344 4.3085 23 6 5.0312 -7.3862 -1.4738 24 6 4.6274 -8.8707 -1.4152 25 6 3.4642 -8.4379 -0.5071 26 6 2.1620 -3.4994 -0.0015 27 7 1.5125 -2.3561 -0.0010 28 6 2.1487 -1.1940 -0.0009 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 5.8959 1.1609 -0.0009 33 1 5.3620 -2.3419 0.0098 34 1 3.0111 -7.5376 3.3981 35 1 4.5545 -6.8357 -2.2848 36 1 6.1080 -7.2236 -1.4262 37 1 5.3610 -9.5020 -0.9140 38 1 4.3049 -9.2760 -2.3742 39 1 3.2776 -9.1231 0.3199 40 1 2.5574 -8.1754 -1.0520 41 1 1.6041 -4.4243 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:51 Heat of formation + Delta-G solvation = -77.005001 kcal Electronic energy + Delta-G solvation = -30143.647664 eV Core-core repulsion = 25797.106986 eV Total energy + Delta-G solvation = -4346.540678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.23446 -41.33008 -40.47538 -40.01202 -38.79187 -37.16188 -36.11858 -35.96938 -34.33082 -33.83579 -32.12411 -28.67869 -28.17214 -26.59690 -26.41439 -26.23879 -24.66523 -23.83764 -22.73345 -21.15118 -20.82537 -20.40914 -19.46839 -18.38209 -18.10701 -17.99526 -17.29695 -17.13110 -16.83721 -16.81546 -16.66041 -16.22634 -15.79892 -15.69723 -15.62114 -15.20589 -14.93021 -14.65503 -14.39413 -14.18859 -14.06322 -13.45155 -13.43589 -12.93469 -12.91424 -12.81697 -12.34375 -12.25720 -12.08083 -11.94389 -11.90516 -11.79992 -11.67698 -11.59283 -11.27024 -10.98961 -10.95333 -10.75491 -10.50705 -10.40061 -9.81421 -8.16503 -6.32206 -1.10104 -0.77714 0.27135 1.00096 1.36089 1.41689 1.42654 1.51252 1.59781 2.06782 2.19308 2.39263 2.54937 2.62254 2.78777 3.12066 3.31677 3.45910 3.51210 3.73342 4.04064 4.07521 4.09407 4.14864 4.26858 4.40277 4.41165 4.53569 4.69073 4.74846 4.77480 4.92870 4.99618 5.01065 5.06930 5.22697 5.42882 5.49926 5.68472 5.81264 5.94327 6.00336 6.23345 6.40412 6.42963 6.72547 6.74417 7.25625 7.42213 8.86998 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003069 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.813447 B = 9122.108272 C = 9351.042188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.533 5.533 3 C 0.673 3.327 4 O -0.553 6.553 5 N -0.624 5.624 6 C 0.512 3.488 7 O -0.416 6.416 8 C -0.241 4.241 9 C 0.095 3.905 10 C -0.214 4.214 11 C 0.508 3.492 12 O -0.530 6.530 13 O -0.345 6.345 14 C 0.218 3.782 15 C -0.526 4.526 16 H 0.049 0.951 17 C 0.040 3.960 18 N -0.881 5.881 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.153 4.153 24 C -0.115 4.115 25 C -0.105 4.105 26 C 0.257 3.743 27 N -0.514 5.514 28 C 0.425 3.575 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.446 0.554 33 H 0.179 0.821 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 9.341 -6.751 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.257 5.257 3 C 0.374 3.626 4 O -0.428 6.428 5 N -0.381 5.381 6 C 0.304 3.696 7 O -0.212 6.212 8 C -0.250 4.250 9 C 0.069 3.931 10 C -0.219 4.219 11 C 0.352 3.648 12 O -0.421 6.421 13 O -0.261 6.261 14 C 0.185 3.815 15 C -0.564 4.564 16 H 0.067 0.933 17 C -0.164 4.164 18 N -0.518 5.518 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.191 4.191 24 C -0.152 4.152 25 C -0.143 4.143 26 C 0.094 3.906 27 N -0.229 5.229 28 C 0.188 3.812 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.310 0.690 33 H 0.196 0.804 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.144 10.240 -6.626 12.595 hybrid contribution 1.416 -0.380 1.201 1.895 sum -1.727 9.860 -5.425 11.385 Atomic orbital electron populations 1.22175 0.74030 1.05676 1.04835 1.46085 1.11422 1.03644 1.64509 1.17178 0.84828 0.82613 0.77942 1.90935 1.66164 1.32021 1.53725 1.69503 1.04782 1.28930 1.34883 1.21386 0.85259 0.87052 0.75900 1.84940 1.12656 1.39654 1.83992 1.19193 0.92020 0.93225 1.20550 1.21816 1.02255 0.87826 0.81218 1.20353 0.95579 0.92187 1.13780 1.20647 0.85782 0.85159 0.73166 1.90744 1.15760 1.88673 1.46935 1.86495 1.43106 1.15237 1.81292 1.21461 0.89739 0.78251 0.92077 1.21093 0.92488 1.49823 0.92947 0.93291 1.25581 0.95974 0.94052 1.00759 1.70069 1.11768 1.47447 1.22494 0.85789 0.79674 0.78192 0.79753 1.19704 1.21012 1.19838 1.23514 1.00017 0.97784 0.97764 1.22493 0.97986 0.95128 0.99634 1.22886 0.97008 0.96291 0.98097 1.23574 0.90377 0.95667 0.80975 1.67477 1.38588 0.96121 1.20733 1.18608 0.86800 0.87553 0.88192 0.89937 0.88872 0.87406 0.69042 0.80404 0.92672 0.90397 0.93204 0.90864 0.89163 0.93074 0.90396 0.78310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 10.13 127.77 1.29 2.75 16 2 N -0.53 -13.45 3.03 -678.91 -2.06 -15.50 16 3 C 0.67 19.65 8.30 179.60 1.49 21.14 16 4 O -0.55 -19.13 16.59 -4.84 -0.08 -19.21 16 5 N -0.62 -15.94 10.35 -434.15 -4.49 -20.43 16 6 C 0.51 10.59 8.12 86.86 0.71 11.29 16 7 O -0.42 -5.53 13.07 -81.83 -1.07 -6.60 16 8 C -0.24 -5.73 5.88 -20.09 -0.12 -5.85 16 9 C 0.10 2.45 9.33 22.93 0.21 2.66 16 10 C -0.21 -6.54 5.89 -19.98 -0.12 -6.66 16 11 C 0.51 20.56 7.46 70.28 0.52 21.09 16 12 O -0.53 -24.14 14.91 19.86 0.30 -23.84 16 13 O -0.35 -15.15 9.03 -56.48 -0.51 -15.66 16 14 C 0.22 9.93 0.48 -11.02 -0.01 9.92 16 15 C -0.53 -27.27 7.01 25.60 0.18 -27.09 16 16 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 17 C 0.04 2.08 5.28 84.66 0.45 2.52 16 18 N -0.88 -46.25 12.74 21.45 0.27 -45.98 16 19 Si 0.94 41.66 29.54 68.60 2.03 43.68 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.15 -5.96 6.65 31.18 0.21 -5.75 16 24 C -0.12 -4.00 7.81 31.18 0.24 -3.76 16 25 C -0.10 -4.25 7.26 31.12 0.23 -4.02 16 26 C 0.26 6.86 10.76 85.19 0.92 7.78 16 27 N -0.51 -12.93 9.21 -191.42 -1.76 -14.69 16 28 C 0.42 10.70 7.37 134.00 0.99 11.69 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.81 7.33 -2.39 -0.02 1.79 16 31 H 0.11 1.84 7.41 -2.39 -0.02 1.83 16 32 H 0.45 1.78 8.99 -74.06 -0.67 1.12 16 33 H 0.18 4.26 7.51 -2.91 -0.02 4.24 16 34 H 0.26 13.26 8.32 -92.71 -0.77 12.49 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.05 2.30 7.92 -2.39 -0.02 2.28 16 40 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.20 5.03 7.59 -2.91 -0.02 5.01 16 Total: -1.00 -69.46 359.19 0.27 -69.20 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.45 Total: 11.32 kcal Atomic # 6 Polarization: 30.51 SS G_CDS: 7.20 Total: 37.71 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -8.04 Total: -96.60 kcal Atomic # 8 Polarization: -63.94 SS G_CDS: -1.36 Total: -65.31 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.46 0.27 -69.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.808 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds