Wall clock time and date at job start Wed Apr 1 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47490 * 2 1 4 4 O 1.45203 * 109.47568 * 120.00551 * 2 1 3 5 5 C 1.34696 * 116.99865 * 270.00335 * 4 2 1 6 6 O 1.21471 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.47769 * 120.00319 * 179.97438 * 5 4 2 8 8 C 1.39980 * 120.02557 * 359.71924 * 7 5 4 9 9 C 1.38316 * 120.35110 * 179.76373 * 8 7 5 10 10 C 1.37757 * 120.41574 * 0.51749 * 9 8 7 11 11 C 1.40752 * 120.05247 * 359.74287 * 10 9 8 12 12 C 1.41446 * 120.17428 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99976 * 334.91729 * 12 11 10 14 14 C 1.39939 * 120.00018 * 154.91790 * 12 11 10 15 15 N 1.30827 * 119.99577 * 342.59634 * 14 12 11 16 16 Si 1.86801 * 120.00077 * 162.59696 * 14 12 11 17 17 H 1.48506 * 109.46698 * 59.99974 * 16 14 12 18 18 H 1.48505 * 109.47058 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47200 * 300.00149 * 16 14 12 20 20 C 1.39042 * 120.03600 * 180.02562 * 7 5 4 21 21 C 1.50709 * 109.47048 * 240.00346 * 2 1 3 22 22 C 1.35353 * 126.74513 * 124.70943 * 21 2 1 23 23 N 1.35315 * 106.16780 * 179.85146 * 22 21 2 24 24 C 1.46504 * 125.86813 * 180.18343 * 23 22 21 25 25 C 1.50696 * 109.46911 * 125.29914 * 24 23 22 26 26 O 1.20829 * 120.00325 * 0.02562 * 25 24 23 27 27 O 1.34232 * 120.00013 * 180.02562 * 25 24 23 28 28 N 1.28714 * 108.26754 * 0.42043 * 23 22 21 29 29 N 1.28639 * 110.17548 * 359.73758 * 28 23 22 30 30 H 1.08996 * 109.47407 * 299.99202 * 1 2 3 31 31 H 1.09000 * 109.47265 * 59.99599 * 1 2 3 32 32 H 1.09008 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.82093 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.78875 * 180.25591 * 9 8 7 35 35 H 1.08004 * 119.97285 * 179.75897 * 10 9 8 36 36 H 0.97007 * 119.99725 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.20421 * 359.94661 * 20 7 5 38 38 H 1.07990 * 126.91943 * 0.02562 * 22 21 2 39 39 H 1.08993 * 109.47403 * 245.30237 * 24 23 22 40 40 H 1.08996 * 109.47046 * 5.30236 * 24 23 22 41 41 H 0.96701 * 116.99822 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2179 0.0664 2.2849 6 8 1.9977 1.2606 2.2541 7 6 2.7093 -0.5623 3.5286 8 6 2.9576 -1.9394 3.5665 9 6 3.4224 -2.5341 4.7256 10 6 3.6361 -1.7806 5.8588 11 6 3.3869 -0.3954 5.8415 12 6 3.6060 0.3809 7.0035 13 1 3.5655 -0.0826 7.9781 14 6 3.8751 1.7495 6.8901 15 7 4.2594 2.2477 5.7431 16 14 3.6857 2.8649 8.3766 17 1 4.5965 2.4084 9.4571 18 1 4.0291 4.2588 7.9964 19 1 2.2819 2.8140 8.8580 20 6 2.9194 0.2122 4.6640 21 6 2.0323 -0.7104 -1.2306 22 6 2.8845 -0.2170 -2.1592 23 7 3.0540 -1.1990 -3.0746 24 6 3.8996 -1.1230 -4.2685 25 6 4.8704 -2.2756 -4.2707 26 8 4.8570 -3.0785 -3.3679 27 8 5.7501 -2.4103 -5.2756 28 7 2.3408 -2.2097 -2.7188 29 7 1.7191 -1.9502 -1.6229 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.7895 -2.5399 2.6847 34 1 3.6149 -3.5966 4.7435 35 1 3.9954 -2.2530 6.7611 36 1 4.4463 3.1963 5.6646 37 1 2.7253 1.2744 4.6408 38 1 3.3399 0.7622 -2.1666 39 1 3.2747 -1.1726 -5.1602 40 1 4.4516 -0.1831 -4.2635 41 1 6.3524 -3.1656 -5.2335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827861917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:06 Heat of formation + Delta-G solvation = -48.805426 kcal Electronic energy + Delta-G solvation = -28754.073597 eV Core-core repulsion = 24408.755744 eV Total energy + Delta-G solvation = -4345.317853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57434 -40.74131 -39.83521 -37.44987 -36.82966 -36.07036 -34.98908 -33.74424 -32.76937 -30.44053 -30.00321 -29.47825 -29.19534 -25.41461 -24.63946 -23.74096 -22.99274 -21.94394 -21.00339 -20.66257 -19.63514 -18.85211 -17.93517 -17.84477 -17.33372 -16.70993 -16.43887 -16.01779 -15.87498 -15.36697 -15.12939 -14.92819 -14.72192 -14.21921 -13.77397 -13.61301 -13.50578 -13.10148 -12.90707 -12.71763 -12.47428 -12.18251 -12.08955 -11.86212 -11.65992 -11.39541 -11.19641 -11.19043 -11.11632 -10.93252 -10.74861 -10.51269 -10.43317 -10.26772 -10.15531 -9.70300 -9.59255 -9.36075 -9.22255 -7.71937 -7.52630 -6.81090 -4.41941 1.11436 1.50424 1.65732 1.99371 2.20128 2.44750 2.80810 3.06874 3.08704 3.16264 3.38385 3.60717 3.82050 3.91319 4.11818 4.21208 4.45076 4.53884 4.59863 4.80515 5.06886 5.18511 5.46184 5.48500 5.56552 5.70111 5.84866 5.92638 5.96249 6.13468 6.17600 6.29510 6.46893 6.66710 6.95587 6.97315 7.00921 7.18960 7.20266 7.33784 7.71403 7.78523 7.92824 8.12418 8.29498 8.45850 8.56710 8.78752 8.81042 10.14518 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002285 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.545108 B =12251.309597 C =12530.918100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.173 3.827 3 H 0.100 0.900 4 O -0.341 6.341 5 C 0.514 3.486 6 O -0.519 6.519 7 C -0.115 4.115 8 C -0.189 4.189 9 C -0.105 4.105 10 C -0.200 4.200 11 C 0.095 3.905 12 C -0.461 4.461 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.789 5.789 16 Si 0.911 3.089 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.088 4.088 21 C -0.011 4.011 22 C -0.028 4.028 23 N -0.298 5.298 24 C 0.131 3.869 25 C 0.464 3.536 26 O -0.476 6.476 27 O -0.512 6.512 28 N -0.061 5.061 29 N -0.232 5.232 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.284 0.716 37 H 0.136 0.864 38 H 0.198 0.802 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -0.846 -21.542 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.116 3.884 3 H 0.118 0.882 4 O -0.258 6.258 5 C 0.361 3.639 6 O -0.408 6.408 7 C -0.117 4.117 8 C -0.209 4.209 9 C -0.123 4.123 10 C -0.219 4.219 11 C 0.092 3.908 12 C -0.490 4.490 13 H 0.100 0.900 14 C -0.145 4.145 15 N -0.414 5.414 16 Si 0.736 3.264 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.107 4.107 21 C -0.147 4.147 22 C -0.177 4.177 23 N -0.093 5.093 24 C 0.008 3.992 25 C 0.302 3.698 26 O -0.360 6.360 27 O -0.325 6.325 28 N -0.040 5.040 29 N -0.101 5.101 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.215 0.785 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -0.194 -1.593 -21.816 21.875 hybrid contribution 0.973 1.220 0.602 1.672 sum 0.778 -0.373 -21.214 21.232 Atomic orbital electron populations 1.22114 0.93013 1.03870 1.02874 1.20485 0.94632 0.94708 0.78615 0.88176 1.86770 1.77501 1.41848 1.19656 1.21913 0.73396 0.84981 0.83575 1.90742 1.49617 1.16241 1.84239 1.18825 1.08014 0.94449 0.90377 1.20630 1.08936 0.93132 0.98216 1.20523 1.00420 0.97828 0.93517 1.21198 1.08234 0.95000 0.97505 1.17536 0.89255 0.91308 0.92667 1.19520 1.42844 0.92701 0.93977 0.90021 1.25950 0.92207 0.98979 0.97367 1.69776 1.30488 1.15347 1.25787 0.86315 0.80054 0.78563 0.81517 1.18974 1.20271 1.18707 1.21641 0.97929 1.00181 0.90993 1.21600 1.01304 0.93366 0.98476 1.23374 1.04338 0.97676 0.92306 1.46771 1.32150 1.11151 1.19197 1.21206 0.91918 0.98737 0.87360 1.22894 0.80553 0.86406 0.79916 1.90924 1.67687 1.41787 1.35620 1.84417 1.46935 1.53464 1.47692 1.78451 1.05067 1.10216 1.10291 1.75129 1.17883 1.13205 1.03891 0.91066 0.91150 0.90711 0.87739 0.88525 0.88347 0.90451 0.84663 0.78469 0.83873 0.83211 0.71795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.53 37.15 0.35 -1.87 16 2 C 0.17 2.71 3.07 -27.88 -0.09 2.62 16 3 H 0.10 1.47 7.14 -51.93 -0.37 1.10 16 4 O -0.34 -6.80 9.10 -40.48 -0.37 -7.17 16 5 C 0.51 11.63 7.87 34.63 0.27 11.90 16 6 O -0.52 -12.27 15.59 -19.24 -0.30 -12.57 16 7 C -0.12 -2.84 5.87 -105.05 -0.62 -3.45 16 8 C -0.19 -4.38 9.62 -38.90 -0.37 -4.76 16 9 C -0.10 -2.35 10.01 -39.73 -0.40 -2.75 16 10 C -0.20 -4.81 9.78 -38.81 -0.38 -5.19 16 11 C 0.09 2.51 5.57 -106.87 -0.59 1.92 16 12 C -0.46 -12.05 9.05 -37.72 -0.34 -12.39 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 14 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 15 N -0.79 -20.61 10.97 55.55 0.61 -20.00 16 16 Si 0.91 18.61 29.59 -169.99 -5.03 13.57 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 20 C -0.09 -2.35 8.23 -38.43 -0.32 -2.66 16 21 C -0.01 -0.16 6.14 -82.77 -0.51 -0.67 16 22 C -0.03 -0.29 11.49 -17.04 -0.20 -0.49 16 23 N -0.30 -3.08 3.20 -62.45 -0.20 -3.28 16 24 C 0.13 0.62 7.05 -5.19 -0.04 0.58 16 25 C 0.46 3.43 8.34 36.00 0.30 3.73 16 26 O -0.48 -6.20 16.43 -18.75 -0.31 -6.51 16 27 O -0.51 -2.12 13.42 -39.26 -0.53 -2.64 16 28 N -0.06 -0.89 12.13 60.35 0.73 -0.16 16 29 N -0.23 -3.85 12.40 33.29 0.41 -3.44 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 33 H 0.10 2.28 7.59 -52.49 -0.40 1.88 16 34 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 36 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.14 3.81 5.77 -52.49 -0.30 3.51 16 38 H 0.20 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.15 0.09 8.07 -51.93 -0.42 -0.33 16 41 H 0.42 0.37 9.10 45.56 0.41 0.78 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -36.88 371.54 -5.97 -42.86 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.58 Total: 5.46 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.01 Total: -11.72 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 1.55 Total: -26.87 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.50 Total: -28.89 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.88 -5.97 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827861917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.950 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds