Wall clock time and date at job start Wed Apr 1 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47490 * 2 1 4 4 O 1.45203 * 109.47568 * 120.00551 * 2 1 3 5 5 C 1.34696 * 116.99865 * 270.00335 * 4 2 1 6 6 O 1.21471 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.47769 * 120.00319 * 179.97438 * 5 4 2 8 8 C 1.39980 * 120.02557 * 359.71924 * 7 5 4 9 9 C 1.38316 * 120.35110 * 179.76373 * 8 7 5 10 10 C 1.37757 * 120.41574 * 0.51749 * 9 8 7 11 11 C 1.40752 * 120.05247 * 359.74287 * 10 9 8 12 12 C 1.41446 * 120.17428 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99976 * 334.91729 * 12 11 10 14 14 C 1.39939 * 120.00018 * 154.91790 * 12 11 10 15 15 N 1.30827 * 119.99577 * 342.59634 * 14 12 11 16 16 Si 1.86801 * 120.00077 * 162.59696 * 14 12 11 17 17 H 1.48506 * 109.46698 * 59.99974 * 16 14 12 18 18 H 1.48505 * 109.47058 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47200 * 300.00149 * 16 14 12 20 20 C 1.39042 * 120.03600 * 180.02562 * 7 5 4 21 21 C 1.50709 * 109.47048 * 240.00346 * 2 1 3 22 22 C 1.35353 * 126.74513 * 124.70943 * 21 2 1 23 23 N 1.35315 * 106.16780 * 179.85146 * 22 21 2 24 24 C 1.46504 * 125.86813 * 180.18343 * 23 22 21 25 25 C 1.50696 * 109.46911 * 125.29914 * 24 23 22 26 26 O 1.20829 * 120.00325 * 0.02562 * 25 24 23 27 27 O 1.34232 * 120.00013 * 180.02562 * 25 24 23 28 28 N 1.28714 * 108.26754 * 0.42043 * 23 22 21 29 29 N 1.28639 * 110.17548 * 359.73758 * 28 23 22 30 30 H 1.08996 * 109.47407 * 299.99202 * 1 2 3 31 31 H 1.09000 * 109.47265 * 59.99599 * 1 2 3 32 32 H 1.09008 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.82093 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.78875 * 180.25591 * 9 8 7 35 35 H 1.08004 * 119.97285 * 179.75897 * 10 9 8 36 36 H 0.97007 * 119.99725 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.20421 * 359.94661 * 20 7 5 38 38 H 1.07990 * 126.91943 * 0.02562 * 22 21 2 39 39 H 1.08993 * 109.47403 * 245.30237 * 24 23 22 40 40 H 1.08996 * 109.47046 * 5.30236 * 24 23 22 41 41 H 0.96701 * 116.99822 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2179 0.0664 2.2849 6 8 1.9977 1.2606 2.2541 7 6 2.7093 -0.5623 3.5286 8 6 2.9576 -1.9394 3.5665 9 6 3.4224 -2.5341 4.7256 10 6 3.6361 -1.7806 5.8588 11 6 3.3869 -0.3954 5.8415 12 6 3.6060 0.3809 7.0035 13 1 3.5655 -0.0826 7.9781 14 6 3.8751 1.7495 6.8901 15 7 4.2594 2.2477 5.7431 16 14 3.6857 2.8649 8.3766 17 1 4.5965 2.4084 9.4571 18 1 4.0291 4.2588 7.9964 19 1 2.2819 2.8140 8.8580 20 6 2.9194 0.2122 4.6640 21 6 2.0323 -0.7104 -1.2306 22 6 2.8845 -0.2170 -2.1592 23 7 3.0540 -1.1990 -3.0746 24 6 3.8996 -1.1230 -4.2685 25 6 4.8704 -2.2756 -4.2707 26 8 4.8570 -3.0785 -3.3679 27 8 5.7501 -2.4103 -5.2756 28 7 2.3408 -2.2097 -2.7188 29 7 1.7191 -1.9502 -1.6229 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.7895 -2.5399 2.6847 34 1 3.6149 -3.5966 4.7435 35 1 3.9954 -2.2530 6.7611 36 1 4.4463 3.1963 5.6646 37 1 2.7253 1.2744 4.6408 38 1 3.3399 0.7622 -2.1666 39 1 3.2747 -1.1726 -5.1602 40 1 4.4516 -0.1831 -4.2635 41 1 6.3524 -3.1656 -5.2335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827861917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:05 Heat of formation + Delta-G solvation = -74.129962 kcal Electronic energy + Delta-G solvation = -28755.171751 eV Core-core repulsion = 24408.755744 eV Total energy + Delta-G solvation = -4346.416007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.47452 -41.52985 -41.29333 -39.26408 -37.70033 -37.31321 -35.89271 -35.60930 -33.94435 -32.13112 -31.38198 -31.03214 -29.98403 -27.31492 -25.98272 -24.76644 -24.19690 -22.88892 -22.76505 -21.88255 -21.14945 -19.66098 -19.38473 -18.80245 -18.08080 -18.04333 -17.59964 -17.19839 -16.99111 -16.78224 -16.56965 -16.47937 -15.84203 -15.65739 -15.25293 -14.82226 -14.42036 -14.33362 -14.28108 -14.08231 -13.99715 -13.51670 -13.20025 -13.03327 -12.93857 -12.81864 -12.69481 -12.57526 -12.31844 -12.23080 -12.14466 -12.05916 -12.02554 -11.63656 -11.55927 -11.30603 -11.21643 -11.07561 -10.42755 -9.62517 -9.45625 -8.67679 -6.39368 0.12690 0.32414 0.96136 0.98464 1.03449 1.10299 1.39439 1.48160 1.52864 1.80620 1.96162 1.98717 2.20793 2.72566 3.04870 3.53249 3.62219 3.68784 3.82816 3.91326 4.00800 4.06126 4.10122 4.22961 4.39130 4.54602 4.60669 4.62943 4.68663 4.85804 4.88491 5.05003 5.11518 5.14203 5.28376 5.34669 5.37993 5.44801 5.50238 5.80647 5.88986 6.00221 6.21464 6.52237 6.78441 6.81653 6.86740 6.88581 7.33961 8.30156 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002285 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.545108 B =12251.309597 C =12530.918100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.110 0.890 4 O -0.347 6.347 5 C 0.520 3.480 6 O -0.536 6.536 7 C -0.127 4.127 8 C -0.187 4.187 9 C -0.100 4.100 10 C -0.205 4.205 11 C 0.067 3.933 12 C -0.493 4.493 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.824 5.824 16 Si 0.985 3.015 17 H -0.254 1.254 18 H -0.270 1.270 19 H -0.260 1.260 20 C -0.118 4.118 21 C -0.047 4.047 22 C 0.002 3.998 23 N -0.288 5.288 24 C 0.121 3.879 25 C 0.471 3.529 26 O -0.544 6.544 27 O -0.497 6.497 28 N -0.091 5.091 29 N -0.276 5.276 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.289 0.711 37 H 0.111 0.889 38 H 0.247 0.753 39 H 0.181 0.819 40 H 0.202 0.798 41 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -0.022 -23.231 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.111 3.889 3 H 0.128 0.872 4 O -0.264 6.264 5 C 0.367 3.633 6 O -0.427 6.427 7 C -0.128 4.128 8 C -0.206 4.206 9 C -0.118 4.118 10 C -0.224 4.224 11 C 0.064 3.936 12 C -0.522 4.522 13 H 0.105 0.895 14 C -0.184 4.184 15 N -0.450 5.450 16 Si 0.805 3.195 17 H -0.178 1.178 18 H -0.195 1.195 19 H -0.185 1.185 20 C -0.137 4.137 21 C -0.184 4.184 22 C -0.149 4.149 23 N -0.082 5.082 24 C 0.001 3.999 25 C 0.312 3.688 26 O -0.433 6.433 27 O -0.311 6.311 28 N -0.071 5.071 29 N -0.144 5.144 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.263 0.737 39 H 0.198 0.802 40 H 0.219 0.781 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 0.636 -0.813 -23.583 23.606 hybrid contribution 0.801 0.875 0.853 1.461 sum 1.437 0.062 -22.730 22.776 Atomic orbital electron populations 1.22077 0.92011 1.03405 1.03708 1.20820 0.95594 0.95042 0.77394 0.87178 1.86726 1.77218 1.42183 1.20267 1.21559 0.73110 0.84647 0.83953 1.90713 1.50384 1.16895 1.84739 1.19083 1.07637 0.95198 0.90912 1.20881 1.08061 0.92632 0.99068 1.20910 0.98825 0.99605 0.92441 1.21476 1.07803 0.94308 0.98830 1.17915 0.89866 0.92738 0.93038 1.19828 1.44261 0.93935 0.94173 0.89450 1.26860 0.91127 1.00057 1.00373 1.69858 1.31224 1.15909 1.27970 0.85205 0.80071 0.76528 0.77669 1.17810 1.19456 1.18468 1.21469 1.00511 0.99391 0.92368 1.21588 1.03921 0.93656 0.99254 1.24021 1.01708 0.98841 0.90300 1.47147 1.31162 1.09893 1.20014 1.21966 0.91796 0.99753 0.86398 1.23406 0.80387 0.85987 0.79021 1.90919 1.69734 1.44417 1.38239 1.84399 1.46489 1.54069 1.46151 1.78344 1.06430 1.11940 1.10338 1.75050 1.19511 1.14651 1.05221 0.92345 0.88056 0.91800 0.86334 0.84734 0.86626 0.89992 0.87068 0.73654 0.80219 0.78067 0.70158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.53 71.98 0.69 -3.57 16 2 C 0.17 5.19 3.07 29.85 0.09 5.28 16 3 H 0.11 3.14 7.14 -2.39 -0.02 3.13 16 4 O -0.35 -14.04 9.10 -56.06 -0.51 -14.55 16 5 C 0.52 24.09 7.87 70.34 0.55 24.65 16 6 O -0.54 -26.06 15.59 19.93 0.31 -25.75 16 7 C -0.13 -6.41 5.87 -20.14 -0.12 -6.53 16 8 C -0.19 -8.62 9.62 22.71 0.22 -8.40 16 9 C -0.10 -4.38 10.01 22.17 0.22 -4.15 16 10 C -0.20 -9.84 9.78 22.77 0.22 -9.61 16 11 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 12 C -0.49 -26.37 9.05 23.47 0.21 -26.16 16 13 H 0.09 4.39 7.90 -2.91 -0.02 4.36 16 14 C 0.03 1.58 5.14 85.25 0.44 2.02 16 15 N -0.82 -44.39 10.97 21.82 0.24 -44.15 16 16 Si 0.99 38.39 29.59 68.60 2.03 40.42 16 17 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 18 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 C -0.12 -6.53 8.23 23.02 0.19 -6.34 16 21 C -0.05 -1.31 6.14 41.60 0.26 -1.05 16 22 C 0.00 0.03 11.49 83.49 0.96 0.99 16 23 N -0.29 -5.20 3.20 -351.48 -1.12 -6.32 16 24 C 0.12 0.65 7.05 85.63 0.60 1.26 16 25 C 0.47 5.92 8.34 71.23 0.59 6.51 16 26 O -0.54 -14.01 16.43 21.95 0.36 -13.65 16 27 O -0.50 -2.76 13.42 -51.44 -0.69 -3.45 16 28 N -0.09 -2.61 12.13 37.02 0.45 -2.16 16 29 N -0.28 -9.17 12.40 -48.60 -0.60 -9.77 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.12 5.09 7.59 -2.91 -0.02 5.07 16 34 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 36 H 0.29 14.23 8.30 -92.70 -0.77 13.46 16 37 H 0.11 6.63 5.77 -2.91 -0.02 6.62 16 38 H 0.25 1.67 8.06 -2.92 -0.02 1.64 16 39 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.20 -0.99 8.07 -2.39 -0.02 -1.01 16 41 H 0.44 -0.08 9.10 -74.06 -0.67 -0.76 16 Total: -1.00 -86.46 371.54 5.91 -80.55 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.43 Total: 20.42 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 5.01 Total: -21.60 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.04 Total: -62.40 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.53 Total: -57.39 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -86.46 5.91 -80.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827861917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.422 kcal (2) G-P(sol) polarization free energy of solvation -86.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds