Wall clock time and date at job start Wed Apr 1 2020 03:12:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42911 * 1
3 3 C 1.35904 * 116.99593 * 2 1
4 4 C 1.38852 * 119.98973 * 0.02562 * 3 2 1
5 5 C 1.38230 * 120.21976 * 179.97438 * 4 3 2
6 6 C 1.38030 * 120.19325 * 359.71633 * 5 4 3
7 7 C 1.39481 * 119.97358 * 0.56030 * 6 5 4
8 8 C 1.48022 * 120.10851 * 179.72210 * 7 6 5
9 9 C 1.36660 * 126.58718 * 359.72154 * 8 7 6
10 10 C 1.41223 * 105.44353 * 180.02562 * 9 8 7
11 11 C 1.47643 * 126.33853 * 180.02562 * 10 9 8
12 12 O 1.21607 * 119.99893 * 7.98432 * 11 10 9
13 13 N 1.34773 * 119.99883 * 187.99022 * 11 10 9
14 14 C 1.36914 * 119.99474 * 176.33197 * 13 11 10
15 15 H 1.07994 * 120.00448 * 338.29228 * 14 13 11
16 16 C 1.39029 * 119.99449 * 158.01875 * 14 13 11
17 17 N 1.31372 * 120.00105 * 356.98145 * 16 14 13
18 18 Si 1.86799 * 119.99649 * 176.98094 * 16 14 13
19 19 H 1.48497 * 109.47433 * 60.00115 * 18 16 14
20 20 H 1.48501 * 109.46878 * 180.02562 * 18 16 14
21 21 H 1.48501 * 109.47230 * 299.99914 * 18 16 14
22 22 C 1.46493 * 120.00330 * 356.33271 * 13 11 10
23 23 C 1.50704 * 109.46940 * 277.29277 * 22 13 11
24 24 O 1.20820 * 120.00268 * 359.97438 * 23 22 13
25 25 O 1.34228 * 119.99876 * 179.97438 * 23 22 13
26 26 N 1.31897 * 107.32466 * 0.26050 * 10 9 8
27 27 N 1.28456 * 110.41889 * 359.55402 * 26 10 9
28 28 H 0.96995 * 125.00740 * 180.15752 * 27 26 10
29 29 C 1.38468 * 119.98829 * 180.02562 * 3 2 1
30 30 H 1.09000 * 109.47221 * 60.00376 * 1 2 3
31 31 H 1.09007 * 109.46552 * 179.97438 * 1 2 3
32 32 H 1.08994 * 109.47208 * 299.99675 * 1 2 3
33 33 H 1.07999 * 119.89073 * 359.97438 * 4 3 2
34 34 H 1.08005 * 119.90223 * 180.02562 * 5 4 3
35 35 H 1.08007 * 120.01170 * 180.30467 * 6 5 4
36 36 H 1.07998 * 127.27803 * 0.05665 * 9 8 7
37 37 H 0.97002 * 119.99914 * 180.02562 * 17 16 14
38 38 H 1.08998 * 109.47305 * 37.29192 * 22 13 11
39 39 H 1.09000 * 109.47589 * 157.29332 * 22 13 11
40 40 H 0.96695 * 117.00121 * 180.02562 * 25 23 22
41 41 H 1.08003 * 120.09503 * 359.97438 * 29 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 1.2895 2.3753 0.0005
5 6 1.9120 3.6095 0.0011
6 6 3.2898 3.6920 0.0070
7 6 4.0577 2.5276 0.0006
8 6 5.5355 2.6126 0.0007
9 6 6.2856 3.7550 0.0013
10 6 7.6299 3.3221 0.0005
11 6 8.8272 4.1860 0.0013
12 8 8.7100 5.3874 0.1489
13 7 10.0499 3.6431 -0.1618
14 6 11.1529 4.4508 -0.2364
15 1 11.0446 5.4885 -0.5151
16 6 12.4119 3.9362 0.0522
17 7 12.5366 2.6916 0.4537
18 14 13.9260 5.0148 -0.1310
19 1 13.8060 6.1929 0.7649
20 1 15.1360 4.2354 0.2347
21 1 14.0399 5.4731 -1.5389
22 6 10.1987 2.1890 -0.2593
23 6 10.2233 1.5927 1.1245
24 8 10.1268 2.3089 2.0928
25 8 10.3523 0.2659 1.2813
26 7 7.6178 2.0032 -0.0061
27 7 6.4099 1.5660 -0.0002
28 1 6.1570 0.6296 -0.0011
29 6 3.4288 1.2832 -0.0005
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0278 -0.0005
32 1 -0.3633 0.5137 0.8900
33 1 0.2111 2.3164 0.0005
34 1 1.3185 4.5119 0.0019
35 1 3.7731 4.6579 0.0124
36 1 5.9264 4.7734 0.0026
37 1 13.4149 2.3328 0.6554
38 1 9.3600 1.7746 -0.8187
39 1 11.1304 1.9527 -0.7733
40 1 10.3625 -0.0701 2.1880
41 1 4.0184 0.3783 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000832510547.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:20
Heat of formation + Delta-G solvation = -35.223389 kcal
Electronic energy + Delta-G solvation = -29680.366576 eV
Core-core repulsion = 25335.637684 eV
Total energy + Delta-G solvation = -4344.728891 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.23640 -40.28865 -39.14871 -37.88946 -37.62385 -35.12405 -34.40002 -32.65277
-31.82665 -31.43698 -30.63842 -28.73784 -27.64939 -27.46037 -25.34336 -23.42394
-22.88931 -22.29428 -20.87248 -20.66682 -19.10893 -18.45681 -17.18990 -17.07077
-16.73812 -16.49934 -16.08493 -16.07967 -15.96010 -15.61927 -15.06051 -14.69753
-14.33812 -14.08576 -14.06630 -13.95166 -13.52397 -13.23793 -13.13362 -12.94041
-12.63905 -12.38524 -11.86549 -11.78125 -11.71986 -11.52887 -11.29090 -11.23637
-10.94917 -10.52361 -10.39591 -10.31373 -10.04228 -9.85909 -9.52867 -8.99733
-8.88300 -8.72667 -8.64648 -8.10493 -7.86959 -6.39645 -3.94712 0.69304
1.18648 2.21234 2.59032 2.89760 3.06414 3.22431 3.25770 3.29644
3.64702 3.74137 3.97516 4.20427 4.36542 4.46566 4.50129 4.71760
4.72863 4.77101 4.88144 4.98451 5.03657 5.08062 5.15479 5.18965
5.25013 5.52159 5.75888 5.91291 5.96544 5.99618 6.20293 6.35381
6.37802 6.41121 6.66684 6.77667 6.88910 7.05688 7.24059 7.50004
7.66909 8.01204 8.22504 8.42407 9.06496 9.19019 9.33132 9.85374
10.63645
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.022978 B = 0.002604 C = 0.002393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.281490 B =10751.164277 C =11698.293410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.318 6.318
3 C 0.132 3.868
4 C -0.211 4.211
5 C -0.072 4.072
6 C -0.134 4.134
7 C 0.035 3.965
8 C 0.034 3.966
9 C -0.153 4.153
10 C 0.024 3.976
11 C 0.529 3.471
12 O -0.571 6.571
13 N -0.412 5.412
14 C -0.293 4.293
15 H 0.108 0.892
16 C 0.030 3.970
17 N -0.888 5.888
18 Si 0.941 3.059
19 H -0.271 1.271
20 H -0.284 1.284
21 H -0.272 1.272
22 C 0.139 3.861
23 C 0.510 3.490
24 O -0.522 6.522
25 O -0.532 6.532
26 N -0.259 5.259
27 N -0.389 5.389
28 H 0.439 0.561
29 C -0.154 4.154
30 H 0.056 0.944
31 H 0.099 0.901
32 H 0.056 0.944
33 H 0.128 0.872
34 H 0.130 0.870
35 H 0.135 0.865
36 H 0.162 0.838
37 H 0.273 0.727
38 H 0.095 0.905
39 H 0.138 0.862
40 H 0.387 0.613
41 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.761 -7.799 -2.837 22.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.087 3.913
4 C -0.230 4.230
5 C -0.090 4.090
6 C -0.154 4.154
7 C 0.033 3.967
8 C -0.090 4.090
9 C -0.182 4.182
10 C -0.135 4.135
11 C 0.317 3.683
12 O -0.453 6.453
13 N -0.130 5.130
14 C -0.421 4.421
15 H 0.126 0.874
16 C -0.172 4.172
17 N -0.529 5.529
18 Si 0.767 3.233
19 H -0.197 1.197
20 H -0.209 1.209
21 H -0.197 1.197
22 C 0.012 3.988
23 C 0.352 3.648
24 O -0.409 6.409
25 O -0.343 6.343
26 N -0.094 5.094
27 N -0.103 5.103
28 H 0.284 0.716
29 C -0.173 4.173
30 H 0.074 0.926
31 H 0.118 0.882
32 H 0.074 0.926
33 H 0.146 0.854
34 H 0.148 0.852
35 H 0.153 0.847
36 H 0.180 0.820
37 H 0.084 0.916
38 H 0.113 0.887
39 H 0.156 0.844
40 H 0.242 0.758
41 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -19.819 -8.022 -2.865 21.572
hybrid contribution -0.082 0.229 0.843 0.878
sum -19.900 -7.793 -2.021 21.467
Atomic orbital electron populations
1.23064 0.78270 1.03983 1.01418 1.86075 1.21477 1.26855 1.88780
1.18758 0.91836 0.84295 0.96378 1.21281 1.00044 0.92346 1.09347
1.20874 0.94233 0.97109 0.96796 1.21121 0.93453 0.98018 1.02766
1.17672 0.88452 0.92905 0.97706 1.19699 0.89917 0.88509 1.10862
1.21678 0.91142 0.98500 1.06845 1.22435 0.95859 0.89290 1.05958
1.16726 0.81452 0.86615 0.83554 1.90627 1.85308 1.14136 1.55193
1.43222 1.05300 1.04400 1.60050 1.19769 0.83349 0.95605 1.43376
0.87428 1.25395 0.99753 0.96653 0.95444 1.69680 1.25152 1.14092
1.43994 0.85761 0.79236 0.79396 0.78909 1.19669 1.20896 1.19681
1.21065 1.05219 0.81428 0.91043 1.23597 0.69392 0.78478 0.93371
1.90583 1.46859 1.61139 1.42273 1.84526 1.86674 1.27057 1.35993
1.73849 1.02146 1.13539 1.19886 1.43633 1.02881 1.09059 1.54726
0.71639 1.20246 0.91738 0.97382 1.07964 0.92569 0.88221 0.92570
0.85391 0.85162 0.84714 0.82004 0.91617 0.88749 0.84445 0.75784
0.85561
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.15 9.81 101.05 0.99 1.14 16
2 O -0.32 -3.05 10.49 -19.44 -0.20 -3.25 16
3 C 0.13 1.37 6.68 -39.27 -0.26 1.10 16
4 C -0.21 -1.86 9.03 -39.36 -0.36 -2.21 16
5 C -0.07 -0.64 10.03 -39.66 -0.40 -1.04 16
6 C -0.13 -1.46 9.57 -39.19 -0.38 -1.84 16
7 C 0.03 0.43 5.87 -104.98 -0.62 -0.19 16
8 C 0.03 0.52 6.98 -82.40 -0.58 -0.06 16
9 C -0.15 -2.77 10.17 -39.02 -0.40 -3.17 16
10 C 0.02 0.53 6.76 -82.87 -0.56 -0.03 16
11 C 0.53 13.99 7.35 -12.42 -0.09 13.90 16
12 O -0.57 -16.44 16.63 5.27 0.09 -16.35 16
13 N -0.41 -11.05 2.20 -117.24 -0.26 -11.31 16
14 C -0.29 -8.21 9.31 -14.99 -0.14 -8.35 16
15 H 0.11 3.06 7.40 -52.49 -0.39 2.67 16
16 C 0.03 0.79 5.26 -17.46 -0.09 0.70 16
17 N -0.89 -23.62 8.81 55.50 0.49 -23.13 16
18 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16
19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
22 C 0.14 3.32 4.79 -5.20 -0.02 3.29 16
23 C 0.51 12.30 5.48 36.01 0.20 12.49 16
24 O -0.52 -14.61 16.94 -18.75 -0.32 -14.93 16
25 O -0.53 -10.51 13.42 -39.25 -0.53 -11.04 16
26 N -0.26 -4.98 7.95 33.36 0.27 -4.71 16
27 N -0.39 -5.83 6.80 33.32 0.23 -5.60 16
28 H 0.44 4.88 8.08 -190.45 -1.54 3.34 16
29 C -0.15 -1.71 9.65 -39.06 -0.38 -2.09 16
30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16
31 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16
32 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16
33 H 0.13 0.80 6.28 -52.49 -0.33 0.47 16
34 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16
35 H 0.13 1.37 7.09 -52.48 -0.37 0.99 16
36 H 0.16 2.67 7.39 -52.49 -0.39 2.28 16
37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16
38 H 0.10 2.04 5.48 -51.93 -0.28 1.75 16
39 H 0.14 3.39 6.06 -51.93 -0.31 3.07 16
40 H 0.39 6.00 9.10 45.56 0.41 6.42 16
41 H 0.13 1.23 7.19 -52.48 -0.38 0.85 16
LS Contribution 354.74 15.07 5.35 5.35
Total: -1.00 -36.56 354.74 -7.34 -43.90
By element:
Atomic # 1 Polarization: 15.93 SS G_CDS: -4.35 Total: 11.57 kcal
Atomic # 6 Polarization: 16.72 SS G_CDS: -3.07 Total: 13.64 kcal
Atomic # 7 Polarization: -45.48 SS G_CDS: 0.72 Total: -44.75 kcal
Atomic # 8 Polarization: -44.61 SS G_CDS: -0.96 Total: -45.57 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -36.56 -7.34 -43.90 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000832510547.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.676 kcal
(2) G-P(sol) polarization free energy of solvation -36.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds