Wall clock time and date at job start Wed Apr 1 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99605 * 2 1 4 4 C 1.50699 * 109.47497 * 84.99958 * 3 2 1 5 5 H 1.07999 * 119.99553 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00230 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99868 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99996 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47434 * 59.99772 * 8 6 4 10 10 H 1.48497 * 109.47037 * 299.99663 * 8 6 4 11 11 H 1.48499 * 109.46842 * 179.97438 * 8 6 4 12 12 S 1.65596 * 120.00336 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39929 * 23.54389 * 12 2 1 14 14 O 1.42097 * 106.40402 * 156.46388 * 12 2 1 15 15 N 1.65599 * 107.21983 * 270.00277 * 12 2 1 16 16 C 1.47024 * 125.65127 * 269.71499 * 15 12 2 17 17 C 1.54329 * 107.26605 * 178.85123 * 16 15 12 18 18 H 1.09008 * 110.84653 * 219.67653 * 17 16 15 19 19 C 1.53000 * 110.66880 * 96.52322 * 17 16 15 20 20 N 1.46898 * 109.47223 * 67.73302 * 19 17 16 21 21 C 1.55152 * 103.02240 * 338.13760 * 17 16 15 22 22 H 1.08996 * 111.00809 * 277.23678 * 21 17 16 23 23 C 1.52997 * 111.00510 * 153.38223 * 21 17 16 24 24 F 1.39903 * 109.47518 * 300.92879 * 23 21 17 25 25 F 1.39900 * 109.47132 * 60.93124 * 23 21 17 26 26 F 1.39899 * 109.47148 * 180.92705 * 23 21 17 27 27 C 1.47425 * 125.64761 * 90.02572 * 15 12 2 28 28 H 1.09001 * 109.46935 * 90.00385 * 1 2 3 29 29 H 1.08999 * 109.46827 * 209.99814 * 1 2 3 30 30 H 1.09001 * 109.47296 * 330.00294 * 1 2 3 31 31 H 1.09000 * 109.47382 * 324.99453 * 3 2 1 32 32 H 1.09003 * 109.46912 * 204.99483 * 3 2 1 33 33 H 0.96996 * 120.00172 * 0.02562 * 7 6 4 34 34 H 1.08998 * 109.87551 * 298.39658 * 16 15 12 35 35 H 1.08999 * 109.88030 * 59.55552 * 16 15 12 36 36 H 1.09003 * 109.47149 * 187.72915 * 19 17 16 37 37 H 1.08997 * 109.47315 * 307.72866 * 19 17 16 38 38 H 1.00899 * 111.00335 * 180.02562 * 20 19 17 39 39 H 1.00906 * 110.99897 * 303.95451 * 20 19 17 40 40 H 1.09004 * 110.36879 * 322.92519 * 27 15 12 41 41 H 1.08993 * 110.37260 * 85.14295 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7658 1.4154 5 1 1.9282 1.1940 2.2331 6 6 3.0005 2.9505 1.6663 7 7 3.5041 3.6466 0.6706 8 14 3.1782 3.5669 3.4208 9 1 3.9230 2.5648 4.2245 10 1 1.8316 3.7735 4.0116 11 1 3.9218 4.8523 3.4208 12 16 2.2931 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5435 14 8 3.5760 -1.1569 -0.5438 15 7 2.5382 -1.8579 1.5826 16 6 3.7024 -1.4848 2.3992 17 6 3.4826 -2.0764 3.8076 18 1 3.8095 -1.3772 4.5774 19 6 4.2098 -3.4149 3.9506 20 7 5.6611 -3.1891 3.9233 21 6 1.9453 -2.2778 3.8662 22 1 1.4398 -1.3508 4.1363 23 6 1.5762 -3.4034 4.8344 24 9 2.1863 -4.5928 4.4214 25 9 2.0173 -3.0753 6.1209 26 9 0.1874 -3.5715 4.8464 27 6 1.6281 -2.6774 2.4034 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6501 2.0043 -0.5895 32 1 3.1858 1.1178 -0.4342 33 1 3.4115 3.3267 -0.2404 34 1 4.6108 -1.8967 1.9596 35 1 3.7780 -0.3993 2.4627 36 1 3.9322 -3.8799 4.8966 37 1 3.9286 -4.0710 3.1269 38 1 6.1642 -4.0588 4.0158 39 1 5.9353 -2.7005 3.0841 40 1 0.5900 -2.4469 2.1639 41 1 1.8265 -3.7375 2.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871811284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:01 Heat of formation + Delta-G solvation = -242.608455 kcal Electronic energy + Delta-G solvation = -31318.093118 eV Core-core repulsion = 26557.958546 eV Total energy + Delta-G solvation = -4760.134572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.23304 -48.70824 -48.60528 -40.29455 -38.49491 -37.44793 -37.06453 -35.42748 -34.66007 -32.85671 -30.25721 -29.32191 -26.73648 -26.61106 -25.73723 -24.42536 -23.12936 -21.45871 -20.35074 -19.59741 -19.42896 -19.12170 -19.03687 -18.36015 -18.04384 -17.26066 -16.91201 -16.62137 -16.01706 -15.62216 -15.60241 -15.38879 -15.28598 -15.16242 -15.06755 -14.92991 -14.80513 -14.68931 -14.38618 -14.19174 -14.07899 -13.95673 -13.77017 -13.49851 -13.39679 -13.36887 -13.20950 -12.96206 -12.60786 -12.40639 -12.36608 -12.31741 -12.11434 -11.92642 -11.79653 -11.28620 -10.52863 -10.19031 -9.77756 -9.63390 -8.59701 -6.36318 -0.53990 1.57196 1.59455 1.65218 1.82443 1.87037 2.39277 2.57883 2.60691 2.69516 2.95254 3.17428 3.21567 3.40834 3.47267 3.64483 3.87751 3.92348 4.05809 4.09332 4.29793 4.35149 4.56413 4.59111 4.64200 4.65642 4.70164 4.82182 4.86627 4.91816 4.96457 5.10034 5.19012 5.31417 5.70221 5.87803 6.15624 6.26696 6.53568 6.54251 7.44581 8.76765 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.005375 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.791169 B = 5208.329024 C = 6167.582421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.998 5.998 3 C 0.244 3.756 4 C -0.611 4.611 5 H 0.070 0.930 6 C -0.027 4.027 7 N -0.937 5.937 8 Si 1.106 2.894 9 H -0.261 1.261 10 H -0.268 1.268 11 H -0.294 1.294 12 S 2.815 3.185 13 O -0.996 6.996 14 O -1.008 7.008 15 N -1.010 6.010 16 C 0.125 3.875 17 C -0.080 4.080 18 H 0.116 0.884 19 C 0.058 3.942 20 N -0.855 5.855 21 C -0.142 4.142 22 H 0.146 0.854 23 C 0.472 3.528 24 F -0.177 7.177 25 F -0.178 7.178 26 F -0.181 7.181 27 C 0.125 3.875 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.256 0.744 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.354 0.646 39 H 0.342 0.658 40 H 0.099 0.901 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -15.069 9.658 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.839 5.839 3 C 0.120 3.880 4 C -0.650 4.650 5 H 0.088 0.912 6 C -0.226 4.226 7 N -0.574 5.574 8 Si 0.928 3.072 9 H -0.185 1.185 10 H -0.193 1.193 11 H -0.220 1.220 12 S 2.825 3.175 13 O -0.980 6.980 14 O -0.992 6.992 15 N -0.850 5.850 16 C -0.001 4.001 17 C -0.100 4.100 18 H 0.134 0.866 19 C -0.072 4.072 20 N -0.387 5.387 21 C -0.163 4.163 22 H 0.164 0.836 23 C 0.418 3.582 24 F -0.159 7.159 25 F -0.159 7.159 26 F -0.162 7.162 27 C -0.001 4.001 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.117 0.883 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.384 -13.919 10.348 17.671 hybrid contribution -0.715 -1.347 -1.881 2.421 sum -4.099 -15.265 8.468 17.931 Atomic orbital electron populations 1.21497 0.77745 1.03554 1.02046 1.57500 1.15756 1.21756 1.88846 1.18915 0.90555 0.81016 0.97493 1.22573 1.39588 1.09706 0.93162 0.91175 1.27156 0.92697 0.94261 1.08457 1.70917 1.44809 1.41131 1.00537 0.83085 0.77569 0.76224 0.70349 1.18520 1.19334 1.21961 1.00732 0.72150 0.72185 0.72445 1.93542 1.67258 1.60119 1.77068 1.93529 1.42726 1.85678 1.77305 1.58831 1.30742 1.65341 1.30106 1.21841 0.87420 1.00863 0.89947 1.22274 0.91287 0.99378 0.97110 0.86590 1.22286 0.88755 0.94292 1.01907 1.58749 1.05009 1.28540 1.46364 1.23754 0.99854 0.98477 0.94258 0.83584 1.20063 0.74392 0.83040 0.80732 1.93160 1.82480 1.50246 1.89993 1.93208 1.89239 1.92449 1.41054 1.93206 1.30489 1.95984 1.96570 1.22076 0.94791 0.96067 0.87130 0.92491 0.90111 0.90670 0.96785 0.96959 0.93452 0.91087 0.91041 0.89355 0.94314 0.83230 0.84452 0.88274 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.03 10.31 127.77 1.32 4.35 16 2 N -1.00 -39.12 3.23 -543.21 -1.75 -40.87 16 3 C 0.24 11.77 4.72 85.63 0.40 12.18 16 4 C -0.61 -30.24 8.95 25.60 0.23 -30.01 16 5 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 6 C -0.03 -1.40 5.46 84.65 0.46 -0.93 16 7 N -0.94 -54.46 13.65 21.45 0.29 -54.17 16 8 Si 1.11 45.60 29.90 68.60 2.05 47.65 16 9 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 10 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 11 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 12 S 2.82 106.20 6.31 -56.49 -0.36 105.85 16 13 O -1.00 -37.81 16.80 -128.00 -2.15 -39.96 16 14 O -1.01 -45.70 16.27 -128.00 -2.08 -47.78 16 15 N -1.01 -30.37 3.75 -506.41 -1.90 -32.27 16 16 C 0.12 3.59 6.42 86.73 0.56 4.15 16 17 C -0.08 -1.76 2.94 -9.61 -0.03 -1.79 16 18 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 19 C 0.06 1.15 4.61 86.30 0.40 1.54 16 20 N -0.85 -16.36 9.62 -186.72 -1.80 -18.16 16 21 C -0.14 -2.83 3.00 -9.40 -0.03 -2.86 16 22 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 23 C 0.47 8.82 2.40 71.98 0.17 9.00 16 24 F -0.18 -3.31 12.58 44.97 0.57 -2.74 16 25 F -0.18 -3.50 16.57 44.97 0.75 -2.76 16 26 F -0.18 -3.49 17.24 44.97 0.78 -2.71 16 27 C 0.12 2.85 6.03 86.86 0.52 3.37 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 30 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.01 0.71 7.98 -2.39 -0.02 0.69 16 32 H 0.01 0.67 6.78 -2.39 -0.02 0.65 16 33 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 34 H 0.07 2.00 6.42 -2.39 -0.02 1.99 16 35 H 0.07 2.45 7.70 -2.39 -0.02 2.44 16 36 H 0.09 1.66 5.61 -2.39 -0.01 1.65 16 37 H 0.04 0.77 7.06 -2.39 -0.02 0.75 16 38 H 0.35 5.37 9.08 -89.69 -0.81 4.55 16 39 H 0.34 6.81 7.37 -89.69 -0.66 6.15 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 1.85 6.99 -2.39 -0.02 1.84 16 Total: -1.00 -65.86 350.54 -1.88 -67.74 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.28 Total: 21.20 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.01 Total: -1.02 kcal Atomic # 7 Polarization: -140.31 SS G_CDS: -5.16 Total: -145.47 kcal Atomic # 8 Polarization: -83.51 SS G_CDS: -4.23 Total: -87.74 kcal Atomic # 9 Polarization: -10.30 SS G_CDS: 2.09 Total: -8.21 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.05 Total: 47.65 kcal Atomic # 16 Polarization: 106.20 SS G_CDS: -0.36 Total: 105.85 kcal Total: -65.86 -1.88 -67.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871811284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.868 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds