Wall clock time and date at job start Wed Apr 1 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00345 * 2 1 4 4 C 1.50701 * 109.46992 * 274.99969 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 S 1.65605 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40321 * 23.53841 * 12 2 1 14 14 O 1.42097 * 106.40157 * 156.45960 * 12 2 1 15 15 N 1.65600 * 107.21849 * 270.00247 * 12 2 1 16 16 C 1.47421 * 125.65188 * 89.99877 * 15 12 2 17 17 C 1.54911 * 104.83061 * 204.09028 * 16 15 12 18 18 H 1.09005 * 111.00518 * 81.06727 * 17 16 15 19 19 C 1.53005 * 111.00466 * 204.87414 * 17 16 15 20 20 N 1.46897 * 109.47003 * 293.55308 * 19 17 16 21 21 C 1.55153 * 101.58313 * 322.99255 * 17 16 15 22 22 H 1.08998 * 110.71768 * 276.95821 * 21 17 16 23 23 C 1.53002 * 110.71716 * 153.86728 * 21 17 16 24 24 F 1.39896 * 109.47425 * 59.99822 * 23 21 17 25 25 F 1.39905 * 109.46677 * 179.97438 * 23 21 17 26 26 F 1.39894 * 109.47201 * 299.99480 * 23 21 17 27 27 C 1.47027 * 125.64341 * 269.69138 * 15 12 2 28 28 H 1.08992 * 109.47370 * 89.99979 * 1 2 3 29 29 H 1.09001 * 109.47101 * 210.00402 * 1 2 3 30 30 H 1.09006 * 109.46957 * 329.99811 * 1 2 3 31 31 H 1.09002 * 109.47391 * 154.99959 * 3 2 1 32 32 H 1.09001 * 109.46813 * 35.00015 * 3 2 1 33 33 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 34 34 H 1.08994 * 110.36755 * 322.93052 * 16 15 12 35 35 H 1.08996 * 110.36432 * 85.14329 * 16 15 12 36 36 H 1.08998 * 109.46380 * 53.55174 * 19 17 16 37 37 H 1.08999 * 109.47281 * 173.54700 * 19 17 16 38 38 H 1.00897 * 111.00676 * 56.04305 * 20 19 17 39 39 H 1.00910 * 110.99396 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.88350 * 298.39177 * 27 15 12 41 41 H 1.08998 * 109.88427 * 59.56042 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 2.9999 2.9508 -1.6664 7 7 3.5027 3.6473 -0.6706 8 14 3.1777 3.5670 -3.4208 9 1 1.8311 3.7726 -4.0121 10 1 3.9204 4.8530 -3.4208 11 1 3.9235 2.5652 -4.2242 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4068 -0.5433 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8581 1.5826 16 6 1.6277 -2.6769 2.4037 17 6 1.9454 -2.2774 3.8663 18 1 1.4404 -1.3500 4.1365 19 6 1.5750 -3.4023 4.8349 20 7 0.1173 -3.5840 4.8399 21 6 3.4828 -2.0766 3.8075 22 1 4.0004 -3.0304 3.9094 23 6 3.9422 -1.0954 4.8878 24 9 3.5998 -1.5959 6.1485 25 9 5.3299 -0.9343 4.8117 26 9 3.3174 0.1407 4.6914 27 6 3.7026 -1.4853 2.3990 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.1859 1.1176 0.4343 32 1 1.6502 2.0042 0.5895 33 1 3.9662 4.4809 -0.8472 34 1 0.5898 -2.4460 2.1643 35 1 1.8257 -3.7372 2.2468 36 1 2.0555 -4.3278 4.5176 37 1 1.9124 -3.1435 5.8385 38 1 -0.2282 -3.7614 3.9086 39 1 -0.1528 -4.3226 5.4722 40 1 4.6108 -1.8976 1.9594 41 1 3.7788 -0.3998 2.4624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871811286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:06 Heat of formation + Delta-G solvation = -223.253599 kcal Electronic energy + Delta-G solvation = -30657.442881 eV Core-core repulsion = 25898.147599 eV Total energy + Delta-G solvation = -4759.295282 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.22500 -47.73142 -47.65845 -39.26694 -36.73471 -35.52806 -35.26171 -34.90477 -32.44746 -31.89242 -29.44980 -27.80407 -25.72206 -25.17584 -24.72152 -22.35356 -21.82056 -20.88184 -18.99414 -18.65321 -18.23980 -17.89846 -17.36234 -16.72244 -16.38300 -16.18682 -15.68718 -15.19369 -14.93545 -14.64359 -14.49818 -14.34024 -14.16166 -14.07084 -13.85645 -13.80699 -13.61493 -13.44171 -13.33341 -13.20581 -12.71173 -12.49429 -12.41321 -12.10909 -11.71504 -11.68046 -11.56166 -11.45836 -11.28465 -11.22745 -11.11053 -11.04780 -10.73366 -10.53451 -10.03734 -9.80527 -9.07485 -9.06752 -8.44120 -8.10575 -6.06496 -4.10882 0.99957 2.54777 3.31349 3.34127 3.37558 3.42035 3.49257 3.59643 3.72641 4.02189 4.15581 4.36541 4.39235 4.44775 4.62829 4.79085 4.88989 4.91472 5.01568 5.18863 5.26692 5.31448 5.46007 5.49600 5.56067 5.62198 5.83671 5.97427 6.02782 6.22548 6.31916 6.52389 6.73336 7.05725 7.18488 7.35355 7.55913 7.90109 8.18888 8.90795 9.54331 11.02004 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.004109 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.019638 B = 6812.779794 C = 7900.836360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.994 5.994 3 C 0.258 3.742 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.792 3.208 13 O -0.988 6.988 14 O -0.954 6.954 15 N -1.021 6.021 16 C 0.129 3.871 17 C -0.093 4.093 18 H 0.109 0.891 19 C 0.068 3.932 20 N -0.849 5.849 21 C -0.145 4.145 22 H 0.128 0.872 23 C 0.462 3.538 24 F -0.182 7.182 25 F -0.180 7.180 26 F -0.172 7.172 27 C 0.130 3.870 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.343 0.657 39 H 0.345 0.655 40 H 0.088 0.912 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -14.513 14.345 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.837 5.837 3 C 0.136 3.864 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.801 3.199 13 O -0.973 6.973 14 O -0.938 6.938 15 N -0.858 5.858 16 C 0.004 3.996 17 C -0.114 4.114 18 H 0.127 0.873 19 C -0.064 4.064 20 N -0.379 5.379 21 C -0.167 4.167 22 H 0.146 0.854 23 C 0.408 3.592 24 F -0.163 7.163 25 F -0.161 7.161 26 F -0.154 7.154 27 C 0.004 3.996 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.107 0.893 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.026 -14.020 13.816 19.915 hybrid contribution 0.372 -0.064 -0.737 0.828 sum -2.654 -14.084 13.079 19.403 Atomic orbital electron populations 1.21226 0.79888 1.01155 1.01527 1.57718 1.14406 1.23431 1.88119 1.19092 0.90925 0.78623 0.97784 1.21427 1.36319 1.06428 0.92823 0.92250 1.24922 0.95055 0.96450 0.97487 1.69907 1.37145 1.15321 1.30980 0.86576 0.78309 0.78016 0.84664 1.20162 1.21138 1.19998 1.01786 0.73562 0.72754 0.71803 1.93542 1.67359 1.60593 1.75758 1.93636 1.40548 1.84846 1.74762 1.59523 1.29272 1.65862 1.31136 1.21934 0.94339 0.95061 0.88309 1.22545 0.91550 1.01640 0.95635 0.87305 1.21828 0.88842 0.95887 0.99802 1.58650 1.11446 1.53158 1.14672 1.23601 0.99817 0.99323 0.93944 0.85370 1.20215 0.75273 0.81438 0.82323 1.93161 1.91996 1.87246 1.43916 1.93215 1.30690 1.95952 1.96287 1.93234 1.82198 1.45113 1.94829 1.21565 0.89641 1.01137 0.87300 0.93007 0.93119 0.91339 0.94578 0.94606 0.92591 0.89860 0.91246 0.94713 0.89740 0.84408 0.84241 0.89345 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.84 10.33 59.85 0.62 2.45 16 2 N -0.99 -20.39 3.23 -123.05 -0.40 -20.79 16 3 C 0.26 6.41 5.12 -5.19 -0.03 6.39 16 4 C -0.53 -14.89 9.38 -34.44 -0.32 -15.21 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 S 2.79 54.32 6.26 -107.50 -0.67 53.65 16 13 O -0.99 -19.85 16.80 -57.17 -0.96 -20.81 16 14 O -0.95 -22.38 16.69 -57.17 -0.95 -23.34 16 15 N -1.02 -14.80 3.75 -111.42 -0.42 -15.22 16 16 C 0.13 1.39 5.68 -2.53 -0.01 1.38 16 17 C -0.09 -0.87 2.58 -88.47 -0.23 -1.10 16 18 H 0.11 1.16 7.55 -51.93 -0.39 0.77 16 19 C 0.07 0.49 6.18 -3.82 -0.02 0.47 16 20 N -0.85 -5.85 9.62 -10.37 -0.10 -5.95 16 21 C -0.15 -1.42 2.45 -88.78 -0.22 -1.64 16 22 H 0.13 0.91 8.04 -51.93 -0.42 0.50 16 23 C 0.46 5.11 2.71 37.16 0.10 5.21 16 24 F -0.18 -1.88 15.65 2.25 0.04 -1.84 16 25 F -0.18 -2.14 17.22 2.25 0.04 -2.10 16 26 F -0.17 -2.30 15.76 2.25 0.04 -2.26 16 27 C 0.13 1.71 6.42 -3.06 -0.02 1.69 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 30 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 31 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 32 H 0.04 0.91 7.96 -51.93 -0.41 0.49 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 36 H 0.03 0.21 8.10 -51.93 -0.42 -0.21 16 37 H 0.08 0.64 6.75 -51.93 -0.35 0.29 16 38 H 0.34 2.15 8.16 -39.29 -0.32 1.83 16 39 H 0.34 1.76 9.08 -39.29 -0.36 1.40 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.23 7.13 -51.93 -0.37 0.86 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -33.84 360.02 -7.96 -41.80 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.48 Total: -1.39 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.23 Total: 1.33 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.18 Total: -67.29 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.91 Total: -44.15 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.11 Total: -6.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 54.32 SS G_CDS: -0.67 Total: 53.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.84 -7.96 -41.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871811286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.449 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds