Wall clock time and date at job start Wed Apr 1 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00345 * 2 1 4 4 C 1.50701 * 109.46992 * 274.99969 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 S 1.65605 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40321 * 23.53841 * 12 2 1 14 14 O 1.42097 * 106.40157 * 156.45960 * 12 2 1 15 15 N 1.65600 * 107.21849 * 270.00247 * 12 2 1 16 16 C 1.47421 * 125.65188 * 89.99877 * 15 12 2 17 17 C 1.54911 * 104.83061 * 204.09028 * 16 15 12 18 18 H 1.09005 * 111.00518 * 81.06727 * 17 16 15 19 19 C 1.53005 * 111.00466 * 204.87414 * 17 16 15 20 20 N 1.46897 * 109.47003 * 293.55308 * 19 17 16 21 21 C 1.55153 * 101.58313 * 322.99255 * 17 16 15 22 22 H 1.08998 * 110.71768 * 276.95821 * 21 17 16 23 23 C 1.53002 * 110.71716 * 153.86728 * 21 17 16 24 24 F 1.39896 * 109.47425 * 59.99822 * 23 21 17 25 25 F 1.39905 * 109.46677 * 179.97438 * 23 21 17 26 26 F 1.39894 * 109.47201 * 299.99480 * 23 21 17 27 27 C 1.47027 * 125.64341 * 269.69138 * 15 12 2 28 28 H 1.08992 * 109.47370 * 89.99979 * 1 2 3 29 29 H 1.09001 * 109.47101 * 210.00402 * 1 2 3 30 30 H 1.09006 * 109.46957 * 329.99811 * 1 2 3 31 31 H 1.09002 * 109.47391 * 154.99959 * 3 2 1 32 32 H 1.09001 * 109.46813 * 35.00015 * 3 2 1 33 33 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 34 34 H 1.08994 * 110.36755 * 322.93052 * 16 15 12 35 35 H 1.08996 * 110.36432 * 85.14329 * 16 15 12 36 36 H 1.08998 * 109.46380 * 53.55174 * 19 17 16 37 37 H 1.08999 * 109.47281 * 173.54700 * 19 17 16 38 38 H 1.00897 * 111.00676 * 56.04305 * 20 19 17 39 39 H 1.00910 * 110.99396 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.88350 * 298.39177 * 27 15 12 41 41 H 1.08998 * 109.88427 * 59.56042 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 2.9999 2.9508 -1.6664 7 7 3.5027 3.6473 -0.6706 8 14 3.1777 3.5670 -3.4208 9 1 1.8311 3.7726 -4.0121 10 1 3.9204 4.8530 -3.4208 11 1 3.9235 2.5652 -4.2242 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4068 -0.5433 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8581 1.5826 16 6 1.6277 -2.6769 2.4037 17 6 1.9454 -2.2774 3.8663 18 1 1.4404 -1.3500 4.1365 19 6 1.5750 -3.4023 4.8349 20 7 0.1173 -3.5840 4.8399 21 6 3.4828 -2.0766 3.8075 22 1 4.0004 -3.0304 3.9094 23 6 3.9422 -1.0954 4.8878 24 9 3.5998 -1.5959 6.1485 25 9 5.3299 -0.9343 4.8117 26 9 3.3174 0.1407 4.6914 27 6 3.7026 -1.4853 2.3990 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.1859 1.1176 0.4343 32 1 1.6502 2.0042 0.5895 33 1 3.9662 4.4809 -0.8472 34 1 0.5898 -2.4460 2.1643 35 1 1.8257 -3.7372 2.2468 36 1 2.0555 -4.3278 4.5176 37 1 1.9124 -3.1435 5.8385 38 1 -0.2282 -3.7614 3.9086 39 1 -0.1528 -4.3226 5.4722 40 1 4.6108 -1.8976 1.9594 41 1 3.7788 -0.3998 2.4624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871811286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:06 Heat of formation + Delta-G solvation = -250.145814 kcal Electronic energy + Delta-G solvation = -30658.609015 eV Core-core repulsion = 25898.147599 eV Total energy + Delta-G solvation = -4760.461416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.14314 -48.62830 -48.61493 -40.17465 -38.37399 -37.25117 -36.92521 -35.60797 -34.52617 -32.83305 -30.27971 -29.69161 -26.83475 -26.64594 -25.62175 -24.23958 -22.77353 -21.65222 -20.24350 -19.60048 -19.25264 -19.10862 -18.72671 -18.46343 -18.01558 -17.37528 -16.83174 -16.43057 -16.02406 -15.81122 -15.51819 -15.34841 -15.25830 -15.03995 -14.99421 -14.86037 -14.77043 -14.69925 -14.53326 -14.17725 -14.08649 -13.97616 -13.66230 -13.39966 -13.30886 -13.23813 -13.07954 -12.98770 -12.70413 -12.50884 -12.41954 -12.40515 -12.07948 -12.01198 -11.86092 -11.78866 -10.61424 -10.22130 -9.82639 -9.54830 -8.21422 -6.33904 -0.50786 1.38680 1.42156 1.49320 1.64125 1.95210 2.38240 2.49617 2.61580 2.74648 2.88107 3.09346 3.24946 3.34824 3.58676 3.75840 3.87080 4.00329 4.08809 4.17261 4.21440 4.39024 4.55769 4.60849 4.64724 4.67849 4.73775 4.86066 4.98572 5.02505 5.07240 5.13906 5.23503 5.44346 5.67310 5.88857 6.08058 6.27697 6.65788 6.73745 7.35092 8.85947 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.004109 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.019638 B = 6812.779794 C = 7900.836360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.003 6.003 3 C 0.274 3.726 4 C -0.551 4.551 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.277 1.277 12 S 2.809 3.191 13 O -0.995 6.995 14 O -1.002 7.002 15 N -1.016 6.016 16 C 0.120 3.880 17 C -0.085 4.085 18 H 0.093 0.907 19 C 0.074 3.926 20 N -0.860 5.860 21 C -0.132 4.132 22 H 0.165 0.835 23 C 0.461 3.539 24 F -0.174 7.174 25 F -0.186 7.186 26 F -0.190 7.190 27 C 0.120 3.880 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.268 0.732 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.347 0.653 39 H 0.356 0.644 40 H 0.094 0.906 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 -16.182 15.003 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.845 5.845 3 C 0.150 3.850 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.202 1.202 12 S 2.819 3.181 13 O -0.979 6.979 14 O -0.986 6.986 15 N -0.857 5.857 16 C -0.004 4.004 17 C -0.106 4.106 18 H 0.111 0.889 19 C -0.058 4.058 20 N -0.392 5.392 21 C -0.153 4.153 22 H 0.183 0.817 23 C 0.407 3.593 24 F -0.155 7.155 25 F -0.167 7.167 26 F -0.172 7.172 27 C -0.006 4.006 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.838 -15.706 14.475 21.701 hybrid contribution 0.583 0.397 -0.842 1.098 sum -3.255 -15.309 13.633 20.756 Atomic orbital electron populations 1.21469 0.77862 1.03325 1.01916 1.57646 1.15862 1.22162 1.88825 1.18614 0.90258 0.80189 0.95950 1.21782 1.36455 1.06772 0.94067 0.92985 1.25744 0.94706 0.96692 1.01488 1.70005 1.37675 1.15712 1.32873 0.85644 0.78840 0.77605 0.79858 1.18801 1.20086 1.20203 1.00968 0.72371 0.72262 0.72530 1.93523 1.67277 1.60321 1.76759 1.93570 1.42772 1.85425 1.76800 1.59024 1.30551 1.65911 1.30185 1.22322 0.94029 0.95774 0.88298 1.22494 0.90811 1.02014 0.95275 0.88854 1.21767 0.89338 0.95674 0.98974 1.58619 1.11253 1.54012 1.15305 1.23618 1.00709 0.99976 0.91004 0.81747 1.20399 0.74901 0.81029 0.82991 1.93175 1.91893 1.86999 1.43466 1.93205 1.31201 1.95974 1.96356 1.93203 1.82504 1.46472 1.94975 1.21687 0.89378 1.00179 0.89335 0.93528 0.89686 0.90497 0.96788 0.95574 0.92336 0.89088 0.88687 0.92540 0.89800 0.83966 0.82988 0.88807 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 10.33 127.77 1.32 4.62 16 2 N -1.00 -41.60 3.23 -543.22 -1.75 -43.36 16 3 C 0.27 14.06 5.12 85.63 0.44 14.50 16 4 C -0.55 -31.61 9.38 25.60 0.24 -31.37 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.77 5.46 84.66 0.46 1.23 16 7 N -0.92 -54.71 13.29 21.45 0.28 -54.43 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 S 2.81 109.31 6.26 -56.49 -0.35 108.96 16 13 O -0.99 -38.88 16.80 -128.00 -2.15 -41.03 16 14 O -1.00 -48.24 16.69 -128.00 -2.14 -50.38 16 15 N -1.02 -28.56 3.75 -506.43 -1.90 -30.46 16 16 C 0.12 2.28 5.68 86.86 0.49 2.77 16 17 C -0.09 -1.40 2.58 -9.40 -0.02 -1.42 16 18 H 0.09 1.86 7.55 -2.38 -0.02 1.85 16 19 C 0.07 0.82 6.18 86.31 0.53 1.36 16 20 N -0.86 -9.33 9.62 -186.72 -1.80 -11.12 16 21 C -0.13 -2.32 2.45 -9.60 -0.02 -2.35 16 22 H 0.16 1.73 8.04 -2.39 -0.02 1.71 16 23 C 0.46 9.72 2.71 71.98 0.20 9.91 16 24 F -0.17 -3.27 15.65 44.97 0.70 -2.57 16 25 F -0.19 -4.28 17.22 44.97 0.77 -3.51 16 26 F -0.19 -5.11 15.76 44.97 0.71 -4.40 16 27 C 0.12 3.12 6.42 86.73 0.56 3.68 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 30 H 0.08 2.39 7.94 -2.38 -0.02 2.37 16 31 H 0.01 0.78 7.61 -2.39 -0.02 0.76 16 32 H 0.03 1.38 7.96 -2.39 -0.02 1.36 16 33 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.10 1.38 8.01 -2.39 -0.02 1.36 16 36 H 0.06 0.42 8.10 -2.39 -0.02 0.40 16 37 H 0.08 0.99 6.75 -2.39 -0.02 0.98 16 38 H 0.35 3.29 8.16 -89.70 -0.73 2.56 16 39 H 0.36 2.58 9.08 -89.69 -0.81 1.76 16 40 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 1.84 7.13 -2.39 -0.02 1.82 16 Total: -1.00 -73.94 360.02 -1.86 -75.80 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -0.46 Total: 6.58 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.19 Total: 2.93 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -5.17 Total: -139.36 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -4.29 Total: -91.41 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 2.19 Total: -10.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 109.31 SS G_CDS: -0.35 Total: 108.96 kcal Total: -73.94 -1.86 -75.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871811286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.348 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds