Wall clock time and date at job start Wed Apr 1 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.74606 * 2 1 4 4 C 1.53810 * 109.75865 * 239.37264 * 2 1 3 5 5 N 1.46968 * 108.58011 * 289.95020 * 4 2 1 6 6 C 1.34776 * 120.59497 * 124.67216 * 5 4 2 7 7 O 1.21276 * 119.99986 * 175.96889 * 6 5 4 8 8 C 1.50703 * 119.99976 * 355.96634 * 6 5 4 9 9 F 1.39898 * 109.46764 * 284.60057 * 8 6 5 10 10 F 1.39898 * 109.47071 * 44.59709 * 8 6 5 11 11 C 1.50701 * 109.47253 * 164.60036 * 8 6 5 12 12 N 1.29026 * 124.91852 * 114.99645 * 11 8 6 13 13 C 1.31781 * 117.12640 * 179.97438 * 12 11 8 14 14 C 1.33636 * 114.49643 * 0.02562 * 13 12 11 15 15 S 1.70980 * 124.91496 * 294.69594 * 11 8 6 16 16 C 1.46960 * 118.81085 * 304.64467 * 5 4 2 17 17 C 1.53368 * 108.63314 * 55.22837 * 16 5 4 18 18 H 1.09000 * 109.75324 * 70.40640 * 17 16 5 19 19 C 1.53008 * 109.61306 * 190.83017 * 17 16 5 20 20 N 1.46959 * 109.60979 * 120.42864 * 2 1 3 21 21 C 1.36935 * 120.59665 * 244.54188 * 20 2 1 22 22 H 1.07996 * 120.00828 * 202.53474 * 21 20 2 23 23 C 1.38818 * 119.99879 * 22.53652 * 21 20 2 24 24 N 1.31616 * 120.00029 * 219.12628 * 23 21 20 25 25 Si 1.86803 * 119.99945 * 38.83570 * 23 21 20 26 26 H 1.48493 * 109.47645 * 275.48498 * 25 23 21 27 27 H 1.48504 * 109.46776 * 35.48390 * 25 23 21 28 28 H 1.48500 * 109.46898 * 155.47977 * 25 23 21 29 29 H 1.09000 * 109.47309 * 299.57661 * 1 2 3 30 30 H 1.08999 * 109.47040 * 59.57178 * 1 2 3 31 31 H 1.08996 * 109.47082 * 179.57050 * 1 2 3 32 32 H 1.08996 * 109.74201 * 170.15970 * 4 2 1 33 33 H 1.09005 * 109.53548 * 49.61447 * 4 2 1 34 34 H 1.07997 * 122.74986 * 179.97438 * 13 12 11 35 35 H 1.08006 * 126.03583 * 179.97438 * 14 13 12 36 36 H 1.09000 * 109.61150 * 295.48330 * 16 5 4 37 37 H 1.08999 * 109.61348 * 174.97047 * 16 5 4 38 38 H 1.08996 * 109.47294 * 179.14572 * 19 17 16 39 39 H 1.09000 * 109.47042 * 299.15144 * 19 17 16 40 40 H 1.09000 * 109.46547 * 59.14273 * 19 17 16 41 41 H 0.97003 * 119.99810 * 179.72435 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0500 -0.7375 -1.2456 5 7 1.7609 -2.1706 -1.0960 6 6 1.0610 -2.8314 -2.0394 7 8 0.8913 -4.0282 -1.9415 8 6 0.4892 -2.0830 -3.2158 9 9 -0.6375 -1.3618 -2.8066 10 9 1.4507 -1.2000 -3.7188 11 6 0.0954 -3.0626 -4.2911 12 7 -1.1127 -3.2723 -4.6927 13 6 -1.2825 -4.1664 -5.6459 14 6 -0.1547 -4.7432 -6.0717 15 16 1.1856 -4.0518 -5.1608 16 6 2.2494 -2.8705 0.1004 17 6 1.7342 -2.1343 1.3433 18 1 0.6586 -2.2825 1.4398 19 6 2.4405 -2.6732 2.5890 20 7 2.0232 -0.7011 1.1937 21 6 2.7344 -0.0299 2.1522 22 1 3.3913 -0.5721 2.8161 23 6 2.6111 1.3477 2.2705 24 7 3.6704 2.0831 2.5335 25 14 0.9429 2.1586 2.0484 26 1 0.6950 2.3932 0.6032 27 1 -0.1153 1.2714 2.5946 28 1 0.9230 3.4557 2.7711 29 1 -0.3634 0.5072 0.8937 30 1 -0.3633 0.5205 -0.8861 31 1 -0.3633 -1.0276 -0.0077 32 1 3.1257 -0.5890 -1.3390 33 1 1.5468 -0.3535 -2.1331 34 1 -2.2534 -4.4132 -6.0492 35 1 -0.0780 -5.4971 -6.8413 36 1 3.3394 -2.8739 0.1028 37 1 1.8779 -3.8952 0.1020 38 1 2.0838 -2.1381 3.4690 39 1 2.2248 -3.7361 2.6978 40 1 3.5162 -2.5294 2.4875 41 1 3.5849 3.0462 2.6122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880455480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:44 Heat of formation + Delta-G solvation = -14.609962 kcal Electronic energy + Delta-G solvation = -30073.051140 eV Core-core repulsion = 25753.572549 eV Total energy + Delta-G solvation = -4319.478590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.62492 -47.49643 -40.17850 -39.82501 -37.88360 -34.42272 -33.11107 -31.83317 -31.73221 -28.88551 -28.24432 -26.76779 -26.18004 -24.55992 -23.47481 -21.44490 -21.03497 -20.50377 -19.19023 -19.01593 -17.96592 -17.65121 -16.99401 -16.25419 -16.18133 -15.48708 -15.31247 -14.94353 -14.84490 -14.71656 -14.50426 -14.32449 -13.96452 -13.77747 -13.58558 -13.40259 -13.24290 -13.07011 -12.76402 -12.42069 -12.11616 -11.84546 -11.67737 -11.60612 -11.34714 -11.17993 -10.81221 -10.63399 -10.35079 -10.33653 -10.11887 -9.98556 -9.85753 -9.68583 -9.43350 -9.36572 -8.92159 -8.32374 -7.13808 -6.12679 -3.26960 0.16744 0.85181 1.31692 2.03882 2.28108 2.48436 3.18283 3.32329 3.48418 3.51021 3.52541 4.03923 4.32252 4.48356 4.64682 4.66638 4.81113 5.07139 5.10855 5.33072 5.38893 5.57856 5.68755 5.69194 5.79177 5.81922 5.96074 6.03506 6.10466 6.16594 6.31320 6.40536 6.45419 6.64566 6.72195 6.87119 6.92901 7.24939 7.27866 7.74181 7.81407 8.21349 8.83508 9.64387 10.01734 11.00729 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003844 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.157697 B = 7282.389984 C = 7834.608193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.148 3.852 3 H 0.099 0.901 4 C 0.068 3.932 5 N -0.565 5.565 6 C 0.483 3.517 7 O -0.509 6.509 8 C 0.374 3.626 9 F -0.151 7.151 10 F -0.166 7.166 11 C -0.025 4.025 12 N -0.432 5.432 13 C 0.037 3.963 14 C -0.249 4.249 15 S 0.215 5.785 16 C 0.099 3.901 17 C 0.155 3.845 18 H 0.036 0.964 19 C -0.136 4.136 20 N -0.590 5.590 21 C -0.275 4.275 22 H 0.095 0.905 23 C 0.040 3.960 24 N -0.873 5.873 25 Si 0.842 3.158 26 H -0.279 1.279 27 H -0.276 1.276 28 H -0.304 1.304 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 -11.968 -16.028 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.040 3.960 3 H 0.116 0.884 4 C -0.055 4.055 5 N -0.295 5.295 6 C 0.263 3.737 7 O -0.385 6.385 8 C 0.331 3.669 9 F -0.131 7.131 10 F -0.147 7.147 11 C -0.303 4.303 12 N -0.147 5.147 13 C -0.115 4.115 14 C -0.388 4.388 15 S 0.468 5.532 16 C -0.024 4.024 17 C 0.048 3.952 18 H 0.054 0.946 19 C -0.193 4.193 20 N -0.312 5.312 21 C -0.402 4.402 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.513 5.513 25 Si 0.670 3.330 26 H -0.206 1.206 27 H -0.203 1.203 28 H -0.232 1.232 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.202 0.798 35 H 0.204 0.796 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.648 -12.211 -15.592 20.138 hybrid contribution -2.160 0.737 -0.455 2.327 sum -5.808 -11.475 -16.048 20.565 Atomic orbital electron populations 1.22514 0.98172 1.01373 1.01539 1.21230 0.92240 0.97040 0.85450 0.88367 1.23186 1.02692 0.78411 1.01239 1.48050 1.50314 1.11371 1.19778 1.20189 0.81347 0.88008 0.84130 1.90754 1.58804 1.12988 1.75951 1.18942 0.77155 0.82043 0.88793 1.93162 1.51059 1.78290 1.90623 1.93034 1.63342 1.69862 1.88458 1.26533 0.94366 1.05066 1.04295 1.66040 1.20465 1.16602 1.11588 1.21837 1.00327 0.94430 0.94935 1.27428 0.95400 1.08204 1.07810 1.84002 1.10358 1.31237 1.27575 1.22539 0.99688 0.96496 0.83699 1.20829 0.96896 0.85288 0.92186 0.94598 1.21773 1.01319 0.98462 0.97788 1.44586 1.63365 1.04054 1.19239 1.18813 1.17825 0.89909 1.13617 0.88799 1.25113 0.96534 0.95836 0.98695 1.70135 1.27421 1.05573 1.48168 0.87716 0.89236 0.78262 0.77750 1.20570 1.20255 1.23209 0.92148 0.93000 0.93174 0.89512 0.88998 0.79819 0.79611 0.90291 0.89353 0.91277 0.93665 0.91844 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.04 37.16 0.30 -3.23 16 2 C 0.15 3.06 2.24 -67.26 -0.15 2.91 16 3 H 0.10 2.23 4.93 -51.93 -0.26 1.97 16 4 C 0.07 1.19 5.44 -3.37 -0.02 1.17 16 5 N -0.57 -9.66 2.59 -172.22 -0.45 -10.11 16 6 C 0.48 8.17 7.15 -10.98 -0.08 8.10 16 7 O -0.51 -9.24 15.39 5.56 0.09 -9.16 16 8 C 0.37 5.91 1.70 -29.03 -0.05 5.86 16 9 F -0.15 -2.55 16.63 2.25 0.04 -2.52 16 10 F -0.17 -2.41 14.05 2.25 0.03 -2.38 16 11 C -0.02 -0.36 5.61 -13.46 -0.08 -0.43 16 12 N -0.43 -6.19 10.25 -11.86 -0.12 -6.32 16 13 C 0.04 0.38 11.35 -19.19 -0.22 0.17 16 14 C -0.25 -2.12 11.36 29.12 0.33 -1.79 16 15 S 0.21 2.36 22.97 -107.50 -2.47 -0.11 16 16 C 0.10 1.65 5.90 -3.60 -0.02 1.62 16 17 C 0.16 2.90 3.22 -67.48 -0.22 2.69 16 18 H 0.04 0.71 7.39 -51.93 -0.38 0.32 16 19 C -0.14 -2.30 7.90 37.16 0.29 -2.01 16 20 N -0.59 -12.94 2.49 -156.76 -0.39 -13.33 16 21 C -0.28 -7.00 8.99 -15.06 -0.14 -7.13 16 22 H 0.09 2.49 6.20 -52.49 -0.33 2.16 16 23 C 0.04 1.07 4.81 -17.43 -0.08 0.98 16 24 N -0.87 -24.97 13.97 55.49 0.78 -24.19 16 25 Si 0.84 20.79 23.40 -169.99 -3.98 16.81 16 26 H -0.28 -6.54 5.92 56.52 0.33 -6.21 16 27 H -0.28 -6.92 6.53 56.52 0.37 -6.55 16 28 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 29 H 0.06 1.31 4.36 -51.93 -0.23 1.08 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.09 1.48 4.54 -51.93 -0.24 1.25 16 34 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.19 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 37 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 38 H 0.07 1.27 7.60 -51.93 -0.39 0.88 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.11 7.43 -51.93 -0.39 0.72 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -30.37 338.42 -6.20 -36.57 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.71 Total: 0.72 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.12 Total: 8.90 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.18 Total: -53.94 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.07 Total: -4.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -3.98 Total: 16.81 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.47 Total: -0.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.37 -6.20 -36.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.964 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds