Wall clock time and date at job start Wed Apr 1 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.74606 * 2 1 4 4 C 1.53810 * 109.75865 * 239.37264 * 2 1 3 5 5 N 1.46968 * 108.58011 * 289.95020 * 4 2 1 6 6 C 1.34776 * 120.59497 * 124.67216 * 5 4 2 7 7 O 1.21276 * 119.99986 * 175.96889 * 6 5 4 8 8 C 1.50703 * 119.99976 * 355.96634 * 6 5 4 9 9 F 1.39898 * 109.46764 * 284.60057 * 8 6 5 10 10 F 1.39898 * 109.47071 * 44.59709 * 8 6 5 11 11 C 1.50701 * 109.47253 * 164.60036 * 8 6 5 12 12 N 1.29026 * 124.91852 * 114.99645 * 11 8 6 13 13 C 1.31781 * 117.12640 * 179.97438 * 12 11 8 14 14 C 1.33636 * 114.49643 * 0.02562 * 13 12 11 15 15 S 1.70980 * 124.91496 * 294.69594 * 11 8 6 16 16 C 1.46960 * 118.81085 * 304.64467 * 5 4 2 17 17 C 1.53368 * 108.63314 * 55.22837 * 16 5 4 18 18 H 1.09000 * 109.75324 * 70.40640 * 17 16 5 19 19 C 1.53008 * 109.61306 * 190.83017 * 17 16 5 20 20 N 1.46959 * 109.60979 * 120.42864 * 2 1 3 21 21 C 1.36935 * 120.59665 * 244.54188 * 20 2 1 22 22 H 1.07996 * 120.00828 * 202.53474 * 21 20 2 23 23 C 1.38818 * 119.99879 * 22.53652 * 21 20 2 24 24 N 1.31616 * 120.00029 * 219.12628 * 23 21 20 25 25 Si 1.86803 * 119.99945 * 38.83570 * 23 21 20 26 26 H 1.48493 * 109.47645 * 275.48498 * 25 23 21 27 27 H 1.48504 * 109.46776 * 35.48390 * 25 23 21 28 28 H 1.48500 * 109.46898 * 155.47977 * 25 23 21 29 29 H 1.09000 * 109.47309 * 299.57661 * 1 2 3 30 30 H 1.08999 * 109.47040 * 59.57178 * 1 2 3 31 31 H 1.08996 * 109.47082 * 179.57050 * 1 2 3 32 32 H 1.08996 * 109.74201 * 170.15970 * 4 2 1 33 33 H 1.09005 * 109.53548 * 49.61447 * 4 2 1 34 34 H 1.07997 * 122.74986 * 179.97438 * 13 12 11 35 35 H 1.08006 * 126.03583 * 179.97438 * 14 13 12 36 36 H 1.09000 * 109.61150 * 295.48330 * 16 5 4 37 37 H 1.08999 * 109.61348 * 174.97047 * 16 5 4 38 38 H 1.08996 * 109.47294 * 179.14572 * 19 17 16 39 39 H 1.09000 * 109.47042 * 299.15144 * 19 17 16 40 40 H 1.09000 * 109.46547 * 59.14273 * 19 17 16 41 41 H 0.97003 * 119.99810 * 179.72435 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0500 -0.7375 -1.2456 5 7 1.7609 -2.1706 -1.0960 6 6 1.0610 -2.8314 -2.0394 7 8 0.8913 -4.0282 -1.9415 8 6 0.4892 -2.0830 -3.2158 9 9 -0.6375 -1.3618 -2.8066 10 9 1.4507 -1.2000 -3.7188 11 6 0.0954 -3.0626 -4.2911 12 7 -1.1127 -3.2723 -4.6927 13 6 -1.2825 -4.1664 -5.6459 14 6 -0.1547 -4.7432 -6.0717 15 16 1.1856 -4.0518 -5.1608 16 6 2.2494 -2.8705 0.1004 17 6 1.7342 -2.1343 1.3433 18 1 0.6586 -2.2825 1.4398 19 6 2.4405 -2.6732 2.5890 20 7 2.0232 -0.7011 1.1937 21 6 2.7344 -0.0299 2.1522 22 1 3.3913 -0.5721 2.8161 23 6 2.6111 1.3477 2.2705 24 7 3.6704 2.0831 2.5335 25 14 0.9429 2.1586 2.0484 26 1 0.6950 2.3932 0.6032 27 1 -0.1153 1.2714 2.5946 28 1 0.9230 3.4557 2.7711 29 1 -0.3634 0.5072 0.8937 30 1 -0.3633 0.5205 -0.8861 31 1 -0.3633 -1.0276 -0.0077 32 1 3.1257 -0.5890 -1.3390 33 1 1.5468 -0.3535 -2.1331 34 1 -2.2534 -4.4132 -6.0492 35 1 -0.0780 -5.4971 -6.8413 36 1 3.3394 -2.8739 0.1028 37 1 1.8779 -3.8952 0.1020 38 1 2.0838 -2.1381 3.4690 39 1 2.2248 -3.7361 2.6978 40 1 3.5162 -2.5294 2.4875 41 1 3.5849 3.0462 2.6122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880455480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:43 Heat of formation + Delta-G solvation = -34.563599 kcal Electronic energy + Delta-G solvation = -30073.916394 eV Core-core repulsion = 25753.572549 eV Total energy + Delta-G solvation = -4320.343845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.80891 -48.69811 -41.49084 -40.77176 -39.39494 -35.99838 -34.65883 -33.71530 -32.69378 -30.34646 -29.56691 -28.15193 -27.55720 -25.91570 -24.93842 -23.02289 -22.24532 -21.49645 -20.79613 -20.05546 -19.35206 -18.78300 -18.21412 -17.88632 -17.53108 -16.96208 -16.52346 -16.34527 -16.24228 -16.06354 -15.65203 -15.47515 -15.26364 -15.17412 -14.97464 -14.80613 -14.62778 -14.42529 -14.17072 -14.00682 -13.58794 -13.26767 -13.10825 -13.01388 -12.74238 -12.59215 -12.37862 -12.27650 -12.04834 -11.93815 -11.65838 -11.40314 -11.26701 -10.94223 -10.68841 -10.61195 -10.19192 -10.02760 -8.96746 -8.19899 -5.28869 -0.67831 0.01263 0.53458 0.72924 1.12450 1.33376 1.46613 1.50821 1.60943 2.10100 2.23304 2.45891 2.85075 2.92181 3.22376 3.24169 3.74163 3.79139 3.91755 4.11655 4.20461 4.27445 4.28949 4.37498 4.38085 4.43414 4.54993 4.61784 4.73527 4.84488 4.94124 5.00455 5.00893 5.03620 5.20854 5.29991 5.48829 5.86743 5.90910 6.19546 6.39345 6.44010 6.90832 7.66940 8.07541 8.97053 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003844 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.157697 B = 7282.389984 C = 7834.608193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 H 0.077 0.923 4 C 0.080 3.920 5 N -0.570 5.570 6 C 0.487 3.513 7 O -0.519 6.519 8 C 0.374 3.626 9 F -0.162 7.162 10 F -0.162 7.162 11 C -0.070 4.070 12 N -0.460 5.460 13 C 0.016 3.984 14 C -0.215 4.215 15 S 0.228 5.772 16 C 0.106 3.894 17 C 0.150 3.850 18 H 0.032 0.968 19 C -0.128 4.128 20 N -0.600 5.600 21 C -0.251 4.251 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.887 3.113 26 H -0.262 1.262 27 H -0.283 1.283 28 H -0.319 1.319 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.215 0.785 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -14.370 -18.581 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 H 0.095 0.905 4 C -0.044 4.044 5 N -0.300 5.300 6 C 0.268 3.732 7 O -0.396 6.396 8 C 0.331 3.669 9 F -0.143 7.143 10 F -0.143 7.143 11 C -0.345 4.345 12 N -0.176 5.176 13 C -0.135 4.135 14 C -0.354 4.354 15 S 0.480 5.520 16 C -0.016 4.016 17 C 0.044 3.956 18 H 0.049 0.951 19 C -0.186 4.186 20 N -0.323 5.323 21 C -0.379 4.379 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.561 5.561 25 Si 0.717 3.283 26 H -0.188 1.188 27 H -0.210 1.210 28 H -0.248 1.248 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.231 0.769 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.521 -14.638 -18.173 23.769 hybrid contribution -1.918 1.288 0.253 2.324 sum -6.439 -13.350 -17.920 23.255 Atomic orbital electron populations 1.22418 0.97497 1.01518 1.01362 1.21274 0.92657 0.96413 0.86341 0.90541 1.22998 1.02937 0.78468 0.99954 1.48064 1.50661 1.11118 1.20130 1.20373 0.80636 0.87922 0.84242 1.90734 1.58998 1.13557 1.76323 1.18860 0.76807 0.82271 0.89007 1.93128 1.51638 1.78628 1.90867 1.93029 1.63176 1.69785 1.88315 1.26307 0.95568 1.06854 1.05800 1.66014 1.20951 1.17824 1.12780 1.22355 1.02298 0.94226 0.94653 1.27978 0.93505 1.07131 1.06798 1.83911 1.10654 1.30312 1.27074 1.22424 1.00064 0.96597 0.82539 1.21023 0.96920 0.83520 0.94123 0.95068 1.21700 1.00473 1.00355 0.96077 1.44715 1.63328 1.05313 1.18989 1.18851 1.16497 0.89719 1.12855 0.90329 1.25456 0.98113 0.96590 1.00211 1.70196 1.28679 1.05560 1.51704 0.86969 0.86307 0.76663 0.78358 1.18820 1.20997 1.24769 0.94051 0.91277 0.92878 0.89128 0.87515 0.76883 0.75244 0.89567 0.88029 0.93228 0.90140 0.92543 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.56 8.04 71.98 0.58 -5.98 16 2 C 0.14 5.70 2.24 45.18 0.10 5.80 16 3 H 0.08 3.46 4.93 -2.39 -0.01 3.45 16 4 C 0.08 2.69 5.44 86.56 0.47 3.16 16 5 N -0.57 -18.53 2.59 -817.17 -2.12 -20.65 16 6 C 0.49 15.68 7.15 87.66 0.63 16.31 16 7 O -0.52 -17.91 15.39 -3.02 -0.05 -17.95 16 8 C 0.37 11.30 1.70 29.10 0.05 11.35 16 9 F -0.16 -5.33 16.63 44.97 0.75 -4.58 16 10 F -0.16 -4.50 14.05 44.97 0.63 -3.86 16 11 C -0.07 -1.90 5.61 88.52 0.50 -1.41 16 12 N -0.46 -12.33 10.25 -191.45 -1.96 -14.29 16 13 C 0.02 0.28 11.35 83.66 0.95 1.23 16 14 C -0.21 -2.78 11.36 66.78 0.76 -2.02 16 15 S 0.23 4.42 22.97 -56.49 -1.30 3.12 16 16 C 0.11 3.35 5.90 86.42 0.51 3.86 16 17 C 0.15 5.45 3.22 45.03 0.15 5.60 16 18 H 0.03 1.19 7.39 -2.39 -0.02 1.17 16 19 C -0.13 -4.21 7.90 71.98 0.57 -3.64 16 20 N -0.60 -26.11 2.49 -649.88 -1.62 -27.73 16 21 C -0.25 -12.91 8.99 84.04 0.76 -12.16 16 22 H 0.08 4.25 6.20 -2.91 -0.02 4.23 16 23 C -0.01 -0.33 4.81 84.86 0.41 0.08 16 24 N -0.92 -53.94 13.97 21.65 0.30 -53.64 16 25 Si 0.89 43.85 23.40 68.60 1.61 45.45 16 26 H -0.26 -12.06 5.92 99.48 0.59 -11.47 16 27 H -0.28 -14.13 6.53 99.48 0.65 -13.48 16 28 H -0.32 -16.38 7.11 99.48 0.71 -15.67 16 29 H 0.04 1.75 4.36 -2.39 -0.01 1.74 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 2.00 7.01 -2.39 -0.02 1.98 16 32 H 0.09 2.98 8.14 -2.39 -0.02 2.97 16 33 H 0.11 3.29 4.54 -2.38 -0.01 3.28 16 34 H 0.21 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.23 0.79 8.06 -2.91 -0.02 0.76 16 36 H 0.09 2.61 8.12 -2.39 -0.02 2.59 16 37 H 0.10 2.97 7.01 -2.39 -0.02 2.95 16 38 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 1.92 7.43 -2.39 -0.02 1.91 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -66.77 338.42 3.58 -63.19 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.91 Total: 8.76 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.42 Total: 22.17 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -5.39 Total: -116.31 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 1.38 Total: -8.44 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.61 Total: 45.45 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.30 Total: 3.12 kcal Total: -66.77 3.58 -63.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.629 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds