Wall clock time and date at job start Wed Apr 1 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47061 * 2 1 4 4 C 1.50704 * 109.46814 * 119.99944 * 2 1 3 5 5 H 1.08001 * 120.00293 * 120.00392 * 4 2 1 6 6 C 1.37879 * 119.99781 * 299.99706 * 4 2 1 7 7 N 1.31509 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99654 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47377 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46527 * 120.00591 * 8 6 4 11 11 H 1.48499 * 109.47195 * 240.00165 * 8 6 4 12 12 N 1.46897 * 109.47136 * 239.99581 * 2 1 3 13 13 C 1.46899 * 111.00236 * 306.04385 * 12 2 1 14 14 C 1.46897 * 110.99970 * 70.00600 * 12 2 1 15 15 C 1.50700 * 109.47291 * 169.99568 * 14 12 2 16 16 S 1.76161 * 125.95390 * 270.31242 * 15 14 12 17 17 C 1.70963 * 90.36677 * 180.02562 * 16 15 14 18 18 N 1.38604 * 124.94069 * 179.97438 * 17 16 15 19 19 C 1.47018 * 110.99995 * 179.72635 * 18 17 16 20 20 C 1.53095 * 109.29409 * 177.62978 * 19 18 17 21 21 O 1.43016 * 109.25799 * 56.82300 * 20 19 18 22 22 C 1.43015 * 113.74083 * 301.33083 * 21 20 19 23 23 C 1.47014 * 111.03713 * 56.06436 * 18 17 16 24 24 N 1.29710 * 110.11612 * 359.66861 * 17 16 15 25 25 C 1.32144 * 116.86559 * 0.26320 * 24 17 16 26 26 Cl 1.73596 * 122.72457 * 179.97438 * 25 24 17 27 27 H 1.09006 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47761 * 300.00188 * 1 2 3 29 29 H 1.08998 * 109.47147 * 60.00578 * 1 2 3 30 30 H 0.97003 * 120.00338 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46959 * 183.95116 * 13 12 2 32 32 H 1.08991 * 109.47644 * 303.95681 * 13 12 2 33 33 H 1.08998 * 109.46812 * 63.96205 * 13 12 2 34 34 H 1.08994 * 109.47435 * 49.99632 * 14 12 2 35 35 H 1.09006 * 109.46792 * 289.99514 * 14 12 2 36 36 H 1.09002 * 109.50864 * 57.67214 * 19 18 17 37 37 H 1.09003 * 109.50425 * 297.58853 * 19 18 17 38 38 H 1.08994 * 109.50879 * 176.75852 * 20 19 18 39 39 H 1.09001 * 109.51139 * 296.84757 * 20 19 18 40 40 H 1.09007 * 109.50192 * 178.60261 * 22 21 20 41 41 H 1.08993 * 109.50392 * 298.68643 * 22 21 20 42 42 H 1.09006 * 109.46615 * 62.41325 * 23 18 17 43 43 H 1.08996 * 109.54154 * 302.33418 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.1461 -2.2870 3.6040 10 1 3.1463 -0.1872 4.8166 11 1 1.1658 -1.5866 4.8161 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0356 -1.3077 14 6 1.7530 0.0971 -2.4090 15 6 2.4776 -0.5164 -3.5793 16 16 4.1162 -0.1310 -4.0987 17 6 3.9881 -1.2591 -5.3769 18 7 4.9859 -1.5292 -6.3003 19 6 4.5517 -2.5545 -7.2603 20 6 5.6577 -2.7795 -8.2948 21 8 6.8657 -3.1445 -7.6220 22 6 7.3183 -2.1676 -6.6806 23 6 6.2292 -1.9365 -5.6298 24 7 2.8237 -1.8302 -5.3529 25 6 1.9921 -1.4509 -4.3986 26 17 0.3972 -2.1141 -4.2252 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.7080 1.1610 3.4844 31 1 1.8665 -2.5522 -2.1647 32 1 1.6465 -2.5988 -0.3990 33 1 0.3556 -1.9521 -1.4399 34 1 2.1026 1.1187 -2.2604 35 1 0.6814 0.1052 -2.6087 36 1 3.6446 -2.2207 -7.7640 37 1 4.3525 -3.4869 -6.7318 38 1 5.3634 -3.5795 -8.9741 39 1 5.8186 -1.8621 -8.8609 40 1 8.2250 -2.5252 -6.1925 41 1 7.5288 -1.2325 -7.1994 42 1 6.0573 -2.8587 -5.0747 43 1 6.5468 -1.1521 -4.9428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894002946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:43 Heat of formation + Delta-G solvation = 22.453493 kcal Electronic energy + Delta-G solvation = -26023.829663 eV Core-core repulsion = 22257.754945 eV Total energy + Delta-G solvation = -3766.074718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65265 -39.31812 -37.39552 -36.53885 -35.74463 -33.01143 -31.70726 -30.86974 -28.66747 -27.92895 -26.27163 -25.25005 -24.64216 -24.28203 -22.83202 -21.30753 -19.77023 -19.31616 -18.36360 -17.07582 -16.48461 -16.21371 -15.91722 -15.56770 -15.48066 -15.20477 -15.04878 -14.76412 -14.49417 -13.87607 -13.73938 -13.53698 -12.81714 -12.63957 -12.33429 -12.11141 -11.99402 -11.86770 -11.78120 -11.49529 -11.20416 -11.13750 -11.00076 -10.95529 -10.73711 -10.63013 -10.49494 -10.28598 -10.05557 -9.98786 -9.83053 -9.65951 -9.22202 -8.92796 -8.41830 -8.18318 -7.24638 -6.03993 -4.07536 0.62680 0.99223 1.35335 2.30874 2.52889 3.26012 3.28295 3.36473 3.41127 3.46024 4.29773 4.39250 4.48838 4.62398 4.71794 4.78694 4.89524 4.96730 5.07683 5.23551 5.24552 5.28412 5.33158 5.38634 5.51067 5.61651 5.92210 6.03285 6.08569 6.20094 6.39612 6.42936 6.63994 6.68932 6.80106 6.87264 7.06407 7.37645 7.46129 7.67076 7.79638 8.04710 8.31693 8.51482 8.98367 9.57552 11.03090 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.002923 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.363649 B = 9575.264567 C =10501.764067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.040 0.960 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.123 3.877 15 C -0.187 4.187 16 S 0.209 5.791 17 C 0.204 3.796 18 N -0.444 5.444 19 C 0.030 3.970 20 C 0.062 3.938 21 O -0.383 6.383 22 C 0.067 3.933 23 C 0.014 3.986 24 N -0.504 5.504 25 C 0.123 3.877 26 Cl -0.007 7.007 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.007 0.993 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -3.393 -19.946 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.251 5.251 13 C -0.114 4.114 14 C -0.008 4.008 15 C -0.312 4.312 16 S 0.461 5.539 17 C -0.165 4.165 18 N -0.166 5.166 19 C -0.099 4.099 20 C -0.015 4.015 21 O -0.301 6.301 22 C -0.010 4.010 23 C -0.114 4.114 24 N -0.226 5.226 25 C -0.036 4.036 26 Cl 0.021 6.979 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.525 -2.862 -20.112 22.437 hybrid contribution -2.104 -1.145 1.253 2.704 sum 7.421 -4.007 -18.859 20.659 Atomic orbital electron populations 1.22414 1.00618 0.99611 1.00556 1.19351 0.89941 0.94461 0.85654 0.94240 1.21111 1.30514 1.12481 0.89449 0.91871 1.24915 0.95228 0.95131 0.98978 1.69887 1.37053 1.23093 1.23342 0.86470 0.78542 0.79685 0.82898 1.19743 1.21057 1.21188 1.62446 1.58995 1.02524 1.01129 1.22340 0.96490 0.91449 1.01157 1.20478 0.96388 0.96960 0.86929 1.25642 0.97924 1.03587 1.04015 1.83969 1.11498 1.37767 1.20630 1.24585 0.93760 0.99865 0.98298 1.59418 1.01805 1.42538 1.12886 1.22785 0.99425 0.93691 0.94007 1.22779 0.83486 1.01572 0.93658 1.88022 1.41377 1.44634 1.56071 1.22686 0.95686 0.93152 0.89523 1.23173 0.88815 1.01861 0.97518 1.66127 1.03181 1.28224 1.25089 1.19891 0.91031 0.97974 0.94717 1.98385 1.17986 1.85032 1.96510 0.94844 0.89235 0.97428 0.93036 0.94023 0.90915 0.95913 0.89813 0.92582 0.88337 0.91818 0.87697 0.91956 0.87420 0.91669 0.91828 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.22 37.16 0.31 -3.76 16 2 C 0.21 5.13 2.31 -68.87 -0.16 4.97 16 3 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 4 C -0.50 -13.26 7.91 -34.44 -0.27 -13.53 16 5 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.53 -11.00 4.69 -237.74 -1.12 -12.11 16 13 C 0.03 0.68 7.35 60.06 0.44 1.12 16 14 C 0.12 2.19 4.79 -4.98 -0.02 2.16 16 15 C -0.19 -3.01 5.49 -35.99 -0.20 -3.21 16 16 S 0.21 2.78 22.34 -107.50 -2.40 0.38 16 17 C 0.20 2.72 6.74 -87.67 -0.59 2.13 16 18 N -0.44 -4.85 4.79 -175.07 -0.84 -5.69 16 19 C 0.03 0.30 4.96 -3.71 -0.02 0.28 16 20 C 0.06 0.49 7.01 37.21 0.26 0.75 16 21 O -0.38 -3.56 10.83 -35.23 -0.38 -3.94 16 22 C 0.07 0.49 7.01 37.21 0.26 0.75 16 23 C 0.01 0.13 5.48 -3.71 -0.02 0.11 16 24 N -0.50 -7.69 9.52 -12.29 -0.12 -7.80 16 25 C 0.12 1.96 6.34 -19.10 -0.12 1.84 16 26 Cl -0.01 -0.11 25.97 -51.86 -1.35 -1.46 16 27 H 0.03 0.77 6.42 -51.93 -0.33 0.43 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 29 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.04 0.78 5.66 -51.93 -0.29 0.48 16 32 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 33 H 0.02 0.44 6.10 -51.93 -0.32 0.13 16 34 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 35 H 0.06 1.01 6.51 -51.93 -0.34 0.67 16 36 H 0.10 1.01 8.01 -51.93 -0.42 0.59 16 37 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.78 7.48 -51.93 -0.39 0.40 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -29.28 359.28 -11.39 -40.67 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.98 Total: -2.32 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.23 Total: -4.90 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -1.44 Total: -49.89 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.38 Total: -3.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.40 Total: 0.38 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.35 Total: -1.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.28 -11.39 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894002946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.125 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds