Wall clock time and date at job start Wed Apr 1 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47061 * 2 1 4 4 C 1.50704 * 109.46814 * 119.99944 * 2 1 3 5 5 H 1.08001 * 120.00293 * 120.00392 * 4 2 1 6 6 C 1.37879 * 119.99781 * 299.99706 * 4 2 1 7 7 N 1.31509 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99654 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47377 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46527 * 120.00591 * 8 6 4 11 11 H 1.48499 * 109.47195 * 240.00165 * 8 6 4 12 12 N 1.46897 * 109.47136 * 239.99581 * 2 1 3 13 13 C 1.46899 * 111.00236 * 306.04385 * 12 2 1 14 14 C 1.46897 * 110.99970 * 70.00600 * 12 2 1 15 15 C 1.50700 * 109.47291 * 169.99568 * 14 12 2 16 16 S 1.76161 * 125.95390 * 270.31242 * 15 14 12 17 17 C 1.70963 * 90.36677 * 180.02562 * 16 15 14 18 18 N 1.38604 * 124.94069 * 179.97438 * 17 16 15 19 19 C 1.47018 * 110.99995 * 179.72635 * 18 17 16 20 20 C 1.53095 * 109.29409 * 177.62978 * 19 18 17 21 21 O 1.43016 * 109.25799 * 56.82300 * 20 19 18 22 22 C 1.43015 * 113.74083 * 301.33083 * 21 20 19 23 23 C 1.47014 * 111.03713 * 56.06436 * 18 17 16 24 24 N 1.29710 * 110.11612 * 359.66861 * 17 16 15 25 25 C 1.32144 * 116.86559 * 0.26320 * 24 17 16 26 26 Cl 1.73596 * 122.72457 * 179.97438 * 25 24 17 27 27 H 1.09006 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47761 * 300.00188 * 1 2 3 29 29 H 1.08998 * 109.47147 * 60.00578 * 1 2 3 30 30 H 0.97003 * 120.00338 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46959 * 183.95116 * 13 12 2 32 32 H 1.08991 * 109.47644 * 303.95681 * 13 12 2 33 33 H 1.08998 * 109.46812 * 63.96205 * 13 12 2 34 34 H 1.08994 * 109.47435 * 49.99632 * 14 12 2 35 35 H 1.09006 * 109.46792 * 289.99514 * 14 12 2 36 36 H 1.09002 * 109.50864 * 57.67214 * 19 18 17 37 37 H 1.09003 * 109.50425 * 297.58853 * 19 18 17 38 38 H 1.08994 * 109.50879 * 176.75852 * 20 19 18 39 39 H 1.09001 * 109.51139 * 296.84757 * 20 19 18 40 40 H 1.09007 * 109.50192 * 178.60261 * 22 21 20 41 41 H 1.08993 * 109.50392 * 298.68643 * 22 21 20 42 42 H 1.09006 * 109.46615 * 62.41325 * 23 18 17 43 43 H 1.08996 * 109.54154 * 302.33418 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.1461 -2.2870 3.6040 10 1 3.1463 -0.1872 4.8166 11 1 1.1658 -1.5866 4.8161 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0356 -1.3077 14 6 1.7530 0.0971 -2.4090 15 6 2.4776 -0.5164 -3.5793 16 16 4.1162 -0.1310 -4.0987 17 6 3.9881 -1.2591 -5.3769 18 7 4.9859 -1.5292 -6.3003 19 6 4.5517 -2.5545 -7.2603 20 6 5.6577 -2.7795 -8.2948 21 8 6.8657 -3.1445 -7.6220 22 6 7.3183 -2.1676 -6.6806 23 6 6.2292 -1.9365 -5.6298 24 7 2.8237 -1.8302 -5.3529 25 6 1.9921 -1.4509 -4.3986 26 17 0.3972 -2.1141 -4.2252 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.7080 1.1610 3.4844 31 1 1.8665 -2.5522 -2.1647 32 1 1.6465 -2.5988 -0.3990 33 1 0.3556 -1.9521 -1.4399 34 1 2.1026 1.1187 -2.2604 35 1 0.6814 0.1052 -2.6087 36 1 3.6446 -2.2207 -7.7640 37 1 4.3525 -3.4869 -6.7318 38 1 5.3634 -3.5795 -8.9741 39 1 5.8186 -1.8621 -8.8609 40 1 8.2250 -2.5252 -6.1925 41 1 7.5288 -1.2325 -7.1994 42 1 6.0573 -2.8587 -5.0747 43 1 6.5468 -1.1521 -4.9428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894002946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:42 Heat of formation + Delta-G solvation = 3.015241 kcal Electronic energy + Delta-G solvation = -26024.672569 eV Core-core repulsion = 22257.754945 eV Total energy + Delta-G solvation = -3766.917624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61459 -40.28840 -38.94291 -37.73757 -36.69388 -34.89981 -32.47683 -32.27347 -30.13145 -29.16504 -27.64656 -27.25434 -25.48795 -25.38792 -24.26181 -22.14736 -21.26706 -20.59317 -19.50787 -18.28355 -17.95102 -17.32991 -17.08598 -16.69058 -16.57526 -16.24849 -16.14470 -15.87907 -15.63557 -15.40153 -15.06784 -14.96881 -14.37073 -13.92969 -13.59679 -13.45431 -13.20400 -13.12856 -12.87587 -12.76103 -12.71369 -12.59497 -12.45330 -12.38980 -12.19404 -12.14203 -11.94873 -11.82937 -11.71765 -11.17922 -10.97952 -10.85398 -10.62380 -10.48133 -10.30498 -9.29553 -8.90981 -8.09491 -6.19520 -0.51499 -0.12008 0.21198 1.14107 1.36177 1.41933 1.44823 1.55727 2.34541 2.44175 2.86284 3.20054 3.35384 3.46364 3.73885 3.83103 3.87454 3.97008 4.09185 4.17677 4.21083 4.40131 4.48417 4.55511 4.61033 4.66002 4.73958 4.75178 4.81374 4.85991 4.90867 4.91776 5.13914 5.15388 5.26280 5.46856 5.50819 5.70952 5.78862 6.08760 6.17401 6.34353 6.43878 6.65150 6.92418 7.49288 8.96537 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.002923 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.363649 B = 9575.264567 C =10501.764067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.218 3.782 3 H 0.015 0.985 4 C -0.510 4.510 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.534 5.534 13 C 0.046 3.954 14 C 0.130 3.870 15 C -0.218 4.218 16 S 0.247 5.753 17 C 0.212 3.788 18 N -0.442 5.442 19 C 0.032 3.968 20 C 0.067 3.933 21 O -0.399 6.399 22 C 0.068 3.932 23 C 0.011 3.989 24 N -0.525 5.525 25 C 0.124 3.876 26 Cl -0.009 7.009 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 -3.821 -21.161 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.111 3.889 3 H 0.033 0.967 4 C -0.549 4.549 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.258 5.258 13 C -0.102 4.102 14 C 0.000 4.000 15 C -0.342 4.342 16 S 0.501 5.499 17 C -0.157 4.157 18 N -0.164 5.164 19 C -0.097 4.097 20 C -0.010 4.010 21 O -0.317 6.317 22 C -0.009 4.009 23 C -0.116 4.116 24 N -0.248 5.248 25 C -0.035 4.035 26 Cl 0.019 6.981 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.118 -3.291 -21.347 24.293 hybrid contribution -2.513 -1.006 1.505 3.097 sum 8.605 -4.297 -19.842 22.051 Atomic orbital electron populations 1.22219 1.00200 0.99293 1.00141 1.19095 0.90094 0.93133 0.86579 0.96708 1.21348 1.30457 1.12346 0.90754 0.92715 1.25615 0.95437 0.95789 1.01598 1.70000 1.37845 1.24136 1.23923 0.85543 0.78021 0.78682 0.79587 1.19416 1.20658 1.20904 1.62309 1.59097 1.02954 1.01395 1.22204 0.96520 0.90853 1.00616 1.20348 0.96720 0.96746 0.86203 1.25449 0.99781 1.04854 1.04146 1.83771 1.09251 1.37007 1.19921 1.24971 0.93707 0.99040 0.97984 1.59520 1.01760 1.42749 1.12418 1.22820 1.00366 0.92474 0.94054 1.22860 0.82273 1.02881 0.92990 1.88009 1.41682 1.45597 1.56439 1.22852 0.95488 0.93618 0.88932 1.23329 0.88306 1.01656 0.98297 1.66184 1.03891 1.29172 1.25522 1.19998 0.91089 0.97653 0.94803 1.98379 1.18206 1.85034 1.96510 0.94973 0.91822 0.95546 0.92984 0.92803 0.92768 0.95817 0.89636 0.92815 0.88769 0.93453 0.85949 0.90763 0.85344 0.90360 0.92942 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.55 8.22 71.98 0.59 -6.96 16 2 C 0.22 10.69 2.31 44.17 0.10 10.79 16 3 H 0.02 0.80 7.93 -2.39 -0.02 0.79 16 4 C -0.51 -27.50 7.91 25.60 0.20 -27.30 16 5 H 0.05 2.99 7.12 -2.91 -0.02 2.96 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -51.72 11.32 21.45 0.24 -51.48 16 8 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.53 -22.29 4.69 -906.08 -4.25 -26.54 16 13 C 0.05 1.84 7.35 127.69 0.94 2.78 16 14 C 0.13 4.58 4.79 85.56 0.41 4.99 16 15 C -0.22 -6.83 5.49 24.59 0.14 -6.69 16 16 S 0.25 6.23 22.34 -56.49 -1.26 4.97 16 17 C 0.21 5.36 6.74 179.32 1.21 6.57 16 18 N -0.44 -8.87 4.79 -707.79 -3.39 -12.26 16 19 C 0.03 0.59 4.96 86.31 0.43 1.02 16 20 C 0.07 0.89 7.01 72.01 0.50 1.40 16 21 O -0.40 -6.43 10.83 -148.98 -1.61 -8.05 16 22 C 0.07 0.81 7.01 72.01 0.50 1.32 16 23 C 0.01 0.18 5.48 86.31 0.47 0.65 16 24 N -0.53 -15.51 9.52 -192.81 -1.84 -17.35 16 25 C 0.12 3.89 6.34 83.55 0.53 4.41 16 26 Cl -0.01 -0.29 25.97 -2.72 -0.07 -0.36 16 27 H 0.03 1.48 6.42 -2.38 -0.02 1.47 16 28 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 29 H 0.03 1.10 6.91 -2.39 -0.02 1.09 16 30 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.05 1.99 5.66 -2.38 -0.01 1.97 16 32 H 0.05 2.33 6.76 -2.39 -0.02 2.31 16 33 H 0.02 0.92 6.10 -2.39 -0.01 0.91 16 34 H 0.09 2.94 7.93 -2.39 -0.02 2.92 16 35 H 0.05 1.91 6.51 -2.38 -0.02 1.89 16 36 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 37 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.13 1.00 8.14 -2.38 -0.02 0.99 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.11 1.48 7.48 -2.39 -0.02 1.46 16 Total: -1.00 -62.05 359.28 -2.65 -64.70 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.03 Total: 6.88 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 6.48 Total: -5.81 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -9.24 Total: -107.62 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -1.61 Total: -8.05 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.26 Total: 4.97 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.07 Total: -0.36 kcal Total: -62.05 -2.65 -64.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894002946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.717 kcal (2) G-P(sol) polarization free energy of solvation -62.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds