Wall clock time and date at job start Wed Apr 1 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00315 * 2 1 4 4 O 1.21587 * 120.00015 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00048 * 179.97438 * 3 2 1 6 6 C 1.39977 * 119.99946 * 185.32017 * 5 3 2 7 7 C 1.38986 * 119.99639 * 213.31575 * 6 5 3 8 8 C 1.38209 * 120.22579 * 180.02562 * 7 6 5 9 9 C 1.38023 * 120.21818 * 359.69580 * 8 7 6 10 10 C 1.39573 * 119.99542 * 0.55684 * 9 8 7 11 11 C 1.47857 * 120.11198 * 179.74640 * 10 9 8 12 12 O 1.21558 * 120.00039 * 179.72526 * 11 10 9 13 13 N 1.34783 * 120.00230 * 359.97438 * 11 10 9 14 14 C 1.46497 * 120.00135 * 179.72304 * 13 11 10 15 15 H 1.09000 * 109.47097 * 35.00936 * 14 13 11 16 16 C 1.50701 * 109.46963 * 155.00178 * 14 13 11 17 17 H 1.08004 * 119.99840 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00239 * 179.97438 * 16 14 13 19 19 N 1.31510 * 119.99768 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00061 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46764 * 120.00504 * 20 18 16 23 23 H 1.48496 * 109.47214 * 240.00062 * 20 18 16 24 24 C 1.52999 * 109.47221 * 275.00570 * 14 13 11 25 25 F 1.39895 * 109.47218 * 60.00035 * 24 14 13 26 26 F 1.39900 * 109.46611 * 180.02562 * 24 14 13 27 27 F 1.39896 * 109.47025 * 299.99730 * 24 14 13 28 28 C 1.38582 * 120.00253 * 33.33541 * 6 5 3 29 29 H 1.09004 * 109.47787 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47272 * 300.00366 * 1 2 3 31 31 H 1.09001 * 109.47310 * 59.99577 * 1 2 3 32 32 H 0.97003 * 119.99798 * 179.97438 * 2 1 3 33 33 H 0.97002 * 120.00380 * 5.31668 * 5 3 2 34 34 H 1.08001 * 119.89208 * 0.02562 * 7 6 5 35 35 H 1.07995 * 119.89419 * 179.97438 * 8 7 6 36 36 H 1.08004 * 120.00433 * 180.27722 * 9 8 7 37 37 H 0.97003 * 119.99384 * 359.73451 * 13 11 10 38 38 H 0.97000 * 119.99990 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.10674 * 359.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.1865 2.3741 0.1129 7 6 5.4053 2.5336 -0.5358 8 6 6.1006 3.7232 -0.4276 9 6 5.5862 4.7629 0.3203 10 6 4.3656 4.6109 0.9799 11 6 3.8149 5.7211 1.7863 12 8 2.7493 5.5882 2.3558 13 7 4.4920 6.8822 1.8859 14 6 3.9434 7.9843 2.6799 15 1 3.4171 7.5817 3.5454 16 6 5.0659 8.8759 3.1447 17 1 6.0860 8.6449 2.8752 18 6 4.7908 9.9871 3.9132 19 7 3.5487 10.2686 4.2410 20 14 6.1822 11.0926 4.4887 21 1 7.4756 10.5614 3.9887 22 1 5.9742 12.4652 3.9614 23 1 6.2027 11.1305 5.9730 24 6 2.9695 8.7952 1.8226 25 9 1.9275 7.9675 1.3912 26 9 2.4462 9.8480 2.5809 27 9 3.6451 9.3120 0.7119 28 6 3.6644 3.4098 0.8713 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.9499 -0.8401 0.0004 33 1 3.9717 0.3306 -0.0769 34 1 5.8105 1.7253 -1.1264 35 1 7.0474 3.8411 -0.9335 36 1 6.1304 5.6926 0.3988 37 1 5.3425 6.9881 1.4316 38 1 3.3551 11.0502 4.7819 39 1 2.7175 3.2878 1.3760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928801220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:35 Heat of formation + Delta-G solvation = -163.081166 kcal Electronic energy + Delta-G solvation = -30572.367807 eV Core-core repulsion = 25680.237846 eV Total energy + Delta-G solvation = -4892.129961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.28312 -45.93439 -45.55249 -40.81315 -39.43522 -37.95840 -35.04400 -34.75271 -34.64938 -32.58058 -31.08037 -29.91497 -28.20719 -26.66961 -24.58433 -23.84878 -22.79315 -21.40466 -21.01798 -19.92076 -18.89056 -18.44162 -17.00029 -16.84241 -16.57024 -16.42366 -16.04215 -15.88167 -15.54439 -15.21211 -14.85572 -14.76590 -14.43097 -14.05566 -13.92102 -13.63264 -13.29100 -13.06783 -12.85850 -12.55574 -12.51890 -12.41424 -12.32885 -12.24139 -11.97653 -11.84579 -11.76593 -11.50510 -11.15596 -10.85032 -10.77627 -10.53892 -10.38380 -10.23009 -9.61910 -9.44503 -9.27105 -8.87903 -8.70444 -8.24214 -8.15908 -6.20978 -4.45032 0.97773 1.37723 2.34230 2.87796 3.19596 3.26692 3.30290 3.32223 3.74580 3.94061 4.13015 4.24023 4.63607 4.82783 4.89092 4.91060 4.96323 5.20457 5.25080 5.27910 5.43669 5.51697 5.56713 5.85478 5.91745 5.93072 6.07390 6.12996 6.26455 6.28189 6.39926 6.53224 6.63114 6.95326 6.99433 7.20939 7.50103 7.61782 7.65495 8.29128 8.34757 8.52640 8.90917 9.22628 10.70717 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002964 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.013376 B = 9443.911439 C =10302.843967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.747 5.747 3 C 0.696 3.304 4 O -0.558 6.558 5 N -0.686 5.686 6 C 0.151 3.849 7 C -0.131 4.131 8 C -0.107 4.107 9 C -0.103 4.103 10 C -0.101 4.101 11 C 0.546 3.454 12 O -0.526 6.526 13 N -0.705 5.705 14 C 0.244 3.756 15 H 0.087 0.913 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.417 3.583 25 F -0.216 7.216 26 F -0.137 7.137 27 F -0.209 7.209 28 C -0.064 4.064 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.397 0.603 33 H 0.405 0.595 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.398 0.602 38 H 0.268 0.732 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 -20.279 -9.181 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.403 5.403 3 C 0.396 3.604 4 O -0.432 6.432 5 N -0.334 5.334 6 C 0.057 3.943 7 C -0.152 4.152 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.105 4.105 11 C 0.332 3.668 12 O -0.403 6.403 13 N -0.355 5.355 14 C 0.139 3.861 15 H 0.104 0.896 16 C -0.589 4.589 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.360 3.640 25 F -0.198 7.198 26 F -0.118 7.118 27 F -0.191 7.191 28 C -0.085 4.085 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.241 0.759 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.233 0.767 38 H 0.078 0.922 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.991 -19.256 -8.641 21.200 hybrid contribution 1.280 -0.029 -0.254 1.305 sum 3.272 -19.286 -8.894 21.488 Atomic orbital electron populations 1.21458 0.77570 1.02090 1.02832 1.44894 1.08034 1.06800 1.80570 1.16012 0.81429 0.84733 0.78210 1.91066 1.67230 1.29774 1.55175 1.42513 1.04998 1.08471 1.77387 1.17312 0.92789 0.86454 0.97735 1.20930 0.95304 0.98826 1.00108 1.20825 0.99987 0.92443 0.99309 1.21390 0.94832 0.99391 0.96614 1.20012 0.95598 0.94943 0.99940 1.18264 0.84732 0.82605 0.81174 1.90786 1.21325 1.81848 1.46318 1.45991 1.24274 1.13305 1.51965 1.19755 0.93758 0.83738 0.88848 0.89589 1.20910 0.92484 1.10232 1.35235 0.90361 1.25090 0.96455 0.97400 0.95498 1.70419 1.17309 1.26828 1.32639 0.86151 0.81262 0.79919 0.78444 1.19385 1.20582 1.20580 1.23100 0.81089 0.80693 0.79085 1.93085 1.62403 1.73055 1.91229 1.93402 1.87517 1.57650 1.73217 1.92984 1.80787 1.88436 1.56918 1.21274 1.00379 0.91174 0.95639 0.90521 0.91912 0.92110 0.76969 0.75939 0.85617 0.85061 0.85122 0.76709 0.92171 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 10.70 59.85 0.64 1.40 16 2 N -0.75 -5.84 5.72 -72.07 -0.41 -6.25 16 3 C 0.70 8.60 8.30 -86.92 -0.72 7.87 16 4 O -0.56 -10.01 14.03 5.29 0.07 -9.93 16 5 N -0.69 -6.81 5.35 -14.26 -0.08 -6.88 16 6 C 0.15 1.95 6.27 -83.73 -0.53 1.43 16 7 C -0.13 -1.34 9.95 -39.31 -0.39 -1.73 16 8 C -0.11 -1.14 10.02 -39.67 -0.40 -1.54 16 9 C -0.10 -1.40 9.54 -39.16 -0.37 -1.77 16 10 C -0.10 -1.77 5.87 -104.99 -0.62 -2.39 16 11 C 0.55 11.91 7.31 -12.32 -0.09 11.82 16 12 O -0.53 -13.52 14.92 5.32 0.08 -13.44 16 13 N -0.71 -15.21 4.94 -55.87 -0.28 -15.49 16 14 C 0.24 6.28 2.21 -69.08 -0.15 6.13 16 15 H 0.09 2.46 7.58 -51.93 -0.39 2.07 16 16 C -0.55 -14.26 8.47 -34.44 -0.29 -14.56 16 17 H 0.08 1.90 7.74 -52.48 -0.41 1.49 16 18 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 19 N -0.84 -23.35 9.50 55.43 0.53 -22.82 16 20 Si 0.92 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.42 11.13 2.81 37.16 0.10 11.24 16 25 F -0.22 -5.85 15.68 2.25 0.04 -5.81 16 26 F -0.14 -3.90 12.91 2.25 0.03 -3.87 16 27 F -0.21 -5.35 16.94 2.25 0.04 -5.31 16 28 C -0.06 -1.08 8.20 -38.99 -0.32 -1.40 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.40 1.54 8.85 -40.82 -0.36 1.18 16 33 H 0.41 2.20 8.83 -40.82 -0.36 1.84 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.57 6.40 -52.48 -0.34 1.24 16 37 H 0.40 7.30 6.57 -40.82 -0.27 7.03 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.15 2.97 6.00 -52.49 -0.31 2.66 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -36.22 346.49 -6.70 -42.91 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.69 Total: 8.34 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: -3.23 Total: 18.11 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.24 Total: -51.44 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.15 Total: -23.37 kcal Atomic # 9 Polarization: -15.09 SS G_CDS: 0.10 Total: -14.99 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.22 -6.70 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.167 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds