Wall clock time and date at job start Wed Apr 1 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00315 * 2 1 4 4 O 1.21587 * 120.00015 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00048 * 179.97438 * 3 2 1 6 6 C 1.39977 * 119.99946 * 185.32017 * 5 3 2 7 7 C 1.38986 * 119.99639 * 213.31575 * 6 5 3 8 8 C 1.38209 * 120.22579 * 180.02562 * 7 6 5 9 9 C 1.38023 * 120.21818 * 359.69580 * 8 7 6 10 10 C 1.39573 * 119.99542 * 0.55684 * 9 8 7 11 11 C 1.47857 * 120.11198 * 179.74640 * 10 9 8 12 12 O 1.21558 * 120.00039 * 179.72526 * 11 10 9 13 13 N 1.34783 * 120.00230 * 359.97438 * 11 10 9 14 14 C 1.46497 * 120.00135 * 179.72304 * 13 11 10 15 15 H 1.09000 * 109.47097 * 35.00936 * 14 13 11 16 16 C 1.50701 * 109.46963 * 155.00178 * 14 13 11 17 17 H 1.08004 * 119.99840 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00239 * 179.97438 * 16 14 13 19 19 N 1.31510 * 119.99768 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00061 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46764 * 120.00504 * 20 18 16 23 23 H 1.48496 * 109.47214 * 240.00062 * 20 18 16 24 24 C 1.52999 * 109.47221 * 275.00570 * 14 13 11 25 25 F 1.39895 * 109.47218 * 60.00035 * 24 14 13 26 26 F 1.39900 * 109.46611 * 180.02562 * 24 14 13 27 27 F 1.39896 * 109.47025 * 299.99730 * 24 14 13 28 28 C 1.38582 * 120.00253 * 33.33541 * 6 5 3 29 29 H 1.09004 * 109.47787 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47272 * 300.00366 * 1 2 3 31 31 H 1.09001 * 109.47310 * 59.99577 * 1 2 3 32 32 H 0.97003 * 119.99798 * 179.97438 * 2 1 3 33 33 H 0.97002 * 120.00380 * 5.31668 * 5 3 2 34 34 H 1.08001 * 119.89208 * 0.02562 * 7 6 5 35 35 H 1.07995 * 119.89419 * 179.97438 * 8 7 6 36 36 H 1.08004 * 120.00433 * 180.27722 * 9 8 7 37 37 H 0.97003 * 119.99384 * 359.73451 * 13 11 10 38 38 H 0.97000 * 119.99990 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.10674 * 359.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.1865 2.3741 0.1129 7 6 5.4053 2.5336 -0.5358 8 6 6.1006 3.7232 -0.4276 9 6 5.5862 4.7629 0.3203 10 6 4.3656 4.6109 0.9799 11 6 3.8149 5.7211 1.7863 12 8 2.7493 5.5882 2.3558 13 7 4.4920 6.8822 1.8859 14 6 3.9434 7.9843 2.6799 15 1 3.4171 7.5817 3.5454 16 6 5.0659 8.8759 3.1447 17 1 6.0860 8.6449 2.8752 18 6 4.7908 9.9871 3.9132 19 7 3.5487 10.2686 4.2410 20 14 6.1822 11.0926 4.4887 21 1 7.4756 10.5614 3.9887 22 1 5.9742 12.4652 3.9614 23 1 6.2027 11.1305 5.9730 24 6 2.9695 8.7952 1.8226 25 9 1.9275 7.9675 1.3912 26 9 2.4462 9.8480 2.5809 27 9 3.6451 9.3120 0.7119 28 6 3.6644 3.4098 0.8713 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.9499 -0.8401 0.0004 33 1 3.9717 0.3306 -0.0769 34 1 5.8105 1.7253 -1.1264 35 1 7.0474 3.8411 -0.9335 36 1 6.1304 5.6926 0.3988 37 1 5.3425 6.9881 1.4316 38 1 3.3551 11.0502 4.7819 39 1 2.7175 3.2878 1.3760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:34 Heat of formation + Delta-G solvation = -191.720808 kcal Electronic energy + Delta-G solvation = -30573.609715 eV Core-core repulsion = 25680.237846 eV Total energy + Delta-G solvation = -4893.371869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.46931 -48.10804 -47.77268 -41.82520 -40.87092 -39.23479 -36.58885 -35.94090 -35.74128 -34.50574 -32.28610 -31.04610 -29.93076 -27.42688 -26.64352 -25.28860 -23.76825 -23.23114 -21.98002 -21.55884 -19.98636 -19.68855 -18.95384 -18.85192 -18.66569 -17.90534 -17.31831 -17.25340 -16.82326 -16.64905 -16.29027 -15.90025 -15.69364 -15.54258 -15.22289 -15.02342 -14.96263 -14.61245 -14.53868 -14.46363 -14.32994 -14.12031 -14.07869 -13.92771 -13.61572 -13.09146 -13.08167 -12.82696 -12.75236 -12.67271 -12.63221 -12.20578 -11.63963 -11.57662 -11.31134 -11.00431 -10.71700 -10.26422 -10.20202 -9.89870 -9.13895 -8.22406 -6.54473 -0.15566 0.33571 1.46542 1.47418 1.53312 1.61351 1.76454 2.02569 2.14866 2.38697 2.49041 2.89055 2.94942 3.20486 3.61174 3.75876 3.84447 3.95154 4.11011 4.17123 4.23913 4.38892 4.47890 4.51842 4.61331 4.81711 4.92201 4.95950 5.20495 5.30435 5.32380 5.35826 5.42150 5.44073 5.54425 5.62221 5.91107 5.97127 6.50311 6.64861 6.96099 7.13615 7.27116 7.44115 8.71099 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002964 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.013376 B = 9443.911439 C =10302.843967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.726 5.726 3 C 0.687 3.313 4 O -0.622 6.622 5 N -0.667 5.667 6 C 0.148 3.852 7 C -0.102 4.102 8 C -0.092 4.092 9 C -0.102 4.102 10 C -0.132 4.132 11 C 0.540 3.460 12 O -0.581 6.581 13 N -0.696 5.696 14 C 0.251 3.749 15 H 0.045 0.955 16 C -0.560 4.560 17 H 0.097 0.903 18 C 0.012 3.988 19 N -0.877 5.877 20 Si 0.989 3.011 21 H -0.251 1.251 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.412 3.588 25 F -0.223 7.223 26 F -0.149 7.149 27 F -0.201 7.201 28 C -0.092 4.092 29 H 0.122 0.878 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.420 0.580 33 H 0.431 0.569 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.145 0.855 37 H 0.414 0.586 38 H 0.269 0.731 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 -22.525 -11.304 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.387 3.613 4 O -0.502 6.502 5 N -0.317 5.317 6 C 0.052 3.948 7 C -0.123 4.123 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.136 4.136 11 C 0.329 3.671 12 O -0.462 6.462 13 N -0.347 5.347 14 C 0.144 3.856 15 H 0.062 0.938 16 C -0.597 4.597 17 H 0.115 0.885 18 C -0.193 4.193 19 N -0.511 5.511 20 Si 0.812 3.188 21 H -0.174 1.174 22 H -0.207 1.207 23 H -0.203 1.203 24 C 0.356 3.644 25 F -0.205 7.205 26 F -0.130 7.130 27 F -0.183 7.183 28 C -0.113 4.113 29 H 0.141 0.859 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.258 0.742 33 H 0.271 0.729 34 H 0.196 0.804 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.253 0.747 38 H 0.079 0.921 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.038 -21.609 -10.797 24.899 hybrid contribution 0.004 0.529 0.340 0.629 sum 6.042 -21.079 -10.457 24.294 Atomic orbital electron populations 1.21587 0.77151 1.04476 1.01095 1.44750 1.08295 1.06459 1.78766 1.16385 0.82131 0.84929 0.77890 1.91042 1.68673 1.32457 1.57996 1.42275 1.04220 1.08805 1.76448 1.17442 0.93865 0.86290 0.97162 1.21498 0.92986 0.99949 0.97844 1.21377 1.01132 0.91062 0.97394 1.21617 0.93083 1.01226 0.96192 1.19696 0.98072 0.93648 1.02203 1.19093 0.83958 0.83395 0.80605 1.90741 1.23853 1.82846 1.48745 1.45800 1.24847 1.12438 1.51627 1.19378 0.93549 0.84625 0.88056 0.93762 1.21267 0.93044 1.10185 1.35191 0.88480 1.26089 0.98943 0.98925 0.95351 1.70555 1.19669 1.27434 1.33410 0.85031 0.78563 0.77432 0.77806 1.17410 1.20665 1.20334 1.23344 0.81154 0.80550 0.79350 1.93071 1.62856 1.73239 1.91301 1.93377 1.87764 1.58249 1.73607 1.92980 1.80516 1.88330 1.56444 1.21050 0.99442 0.93085 0.97766 0.85937 0.94206 0.93449 0.74229 0.72929 0.80429 0.80282 0.83711 0.74726 0.92125 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 10.70 127.77 1.37 2.80 16 2 N -0.73 -10.50 5.72 -500.19 -2.86 -13.36 16 3 C 0.69 17.03 8.30 179.06 1.49 18.51 16 4 O -0.62 -23.94 14.03 -3.99 -0.06 -24.00 16 5 N -0.67 -12.02 5.35 -317.28 -1.70 -13.72 16 6 C 0.15 3.56 6.27 38.10 0.24 3.80 16 7 C -0.10 -1.57 9.95 22.44 0.22 -1.35 16 8 C -0.09 -1.48 10.02 22.21 0.22 -1.26 16 9 C -0.10 -2.54 9.54 22.54 0.21 -2.33 16 10 C -0.13 -4.78 5.87 -20.11 -0.12 -4.90 16 11 C 0.54 25.13 7.31 86.79 0.63 25.76 16 12 O -0.58 -32.78 14.92 -3.90 -0.06 -32.84 16 13 N -0.70 -31.10 4.94 -448.96 -2.22 -33.31 16 14 C 0.25 13.46 2.21 44.25 0.10 13.56 16 15 H 0.04 2.74 7.58 -2.39 -0.02 2.73 16 16 C -0.56 -29.18 8.47 25.60 0.22 -28.96 16 17 H 0.10 4.58 7.74 -2.91 -0.02 4.55 16 18 C 0.01 0.63 5.20 84.65 0.44 1.07 16 19 N -0.88 -50.20 9.50 21.45 0.20 -50.00 16 20 Si 0.99 41.10 29.54 68.60 2.03 43.13 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 24 C 0.41 22.97 2.81 71.98 0.20 23.17 16 25 F -0.22 -12.79 15.68 44.97 0.70 -12.08 16 26 F -0.15 -8.85 12.91 44.97 0.58 -8.27 16 27 F -0.20 -10.42 16.94 44.97 0.76 -9.66 16 28 C -0.09 -3.28 8.20 22.66 0.19 -3.10 16 29 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.04 0.75 8.14 -2.38 -0.02 0.74 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.42 2.08 8.85 -92.71 -0.82 1.26 16 33 H 0.43 3.06 8.83 -92.71 -0.82 2.24 16 34 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.15 3.10 6.40 -2.91 -0.02 3.08 16 37 H 0.41 15.17 6.57 -92.71 -0.61 14.56 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.10 4.64 6.00 -2.91 -0.02 4.62 16 Total: -1.00 -88.41 346.49 1.72 -86.69 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -1.08 Total: 20.64 kcal Atomic # 6 Polarization: 41.37 SS G_CDS: 5.41 Total: 46.78 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -6.57 Total: -110.39 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -0.11 Total: -56.84 kcal Atomic # 9 Polarization: -32.06 SS G_CDS: 2.05 Total: -30.01 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -88.41 1.72 -86.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.035 kcal (2) G-P(sol) polarization free energy of solvation -88.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds