Wall clock time and date at job start Wed Apr 1 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00018 * 2 1 4 4 C 1.52998 * 113.28199 * 75.71825 * 3 2 1 5 5 F 1.39902 * 109.47374 * 291.44091 * 4 3 2 6 6 F 1.39899 * 109.47070 * 51.44487 * 4 3 2 7 7 F 1.39903 * 109.47169 * 171.44003 * 4 3 2 8 8 C 1.53502 * 114.20524 * 302.65621 * 3 2 1 9 9 N 1.47070 * 87.98186 * 272.47572 * 8 3 2 10 10 C 1.34784 * 136.05723 * 152.84132 * 9 8 3 11 11 O 1.21579 * 119.99751 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00179 * 180.27670 * 10 9 8 13 13 C 1.39463 * 120.00107 * 174.92482 * 12 10 9 14 14 C 1.38640 * 119.64803 * 185.38737 * 13 12 10 15 15 C 1.40824 * 118.67516 * 179.97438 * 14 13 12 16 16 C 1.41535 * 121.00063 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00477 * 146.80113 * 16 15 14 18 18 C 1.40031 * 120.00144 * 326.79846 * 16 15 14 19 19 N 1.30750 * 119.99680 * 359.20765 * 18 16 15 20 20 Si 1.86798 * 120.00172 * 179.21041 * 18 16 15 21 21 H 1.48504 * 109.47172 * 60.00344 * 20 18 16 22 22 H 1.48507 * 109.46859 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47104 * 300.00002 * 20 18 16 24 24 C 1.41166 * 117.99971 * 359.97438 * 15 14 13 25 25 C 1.36590 * 119.13306 * 359.97438 * 24 15 14 26 26 N 1.32066 * 121.25492 * 359.74404 * 25 24 15 27 27 C 1.47060 * 87.88634 * 333.10104 * 9 8 3 28 28 H 1.09008 * 109.46954 * 55.82535 * 1 2 3 29 29 H 1.08997 * 109.46896 * 175.81725 * 1 2 3 30 30 H 1.08996 * 109.47087 * 295.82260 * 1 2 3 31 31 H 1.08998 * 113.46732 * 157.70173 * 8 3 2 32 32 H 1.08995 * 113.47064 * 27.25627 * 8 3 2 33 33 H 0.97003 * 119.99931 * 354.92909 * 12 10 9 34 34 H 1.07995 * 120.66543 * 359.95163 * 14 13 12 35 35 H 0.96998 * 119.99662 * 179.97438 * 19 18 16 36 36 H 1.08004 * 120.43241 * 179.97438 * 24 15 14 37 37 H 1.07995 * 119.37089 * 180.02562 * 25 24 15 38 38 H 1.09005 * 113.46501 * 141.67947 * 27 9 8 39 39 H 1.08997 * 113.46723 * 272.11160 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.9395 1.9989 1.3620 5 9 0.6079 2.3088 1.6590 6 9 2.4507 1.1465 2.3464 7 9 2.6952 3.1757 1.3259 8 6 1.5761 2.1877 -1.1787 9 7 2.6837 1.6079 -1.9532 10 6 2.9426 1.3816 -3.2565 11 8 2.1266 1.6948 -4.1016 12 7 4.1038 0.8036 -3.6224 13 6 4.3274 0.4729 -4.9587 14 6 5.4745 -0.2217 -5.3106 15 6 5.6794 -0.5455 -6.6657 16 6 6.8333 -1.2528 -7.0798 17 1 6.7759 -1.9409 -7.9101 18 6 8.0494 -1.0605 -6.4127 19 7 8.1225 -0.2159 -5.4173 20 14 9.5671 -2.0105 -6.9450 21 1 9.8802 -1.6904 -8.3610 22 1 10.7164 -1.6294 -6.0851 23 1 9.3113 -3.4672 -6.8117 24 6 4.6993 -0.1434 -7.5987 25 6 3.6003 0.5370 -7.1572 26 7 3.4376 0.8192 -5.8773 27 6 3.3818 1.3776 -0.6795 28 1 -0.3633 0.5773 -0.8503 29 1 -0.3633 -1.0249 -0.0750 30 1 -0.3633 0.4476 0.9250 31 1 1.6917 3.2546 -0.9880 32 1 0.5918 1.9334 -1.5718 33 1 4.7840 0.6176 -2.9564 34 1 6.1967 -0.5084 -4.5606 35 1 8.9648 -0.0829 -4.9550 36 1 4.8169 -0.3708 -8.6480 37 1 2.8479 0.8461 -7.8676 38 1 3.9298 0.4358 -0.6490 39 1 3.9833 2.2265 -0.3545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932163941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:14 Heat of formation + Delta-G solvation = -122.730065 kcal Electronic energy + Delta-G solvation = -30413.481870 eV Core-core repulsion = 25523.101664 eV Total energy + Delta-G solvation = -4890.380206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.51716 -48.06788 -47.95389 -41.08936 -39.27961 -37.83863 -36.44608 -34.31763 -33.73997 -30.75371 -30.39698 -28.64775 -27.51507 -26.18825 -26.14213 -25.92324 -22.26354 -21.91391 -21.05310 -19.62095 -19.01502 -18.85456 -18.62494 -17.99616 -17.67150 -16.19844 -16.05087 -15.76377 -15.47243 -15.26828 -14.99473 -14.83542 -14.79216 -14.50692 -14.42152 -14.21557 -14.17656 -14.14073 -14.05903 -13.67904 -13.36641 -12.89808 -12.67786 -12.59362 -12.51995 -12.37102 -12.14961 -11.43894 -11.21900 -11.18464 -10.92689 -10.40624 -10.29619 -10.18327 -9.83777 -9.69904 -9.40715 -8.83521 -7.92670 -7.79936 -7.08191 -6.72599 -4.64959 2.00065 2.46268 2.61784 2.69789 2.81103 3.01916 3.04593 3.13359 3.20878 3.30976 3.60273 3.73624 3.87476 4.00285 4.13858 4.41392 4.70461 4.82719 4.88117 4.92122 5.04008 5.13971 5.16326 5.31179 5.42996 5.62315 5.93900 6.36261 6.51661 6.55531 6.75652 6.93855 7.11863 7.23387 7.36978 7.44533 7.84923 8.02850 8.25452 8.42457 8.69415 8.75997 9.00377 9.64245 10.14432 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002644 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.927793 B =10589.136263 C =11529.051571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.019 3.981 4 C 0.450 3.550 5 F -0.179 7.179 6 F -0.170 7.170 7 F -0.172 7.172 8 C 0.116 3.884 9 N -0.659 5.659 10 C 0.732 3.268 11 O -0.520 6.520 12 N -0.659 5.659 13 C 0.350 3.650 14 C -0.231 4.231 15 C 0.145 3.855 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.804 5.804 20 Si 0.918 3.082 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.275 4.275 25 C 0.117 3.883 26 N -0.550 5.550 27 C 0.120 3.880 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.406 0.594 34 H 0.132 0.868 35 H 0.280 0.720 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 2.951 15.742 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.239 6.239 3 C -0.025 4.025 4 C 0.394 3.606 5 F -0.160 7.160 6 F -0.152 7.152 7 F -0.154 7.154 8 C -0.009 4.009 9 N -0.402 5.402 10 C 0.434 3.566 11 O -0.390 6.390 12 N -0.306 5.306 13 C 0.124 3.876 14 C -0.256 4.256 15 C 0.136 3.864 16 C -0.491 4.491 17 H 0.099 0.901 18 C -0.143 4.143 19 N -0.431 5.431 20 Si 0.742 3.258 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.299 4.299 25 C -0.037 4.037 26 N -0.269 5.269 27 C -0.005 4.005 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.240 0.760 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.591 3.537 15.299 18.400 hybrid contribution 1.698 -0.540 0.308 1.808 sum -7.893 2.998 15.607 17.745 Atomic orbital electron populations 1.23170 0.79354 1.04487 1.01462 1.88134 1.21304 1.20610 1.93816 1.24010 1.01393 0.88095 0.88995 1.20817 0.73925 0.77525 0.88306 1.93187 1.35023 1.93331 1.94503 1.93225 1.86877 1.70198 1.64871 1.93206 1.76229 1.49290 1.96659 1.23220 0.94134 0.97835 0.85680 1.48409 1.21926 1.66768 1.03057 1.15248 0.83114 0.79122 0.79075 1.91043 1.46738 1.54674 1.46563 1.42431 1.16989 1.62865 1.08363 1.17977 0.91990 0.95106 0.82493 1.21651 0.97481 1.08315 0.98175 1.17589 0.90974 0.87918 0.89873 1.19497 0.92600 1.22593 1.14446 0.90128 1.25909 1.00900 0.93921 0.93526 1.69712 1.27882 1.28207 1.17301 0.86215 0.79577 0.80437 0.79561 1.18971 1.20316 1.18886 1.21785 0.99705 1.09165 0.99241 1.21488 0.95655 0.95600 0.90959 1.67167 1.30964 1.27488 1.01276 1.22955 0.91805 1.04433 0.81257 0.92400 0.88018 0.92655 0.87943 0.88233 0.75953 0.84989 0.90864 0.87821 0.85878 0.87856 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.51 101.05 1.06 1.15 16 2 O -0.32 -3.54 10.57 -35.23 -0.37 -3.91 16 3 C 0.02 0.19 0.96 -90.24 -0.09 0.10 16 4 C 0.45 4.09 2.81 37.16 0.10 4.19 16 5 F -0.18 -1.59 15.42 2.25 0.03 -1.56 16 6 F -0.17 -1.70 17.23 2.25 0.04 -1.66 16 7 F -0.17 -1.52 15.69 2.25 0.04 -1.48 16 8 C 0.12 1.25 7.59 -8.50 -0.06 1.19 16 9 N -0.66 -9.35 3.69 -191.17 -0.71 -10.06 16 10 C 0.73 14.34 8.75 -86.92 -0.76 13.58 16 11 O -0.52 -12.41 15.38 5.30 0.08 -12.32 16 12 N -0.66 -13.17 5.39 -15.86 -0.09 -13.25 16 13 C 0.35 8.50 7.42 -154.67 -1.15 7.35 16 14 C -0.23 -5.79 8.59 -38.46 -0.33 -6.12 16 15 C 0.15 3.77 5.56 -106.55 -0.59 3.18 16 16 C -0.46 -11.71 9.12 -37.65 -0.34 -12.05 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 18 C 0.07 1.79 5.40 -17.34 -0.09 1.69 16 19 N -0.80 -19.71 10.76 55.55 0.60 -19.11 16 20 Si 0.92 17.99 29.56 -169.99 -5.02 12.97 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.28 -6.69 9.85 -39.07 -0.38 -7.07 16 25 C 0.12 2.79 11.10 -18.05 -0.20 2.59 16 26 N -0.55 -14.09 7.85 -12.76 -0.10 -14.19 16 27 C 0.12 1.22 7.60 -8.65 -0.07 1.15 16 28 H 0.06 0.48 6.21 -51.92 -0.32 0.16 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.40 6.54 -51.93 -0.34 0.06 16 31 H 0.10 0.91 7.76 -51.93 -0.40 0.51 16 32 H 0.10 1.07 6.26 -51.93 -0.32 0.75 16 33 H 0.41 6.75 8.42 -40.82 -0.34 6.41 16 34 H 0.13 3.30 6.32 -52.49 -0.33 2.97 16 35 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 36 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 37 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 0.89 7.21 -51.93 -0.37 0.52 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -32.22 345.37 -6.88 -39.09 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.68 Total: 9.33 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -2.90 Total: 10.95 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.29 Total: -56.61 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.29 Total: -16.23 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.11 Total: -4.70 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.22 -6.88 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932163941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.635 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds