Wall clock time and date at job start Wed Apr 1 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00018 * 2 1 4 4 C 1.52998 * 113.28199 * 75.71825 * 3 2 1 5 5 F 1.39902 * 109.47374 * 291.44091 * 4 3 2 6 6 F 1.39899 * 109.47070 * 51.44487 * 4 3 2 7 7 F 1.39903 * 109.47169 * 171.44003 * 4 3 2 8 8 C 1.53502 * 114.20524 * 302.65621 * 3 2 1 9 9 N 1.47070 * 87.98186 * 272.47572 * 8 3 2 10 10 C 1.34784 * 136.05723 * 152.84132 * 9 8 3 11 11 O 1.21579 * 119.99751 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00179 * 180.27670 * 10 9 8 13 13 C 1.39463 * 120.00107 * 174.92482 * 12 10 9 14 14 C 1.38640 * 119.64803 * 185.38737 * 13 12 10 15 15 C 1.40824 * 118.67516 * 179.97438 * 14 13 12 16 16 C 1.41535 * 121.00063 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00477 * 146.80113 * 16 15 14 18 18 C 1.40031 * 120.00144 * 326.79846 * 16 15 14 19 19 N 1.30750 * 119.99680 * 359.20765 * 18 16 15 20 20 Si 1.86798 * 120.00172 * 179.21041 * 18 16 15 21 21 H 1.48504 * 109.47172 * 60.00344 * 20 18 16 22 22 H 1.48507 * 109.46859 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47104 * 300.00002 * 20 18 16 24 24 C 1.41166 * 117.99971 * 359.97438 * 15 14 13 25 25 C 1.36590 * 119.13306 * 359.97438 * 24 15 14 26 26 N 1.32066 * 121.25492 * 359.74404 * 25 24 15 27 27 C 1.47060 * 87.88634 * 333.10104 * 9 8 3 28 28 H 1.09008 * 109.46954 * 55.82535 * 1 2 3 29 29 H 1.08997 * 109.46896 * 175.81725 * 1 2 3 30 30 H 1.08996 * 109.47087 * 295.82260 * 1 2 3 31 31 H 1.08998 * 113.46732 * 157.70173 * 8 3 2 32 32 H 1.08995 * 113.47064 * 27.25627 * 8 3 2 33 33 H 0.97003 * 119.99931 * 354.92909 * 12 10 9 34 34 H 1.07995 * 120.66543 * 359.95163 * 14 13 12 35 35 H 0.96998 * 119.99662 * 179.97438 * 19 18 16 36 36 H 1.08004 * 120.43241 * 179.97438 * 24 15 14 37 37 H 1.07995 * 119.37089 * 180.02562 * 25 24 15 38 38 H 1.09005 * 113.46501 * 141.67947 * 27 9 8 39 39 H 1.08997 * 113.46723 * 272.11160 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.9395 1.9989 1.3620 5 9 0.6079 2.3088 1.6590 6 9 2.4507 1.1465 2.3464 7 9 2.6952 3.1757 1.3259 8 6 1.5761 2.1877 -1.1787 9 7 2.6837 1.6079 -1.9532 10 6 2.9426 1.3816 -3.2565 11 8 2.1266 1.6948 -4.1016 12 7 4.1038 0.8036 -3.6224 13 6 4.3274 0.4729 -4.9587 14 6 5.4745 -0.2217 -5.3106 15 6 5.6794 -0.5455 -6.6657 16 6 6.8333 -1.2528 -7.0798 17 1 6.7759 -1.9409 -7.9101 18 6 8.0494 -1.0605 -6.4127 19 7 8.1225 -0.2159 -5.4173 20 14 9.5671 -2.0105 -6.9450 21 1 9.8802 -1.6904 -8.3610 22 1 10.7164 -1.6294 -6.0851 23 1 9.3113 -3.4672 -6.8117 24 6 4.6993 -0.1434 -7.5987 25 6 3.6003 0.5370 -7.1572 26 7 3.4376 0.8192 -5.8773 27 6 3.3818 1.3776 -0.6795 28 1 -0.3633 0.5773 -0.8503 29 1 -0.3633 -1.0249 -0.0750 30 1 -0.3633 0.4476 0.9250 31 1 1.6917 3.2546 -0.9880 32 1 0.5918 1.9334 -1.5718 33 1 4.7840 0.6176 -2.9564 34 1 6.1967 -0.5084 -4.5606 35 1 8.9648 -0.0829 -4.9550 36 1 4.8169 -0.3708 -8.6480 37 1 2.8479 0.8461 -7.8676 38 1 3.9298 0.4358 -0.6490 39 1 3.9833 2.2265 -0.3545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932163941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:13 Heat of formation + Delta-G solvation = -143.511178 kcal Electronic energy + Delta-G solvation = -30414.383006 eV Core-core repulsion = 25523.101664 eV Total energy + Delta-G solvation = -4891.281343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.25653 -48.78849 -48.70822 -42.16672 -40.83669 -39.40837 -37.45977 -36.08816 -35.50222 -32.47189 -31.77005 -30.18030 -28.35483 -27.89541 -27.14220 -26.94352 -23.86520 -23.51938 -22.35782 -20.96110 -19.96337 -19.64430 -19.49131 -19.37186 -19.09096 -17.72169 -17.28100 -16.92666 -16.75997 -16.54480 -16.05575 -15.95077 -15.79161 -15.75200 -15.56750 -15.49670 -15.17793 -15.00979 -14.90416 -14.77338 -14.70130 -14.54338 -14.29940 -14.10489 -13.46886 -13.34793 -13.18794 -12.90484 -12.84073 -12.68167 -12.15162 -12.00135 -11.89111 -11.56104 -11.45167 -11.18348 -11.05286 -10.02433 -9.84451 -9.66714 -8.88109 -8.53737 -6.57670 0.79122 0.97378 1.01685 1.43359 1.49553 1.54265 1.58059 1.88210 2.14478 2.23459 2.34209 2.48533 2.68835 2.86620 2.97343 3.30508 3.54387 3.71636 3.88667 4.09120 4.12951 4.19734 4.32147 4.37765 4.40221 4.51055 4.73424 4.76395 4.80979 4.91826 5.09172 5.26642 5.47230 5.61989 5.62100 5.84645 5.99208 6.22810 6.53988 6.74257 6.80512 6.87208 7.44076 7.82961 8.35265 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002644 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.927793 B =10589.136263 C =11529.051571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.342 6.342 3 C 0.029 3.971 4 C 0.461 3.539 5 F -0.176 7.176 6 F -0.174 7.174 7 F -0.168 7.168 8 C 0.111 3.889 9 N -0.662 5.662 10 C 0.730 3.270 11 O -0.570 6.570 12 N -0.654 5.654 13 C 0.349 3.651 14 C -0.246 4.246 15 C 0.117 3.883 16 C -0.488 4.488 17 H 0.083 0.917 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.991 3.009 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.287 4.287 25 C 0.111 3.889 26 N -0.575 5.575 27 C 0.117 3.883 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.419 0.581 34 H 0.128 0.872 35 H 0.289 0.711 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 2.968 17.050 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.259 6.259 3 C -0.016 4.016 4 C 0.405 3.595 5 F -0.157 7.157 6 F -0.155 7.155 7 F -0.149 7.149 8 C -0.012 4.012 9 N -0.402 5.402 10 C 0.433 3.567 11 O -0.444 6.444 12 N -0.302 5.302 13 C 0.121 3.879 14 C -0.271 4.271 15 C 0.108 3.892 16 C -0.520 4.520 17 H 0.102 0.898 18 C -0.180 4.180 19 N -0.453 5.453 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.311 4.311 25 C -0.042 4.042 26 N -0.294 5.294 27 C -0.005 4.005 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.256 0.744 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.167 0.833 38 H 0.129 0.871 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.915 3.568 16.697 19.261 hybrid contribution 1.419 -0.505 0.010 1.507 sum -7.496 3.063 16.708 18.566 Atomic orbital electron populations 1.23332 0.78150 1.05402 1.02051 1.88110 1.22679 1.21199 1.93945 1.23800 1.00846 0.87700 0.89212 1.20500 0.74068 0.77405 0.87528 1.93199 1.34814 1.93274 1.94420 1.93226 1.86951 1.70415 1.64900 1.93222 1.76129 1.48958 1.96598 1.23534 0.93236 0.99309 0.85115 1.48218 1.23828 1.65857 1.02347 1.15279 0.82269 0.78701 0.80424 1.90995 1.47966 1.56634 1.48850 1.42302 1.17908 1.62768 1.07257 1.18167 0.91442 0.94318 0.83936 1.21606 0.97967 1.09575 0.97996 1.18016 0.91863 0.88595 0.90720 1.19792 0.93459 1.23351 1.15382 0.89850 1.26777 1.03469 0.94473 0.93233 1.69763 1.29174 1.28594 1.17752 0.85112 0.75619 0.78955 0.79164 1.18717 1.19193 1.18347 1.21971 0.99709 1.09526 0.99870 1.21945 0.96108 0.94966 0.91158 1.67304 1.31665 1.28423 1.02053 1.23309 0.92370 1.06099 0.78762 0.92516 0.86998 0.91402 0.85538 0.88323 0.74382 0.85466 0.89987 0.86312 0.83251 0.87101 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.51 113.37 1.19 1.28 16 2 O -0.34 -7.01 10.57 -148.98 -1.57 -8.59 16 3 C 0.03 0.51 0.96 -10.55 -0.01 0.50 16 4 C 0.46 7.25 2.81 71.98 0.20 7.45 16 5 F -0.18 -2.70 15.42 44.97 0.69 -2.01 16 6 F -0.17 -3.07 17.23 44.97 0.77 -2.30 16 7 F -0.17 -2.48 15.69 44.97 0.71 -1.77 16 8 C 0.11 2.23 7.59 83.18 0.63 2.86 16 9 N -0.66 -18.10 3.69 -877.49 -3.24 -21.34 16 10 C 0.73 28.72 8.75 179.05 1.57 30.29 16 11 O -0.57 -27.65 15.38 -3.96 -0.06 -27.72 16 12 N -0.65 -26.36 5.39 -322.37 -1.74 -28.10 16 13 C 0.35 17.26 7.42 132.76 0.99 18.25 16 14 C -0.25 -12.64 8.59 23.00 0.20 -12.44 16 15 C 0.12 6.19 5.56 -21.11 -0.12 6.08 16 16 C -0.49 -25.16 9.12 23.52 0.21 -24.94 16 17 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 18 C 0.04 1.69 5.40 85.29 0.46 2.15 16 19 N -0.83 -40.42 10.76 21.84 0.23 -40.18 16 20 Si 0.99 36.10 29.56 68.60 2.03 38.13 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 24 C -0.29 -14.16 9.85 22.60 0.22 -13.94 16 25 C 0.11 5.38 11.10 84.27 0.94 6.32 16 26 N -0.57 -29.96 7.85 -194.27 -1.53 -31.48 16 27 C 0.12 2.15 7.60 83.09 0.63 2.78 16 28 H 0.06 0.88 6.21 -2.38 -0.01 0.87 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 0.86 6.54 -2.39 -0.02 0.85 16 31 H 0.13 1.95 7.76 -2.39 -0.02 1.93 16 32 H 0.10 2.02 6.26 -2.39 -0.01 2.01 16 33 H 0.42 13.93 8.42 -92.71 -0.78 13.15 16 34 H 0.13 6.53 6.32 -2.91 -0.02 6.51 16 35 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 36 H 0.12 5.31 8.06 -2.91 -0.02 5.28 16 37 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 38 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.14 1.82 7.21 -2.39 -0.02 1.81 16 Total: -1.00 -70.22 345.37 3.77 -66.45 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.36 Total: 32.27 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 7.11 Total: 26.63 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -6.27 Total: -121.10 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.64 Total: -36.30 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 2.17 Total: -6.08 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -70.22 3.77 -66.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932163941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.062 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds