Wall clock time and date at job start Wed Apr 1 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52319 * 2 1 4 4 C 1.53195 * 109.49789 * 120.08203 * 2 1 3 5 5 N 1.46930 * 108.77365 * 174.58524 * 4 2 1 6 6 C 1.36937 * 120.62532 * 126.37060 * 5 4 2 7 7 H 1.08004 * 120.00563 * 329.70534 * 6 5 4 8 8 C 1.38819 * 119.99869 * 149.70841 * 6 5 4 9 9 N 1.31622 * 119.99869 * 347.71360 * 8 6 5 10 10 Si 1.86799 * 120.00005 * 167.71429 * 8 6 5 11 11 H 1.48498 * 109.47348 * 60.00089 * 10 8 6 12 12 H 1.48501 * 109.46891 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47099 * 299.99812 * 10 8 6 14 14 C 1.46916 * 118.74000 * 306.39001 * 5 4 2 15 15 C 1.53198 * 108.77773 * 53.61156 * 14 5 4 16 16 C 1.53041 * 109.49774 * 239.91633 * 2 1 3 17 17 H 1.09007 * 109.44633 * 58.67287 * 16 2 1 18 18 N 1.46494 * 109.46305 * 298.70750 * 16 2 1 19 19 C 1.34779 * 120.00160 * 154.93050 * 18 16 2 20 20 O 1.21688 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.46680 * 120.00083 * 179.97438 * 19 18 16 22 22 S 1.76213 * 126.13084 * 4.81386 * 21 19 18 23 23 C 1.70948 * 90.31585 * 179.97438 * 22 21 19 24 24 N 1.29431 * 110.38833 * 359.77735 * 23 22 21 25 25 C 1.30938 * 117.36647 * 0.42185 * 24 23 22 26 26 C 1.50704 * 122.90557 * 179.82333 * 25 24 23 27 27 F 1.39902 * 109.47242 * 238.58541 * 26 25 24 28 28 F 1.39903 * 109.46793 * 118.58590 * 26 25 24 29 29 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46854 * 300.07934 * 1 2 3 31 31 H 1.08995 * 109.47321 * 60.08176 * 1 2 3 32 32 H 1.08994 * 109.58562 * 54.80111 * 4 2 1 33 33 H 1.09004 * 109.70363 * 294.44555 * 4 2 1 34 34 H 0.96993 * 120.00141 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.59064 * 293.82163 * 14 5 4 36 36 H 1.09003 * 109.58701 * 173.39787 * 14 5 4 37 37 H 1.08994 * 109.50014 * 185.41494 * 15 14 5 38 38 H 1.08999 * 109.52396 * 65.32843 * 15 14 5 39 39 H 0.96999 * 119.99832 * 334.92829 * 18 16 2 40 40 H 1.08003 * 124.80750 * 180.02562 * 23 22 21 41 41 H 1.08990 * 109.47121 * 358.58621 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8292 1.1695 6 6 4.2936 -0.3785 2.1941 7 1 3.9651 0.4496 2.8047 8 6 5.5157 -0.9861 2.4479 9 7 5.8116 -2.1337 1.8753 10 14 6.7402 -0.1749 3.6020 11 1 6.1283 -0.0244 4.9467 12 1 7.9583 -1.0182 3.7035 13 1 7.1077 1.1631 3.0728 14 6 4.1053 -1.4267 -0.0308 15 6 3.5709 -0.6950 -1.2661 16 6 2.0408 -0.7231 -1.2483 17 1 1.6582 -0.2243 -2.1388 18 7 1.5783 -2.1131 -1.2308 19 6 1.4489 -2.7948 -2.3862 20 8 1.7157 -2.2557 -3.4440 21 6 0.9863 -4.1867 -2.3686 22 16 0.4447 -5.0838 -0.9519 23 6 0.1573 -6.4614 -1.9224 24 7 0.4488 -6.2110 -3.1584 25 6 0.8983 -5.0140 -3.4402 26 6 1.2791 -4.5899 -4.8353 27 9 2.6192 -4.1885 -4.8513 28 9 0.4678 -3.5229 -5.2361 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8907 32 1 1.6053 -1.7216 1.2980 33 1 1.7637 -0.1601 2.1403 34 1 6.6654 -2.5584 2.0529 35 1 3.8376 -2.4819 -0.0868 36 1 5.1896 -1.3246 0.0137 37 1 3.9334 -1.1897 -2.1671 38 1 3.9159 0.3389 -1.2547 39 1 1.3653 -2.5427 -0.3877 40 1 -0.2185 -7.4056 -1.5567 41 1 1.1425 -5.4272 -5.5196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942429999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:24 Heat of formation + Delta-G solvation = -64.145543 kcal Electronic energy + Delta-G solvation = -29266.818238 eV Core-core repulsion = 24945.191624 eV Total energy + Delta-G solvation = -4321.626614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.81644 -46.81184 -40.46375 -39.57210 -37.59322 -34.32633 -32.68765 -31.60479 -31.10308 -30.07817 -27.92514 -25.90217 -25.26016 -24.89047 -22.69882 -21.65492 -21.11015 -19.83333 -19.35322 -18.63568 -17.53630 -17.15621 -16.76106 -16.45089 -16.30103 -15.54461 -15.31925 -14.90470 -14.69316 -14.32063 -14.08521 -13.80221 -13.71687 -13.59895 -13.34411 -13.14132 -12.94088 -12.84617 -12.59694 -12.35858 -12.15999 -11.52680 -11.42476 -11.14322 -11.06458 -10.85863 -10.73354 -10.40987 -10.33337 -10.25880 -10.10650 -9.87499 -9.85986 -9.79722 -9.49376 -9.47058 -8.70649 -8.50727 -6.69024 -5.82590 -3.30341 -0.11952 0.80030 1.19435 2.02248 3.09440 3.22670 3.27411 3.35221 3.41388 3.41990 4.05855 4.34369 4.44462 4.52804 4.82104 5.04248 5.09660 5.14920 5.27572 5.31999 5.35359 5.44699 5.56725 5.84435 5.92077 6.03098 6.10651 6.22495 6.26971 6.39813 6.58274 6.62311 6.70410 6.83822 6.90392 7.08493 7.33935 7.61426 7.65755 7.74920 8.25330 8.41857 9.16848 9.78467 10.35370 11.25029 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003534 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.253865 B = 7921.827248 C = 8122.330209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.085 0.915 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.064 0.936 8 C 0.006 3.994 9 N -0.903 5.903 10 Si 0.905 3.095 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.156 4.156 16 C 0.162 3.838 17 H 0.078 0.922 18 N -0.700 5.700 19 C 0.582 3.418 20 O -0.506 6.506 21 C -0.237 4.237 22 S 0.216 5.784 23 C 0.022 3.978 24 N -0.456 5.456 25 C 0.044 3.956 26 C 0.358 3.642 27 F -0.181 7.181 28 F -0.182 7.182 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.010 0.990 33 H 0.058 0.942 34 H 0.255 0.745 35 H 0.016 0.984 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.398 0.602 40 H 0.212 0.788 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 -7.129 -7.525 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.103 0.897 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.386 4.386 7 H 0.082 0.918 8 C -0.193 4.193 9 N -0.547 5.547 10 Si 0.734 3.266 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.049 3.951 15 C -0.196 4.196 16 C 0.058 3.942 17 H 0.096 0.904 18 N -0.352 5.352 19 C 0.365 3.635 20 O -0.383 6.383 21 C -0.362 4.362 22 S 0.472 5.528 23 C -0.273 4.273 24 N -0.169 5.169 25 C -0.096 4.096 26 C 0.301 3.699 27 F -0.162 7.162 28 F -0.163 7.163 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.234 0.766 40 H 0.229 0.771 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.651 -7.045 -7.500 17.095 hybrid contribution 0.840 0.212 0.325 0.926 sum -12.811 -6.833 -7.175 16.195 Atomic orbital electron populations 1.21775 0.95722 1.01227 1.01294 1.21975 0.94597 1.00898 0.96596 0.89679 1.20916 0.86260 0.95941 0.94422 1.44029 0.99012 1.71569 1.16680 1.19123 1.00043 1.10349 1.09052 0.91795 1.25120 0.99952 0.95365 0.98834 1.69972 1.23116 1.15532 1.46106 0.86347 0.80741 0.78716 0.80771 1.20875 1.21625 1.20961 1.20742 0.99500 0.92763 0.82120 1.22596 0.93851 1.02159 1.00975 1.20995 0.95401 0.79499 0.98307 0.90421 1.46001 1.66720 1.14811 1.07651 1.16638 0.78670 0.83026 0.85148 1.90898 1.49482 1.67959 1.29947 1.25985 1.11657 1.01467 0.97141 1.84268 1.54234 1.04201 1.10090 1.28662 1.03114 1.04410 0.91144 1.65820 1.13685 1.18193 1.19167 1.21039 1.02219 0.89226 0.97147 1.19393 0.73608 0.86697 0.90209 1.93074 1.33907 1.92195 1.97021 1.93053 1.72703 1.59673 1.90907 0.93299 0.92567 0.93128 0.97195 0.92315 0.93518 0.96576 0.89336 0.92490 0.91534 0.76597 0.77107 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.05 37.16 0.34 -1.49 16 2 C -0.12 -1.92 2.67 -90.50 -0.24 -2.16 16 3 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 4 C 0.15 2.88 5.50 -3.71 -0.02 2.86 16 5 N -0.59 -13.95 2.99 -172.31 -0.51 -14.47 16 6 C -0.26 -6.74 9.59 -15.06 -0.14 -6.89 16 7 H 0.06 1.65 7.86 -52.48 -0.41 1.24 16 8 C 0.01 0.17 5.02 -17.43 -0.09 0.08 16 9 N -0.90 -25.55 11.07 55.49 0.61 -24.94 16 10 Si 0.90 21.24 29.57 -169.99 -5.03 16.21 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.17 4.07 5.01 -3.71 -0.02 4.05 16 15 C -0.16 -3.08 5.77 -26.61 -0.15 -3.23 16 16 C 0.16 2.76 2.21 -67.89 -0.15 2.61 16 17 H 0.08 1.34 7.57 -51.92 -0.39 0.94 16 18 N -0.70 -11.31 3.59 -55.07 -0.20 -11.51 16 19 C 0.58 9.82 7.68 -12.85 -0.10 9.73 16 20 O -0.51 -9.85 12.74 5.20 0.07 -9.78 16 21 C -0.24 -3.39 6.44 -37.10 -0.24 -3.63 16 22 S 0.22 2.21 22.37 -107.50 -2.40 -0.20 16 23 C 0.02 0.20 12.22 51.75 0.63 0.83 16 24 N -0.46 -5.38 10.50 -11.53 -0.12 -5.50 16 25 C 0.04 0.60 6.25 -83.89 -0.52 0.08 16 26 C 0.36 4.89 5.07 36.01 0.18 5.07 16 27 F -0.18 -2.97 15.81 2.25 0.04 -2.93 16 28 F -0.18 -2.82 15.73 2.25 0.04 -2.78 16 29 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.19 6.64 -51.93 -0.34 -0.15 16 33 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 34 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 36 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.40 6.10 5.93 -40.82 -0.24 5.85 16 40 H 0.21 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -31.90 350.66 -7.76 -39.67 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.01 Total: 3.04 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.53 Total: 7.90 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.22 Total: -56.41 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.07 Total: -5.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.40 Total: -0.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.90 -7.76 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942429999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.478 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds