Wall clock time and date at job start Wed Apr 1 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52319 * 2 1 4 4 C 1.53195 * 109.49789 * 120.08203 * 2 1 3 5 5 N 1.46930 * 108.77365 * 174.58524 * 4 2 1 6 6 C 1.36937 * 120.62532 * 126.37060 * 5 4 2 7 7 H 1.08004 * 120.00563 * 329.70534 * 6 5 4 8 8 C 1.38819 * 119.99869 * 149.70841 * 6 5 4 9 9 N 1.31622 * 119.99869 * 347.71360 * 8 6 5 10 10 Si 1.86799 * 120.00005 * 167.71429 * 8 6 5 11 11 H 1.48498 * 109.47348 * 60.00089 * 10 8 6 12 12 H 1.48501 * 109.46891 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47099 * 299.99812 * 10 8 6 14 14 C 1.46916 * 118.74000 * 306.39001 * 5 4 2 15 15 C 1.53198 * 108.77773 * 53.61156 * 14 5 4 16 16 C 1.53041 * 109.49774 * 239.91633 * 2 1 3 17 17 H 1.09007 * 109.44633 * 58.67287 * 16 2 1 18 18 N 1.46494 * 109.46305 * 298.70750 * 16 2 1 19 19 C 1.34779 * 120.00160 * 154.93050 * 18 16 2 20 20 O 1.21688 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.46680 * 120.00083 * 179.97438 * 19 18 16 22 22 S 1.76213 * 126.13084 * 4.81386 * 21 19 18 23 23 C 1.70948 * 90.31585 * 179.97438 * 22 21 19 24 24 N 1.29431 * 110.38833 * 359.77735 * 23 22 21 25 25 C 1.30938 * 117.36647 * 0.42185 * 24 23 22 26 26 C 1.50704 * 122.90557 * 179.82333 * 25 24 23 27 27 F 1.39902 * 109.47242 * 238.58541 * 26 25 24 28 28 F 1.39903 * 109.46793 * 118.58590 * 26 25 24 29 29 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46854 * 300.07934 * 1 2 3 31 31 H 1.08995 * 109.47321 * 60.08176 * 1 2 3 32 32 H 1.08994 * 109.58562 * 54.80111 * 4 2 1 33 33 H 1.09004 * 109.70363 * 294.44555 * 4 2 1 34 34 H 0.96993 * 120.00141 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.59064 * 293.82163 * 14 5 4 36 36 H 1.09003 * 109.58701 * 173.39787 * 14 5 4 37 37 H 1.08994 * 109.50014 * 185.41494 * 15 14 5 38 38 H 1.08999 * 109.52396 * 65.32843 * 15 14 5 39 39 H 0.96999 * 119.99832 * 334.92829 * 18 16 2 40 40 H 1.08003 * 124.80750 * 180.02562 * 23 22 21 41 41 H 1.08990 * 109.47121 * 358.58621 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8292 1.1695 6 6 4.2936 -0.3785 2.1941 7 1 3.9651 0.4496 2.8047 8 6 5.5157 -0.9861 2.4479 9 7 5.8116 -2.1337 1.8753 10 14 6.7402 -0.1749 3.6020 11 1 6.1283 -0.0244 4.9467 12 1 7.9583 -1.0182 3.7035 13 1 7.1077 1.1631 3.0728 14 6 4.1053 -1.4267 -0.0308 15 6 3.5709 -0.6950 -1.2661 16 6 2.0408 -0.7231 -1.2483 17 1 1.6582 -0.2243 -2.1388 18 7 1.5783 -2.1131 -1.2308 19 6 1.4489 -2.7948 -2.3862 20 8 1.7157 -2.2557 -3.4440 21 6 0.9863 -4.1867 -2.3686 22 16 0.4447 -5.0838 -0.9519 23 6 0.1573 -6.4614 -1.9224 24 7 0.4488 -6.2110 -3.1584 25 6 0.8983 -5.0140 -3.4402 26 6 1.2791 -4.5899 -4.8353 27 9 2.6192 -4.1885 -4.8513 28 9 0.4678 -3.5229 -5.2361 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8907 32 1 1.6053 -1.7216 1.2980 33 1 1.7637 -0.1601 2.1403 34 1 6.6654 -2.5584 2.0529 35 1 3.8376 -2.4819 -0.0868 36 1 5.1896 -1.3246 0.0137 37 1 3.9334 -1.1897 -2.1671 38 1 3.9159 0.3389 -1.2547 39 1 1.3653 -2.5427 -0.3877 40 1 -0.2185 -7.4056 -1.5567 41 1 1.1425 -5.4272 -5.5196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942429999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:24 Heat of formation + Delta-G solvation = -84.661997 kcal Electronic energy + Delta-G solvation = -29267.707898 eV Core-core repulsion = 24945.191624 eV Total energy + Delta-G solvation = -4322.516274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.94097 -47.96218 -41.59119 -40.74553 -39.05298 -36.03345 -34.12092 -32.93814 -32.60124 -31.63646 -29.01608 -27.40053 -26.96220 -25.78305 -24.17173 -23.15296 -22.62865 -20.90416 -20.40631 -20.09483 -18.81876 -18.42954 -18.27434 -17.56228 -17.40655 -16.87903 -16.62484 -16.48358 -15.84913 -15.71770 -15.60332 -15.22154 -14.98392 -14.77749 -14.73479 -14.52374 -14.30719 -14.23942 -13.88555 -13.56780 -13.35074 -13.17060 -12.93425 -12.70197 -12.56333 -12.39114 -12.24050 -12.08982 -11.96752 -11.69742 -11.52663 -11.38662 -11.14049 -10.98134 -10.80446 -10.53585 -10.35413 -10.09346 -8.63149 -7.85604 -5.35285 -1.04837 -0.08315 0.35868 1.10961 1.47639 1.50286 1.56022 1.85638 2.02488 2.32367 2.51396 3.14630 3.30579 3.36178 3.60966 3.68165 3.74608 3.85841 3.97083 4.03974 4.10087 4.14851 4.38913 4.57081 4.58548 4.62769 4.74265 4.79022 4.95960 5.00163 5.06264 5.14617 5.28979 5.40037 5.44706 5.53240 5.64855 5.73153 6.19255 6.34734 6.40908 6.98341 7.15832 7.85737 8.37995 9.19665 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003534 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.253865 B = 7921.827248 C = 8122.330209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.069 0.931 8 C -0.046 4.046 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.273 1.273 12 H -0.298 1.298 13 H -0.281 1.281 14 C 0.189 3.811 15 C -0.144 4.144 16 C 0.168 3.832 17 H 0.081 0.919 18 N -0.697 5.697 19 C 0.581 3.419 20 O -0.541 6.541 21 C -0.284 4.284 22 S 0.252 5.748 23 C 0.048 3.952 24 N -0.472 5.472 25 C 0.046 3.954 26 C 0.345 3.655 27 F -0.202 7.202 28 F -0.196 7.196 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.248 0.752 35 H -0.002 1.002 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.402 0.598 40 H 0.261 0.739 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.040 -7.907 -6.629 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 H 0.100 0.900 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.392 4.392 7 H 0.087 0.913 8 C -0.242 4.242 9 N -0.581 5.581 10 Si 0.793 3.207 11 H -0.198 1.198 12 H -0.224 1.224 13 H -0.207 1.207 14 C 0.063 3.937 15 C -0.184 4.184 16 C 0.064 3.936 17 H 0.099 0.901 18 N -0.348 5.348 19 C 0.366 3.634 20 O -0.420 6.420 21 C -0.410 4.410 22 S 0.510 5.490 23 C -0.246 4.246 24 N -0.185 5.185 25 C -0.096 4.096 26 C 0.289 3.711 27 F -0.183 7.183 28 F -0.177 7.177 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.016 0.984 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.239 0.761 40 H 0.277 0.723 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.917 -7.813 -6.573 18.910 hybrid contribution 1.468 0.358 0.073 1.512 sum -14.449 -7.456 -6.500 17.511 Atomic orbital electron populations 1.21708 0.92662 1.02170 1.02646 1.21831 0.96967 0.99874 0.94101 0.89982 1.21096 0.83491 0.96900 0.96144 1.44213 1.00981 1.71537 1.16164 1.19475 1.00536 1.10152 1.09035 0.91321 1.25822 1.01727 0.95962 1.00684 1.70135 1.23112 1.16983 1.47825 0.85383 0.78353 0.77553 0.79376 1.19818 1.22394 1.20696 1.20388 0.97250 0.92271 0.83773 1.22414 0.96245 1.01227 0.98560 1.20859 0.93101 0.80499 0.99168 0.90082 1.45901 1.66623 1.14418 1.07873 1.16975 0.77836 0.84043 0.84568 1.90866 1.51003 1.69183 1.30965 1.25793 1.14674 1.00858 0.99681 1.84124 1.53101 1.03707 1.08058 1.29568 0.99789 1.05329 0.89931 1.65898 1.15003 1.17169 1.20456 1.21126 1.01679 0.89881 0.96908 1.19961 0.72346 0.87102 0.91658 1.93022 1.35609 1.92503 1.97194 1.93012 1.72972 1.60645 1.91100 0.92586 0.90914 0.92106 0.96195 0.91856 0.94267 0.98376 0.93330 0.93652 0.91668 0.76098 0.72306 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.05 71.98 0.65 -2.42 16 2 C -0.11 -3.26 2.67 -10.71 -0.03 -3.29 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.15 5.49 5.50 86.36 0.48 5.97 16 5 N -0.61 -28.79 2.99 -699.08 -2.09 -30.88 16 6 C -0.26 -13.82 9.59 84.04 0.81 -13.02 16 7 H 0.07 3.50 7.86 -2.91 -0.02 3.47 16 8 C -0.05 -2.53 5.02 84.86 0.43 -2.10 16 9 N -0.93 -54.38 11.07 21.65 0.24 -54.14 16 10 Si 0.96 44.08 29.57 68.60 2.03 46.11 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.19 9.13 5.01 86.37 0.43 9.56 16 15 C -0.14 -5.86 5.77 30.67 0.18 -5.68 16 16 C 0.17 5.68 2.21 45.02 0.10 5.78 16 17 H 0.08 2.75 7.57 -2.38 -0.02 2.73 16 18 N -0.70 -22.29 3.59 -446.37 -1.60 -23.89 16 19 C 0.58 19.73 7.68 86.45 0.66 20.39 16 20 O -0.54 -21.59 12.74 -4.31 -0.05 -21.64 16 21 C -0.28 -7.94 6.44 23.88 0.15 -7.79 16 22 S 0.25 4.57 22.37 -56.49 -1.26 3.30 16 23 C 0.05 0.68 12.22 130.60 1.60 2.27 16 24 N -0.47 -9.94 10.50 -190.40 -2.00 -11.94 16 25 C 0.05 1.21 6.25 42.10 0.26 1.47 16 26 C 0.35 9.35 5.07 71.24 0.36 9.71 16 27 F -0.20 -6.80 15.81 44.97 0.71 -6.09 16 28 F -0.20 -6.12 15.73 44.97 0.71 -5.42 16 29 H 0.06 1.21 7.54 -2.38 -0.02 1.19 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.02 0.71 6.64 -2.39 -0.02 0.70 16 33 H 0.06 2.27 7.93 -2.38 -0.02 2.25 16 34 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.00 -0.09 7.74 -2.39 -0.02 -0.11 16 36 H 0.05 2.73 6.07 -2.39 -0.01 2.71 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.40 11.99 5.93 -92.71 -0.55 11.44 16 40 H 0.26 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -71.83 350.66 3.29 -68.54 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.53 Total: 15.20 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.08 Total: 20.85 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -5.45 Total: -120.86 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 9 Polarization: -12.93 SS G_CDS: 1.42 Total: -11.51 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.26 Total: 3.30 kcal Total: -71.83 3.29 -68.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942429999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.124 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds