Wall clock time and date at job start Wed Apr 1 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70079 * 2 1 4 4 C 1.53194 * 109.58751 * 239.64779 * 2 1 3 5 5 C 1.53040 * 109.31525 * 185.57656 * 4 2 1 6 6 H 1.08994 * 109.45147 * 181.37777 * 5 4 2 7 7 N 1.46499 * 109.45937 * 301.34780 * 5 4 2 8 8 C 1.34772 * 119.99688 * 205.07051 * 7 5 4 9 9 O 1.21688 * 120.00583 * 359.97438 * 8 7 5 10 10 C 1.46683 * 119.99907 * 179.97438 * 8 7 5 11 11 S 1.76211 * 126.13224 * 356.97221 * 10 8 7 12 12 C 1.70956 * 90.31781 * 179.97438 * 11 10 8 13 13 N 1.29434 * 110.38845 * 359.74069 * 12 11 10 14 14 C 1.30947 * 117.36319 * 0.49292 * 13 12 11 15 15 C 1.50696 * 122.90458 * 179.75442 * 14 13 12 16 16 F 1.39899 * 109.47176 * 245.65770 * 15 14 13 17 17 F 1.39902 * 109.47013 * 125.65594 * 15 14 13 18 18 C 1.53041 * 109.53609 * 61.36150 * 5 4 2 19 19 C 1.53193 * 109.31432 * 298.63913 * 18 5 4 20 20 N 1.46915 * 109.58605 * 120.35748 * 2 1 3 21 21 C 1.36941 * 120.63436 * 353.37197 * 20 2 1 22 22 H 1.07995 * 119.99532 * 47.98357 * 21 20 2 23 23 C 1.38809 * 120.00354 * 227.99064 * 21 20 2 24 24 N 1.31620 * 119.99894 * 205.12906 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 25.12627 * 23 21 20 26 26 H 1.48499 * 109.47171 * 83.05595 * 25 23 21 27 27 H 1.48501 * 109.46887 * 203.05537 * 25 23 21 28 28 H 1.48499 * 109.47219 * 323.05357 * 25 23 21 29 29 H 1.08997 * 109.47297 * 299.64503 * 1 2 3 30 30 H 1.09006 * 109.46840 * 59.64562 * 1 2 3 31 31 H 1.08997 * 109.47391 * 179.64157 * 1 2 3 32 32 H 1.08999 * 109.49737 * 65.62206 * 4 2 1 33 33 H 1.09005 * 109.49585 * 305.53092 * 4 2 1 34 34 H 0.97004 * 120.00289 * 25.05938 * 7 5 4 35 35 H 1.07992 * 124.80196 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.47049 * 5.65754 * 15 14 13 37 37 H 1.09008 * 109.49790 * 58.58695 * 18 5 4 38 38 H 1.08997 * 109.50076 * 178.65296 * 18 5 4 39 39 H 1.09004 * 109.58729 * 174.42194 * 19 18 5 40 40 H 1.08994 * 109.58495 * 294.70159 * 19 18 5 41 41 H 0.96999 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 1 3.9376 -1.3448 -2.0670 7 7 4.1570 0.4898 -1.0749 8 6 5.4206 0.7007 -1.4936 9 8 6.0720 -0.2200 -1.9504 10 6 6.0107 2.0403 -1.3987 11 16 5.1947 3.4978 -0.8375 12 6 6.6200 4.4061 -1.0943 13 7 7.5650 3.6447 -1.5444 14 6 7.2828 2.3791 -1.7269 15 6 8.2860 1.3838 -2.2502 16 9 7.8741 0.9222 -3.5050 17 9 8.3787 0.3053 -1.3639 18 6 3.9569 -1.6656 0.0634 19 6 3.4650 -0.9469 1.3237 20 7 2.0225 -0.6995 1.1944 21 6 1.1537 -1.1127 2.1689 22 1 0.2565 -1.6503 1.8999 23 6 1.4262 -0.8406 3.5025 24 7 0.9224 -1.6067 4.4468 25 14 2.5079 0.6130 3.9571 26 1 1.6896 1.8520 3.9764 27 1 3.0989 0.3890 5.3009 28 1 3.5951 0.7533 2.9553 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8869 31 1 -0.3634 -1.0276 -0.0064 32 1 1.7660 -0.1667 -2.1368 33 1 1.6029 -1.7253 -1.2914 34 1 3.6379 1.2239 -0.7106 35 1 6.7193 5.4644 -0.9034 36 1 9.2603 1.8638 -2.3415 37 1 3.4983 -2.6528 0.0052 38 1 5.0412 -1.7700 0.1033 39 1 3.6518 -1.5718 2.1971 40 1 3.9921 0.0008 1.4330 41 1 1.1131 -1.4167 5.3787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947537076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:46 Heat of formation + Delta-G solvation = -59.851225 kcal Electronic energy + Delta-G solvation = -29310.133607 eV Core-core repulsion = 24988.693209 eV Total energy + Delta-G solvation = -4321.440399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.92255 -46.91624 -40.57925 -39.65348 -37.80964 -34.49882 -32.41715 -31.98635 -31.37844 -30.33249 -27.98993 -26.57121 -25.02790 -24.87883 -22.77210 -22.23482 -20.70141 -19.95714 -19.53614 -18.91769 -17.62862 -17.26575 -16.69732 -16.54967 -16.31560 -15.69425 -15.45775 -15.24970 -14.80307 -14.62078 -14.31403 -13.96888 -13.74652 -13.66224 -13.32309 -13.24373 -13.11251 -12.94755 -12.54452 -12.46949 -11.98567 -11.87867 -11.56382 -11.27891 -11.20554 -11.00514 -10.74101 -10.48686 -10.45497 -10.30997 -10.04418 -10.00322 -9.98997 -9.77101 -9.61147 -9.46782 -8.91983 -8.45589 -6.63970 -6.08034 -3.57198 -0.24953 0.67174 1.06736 1.90188 2.95807 3.06702 3.14370 3.32832 3.43566 3.44798 3.96026 4.22574 4.41335 4.50654 4.67564 4.89214 4.92829 5.00385 5.18501 5.18882 5.24009 5.41168 5.46129 5.75909 5.89624 5.99425 6.10899 6.23403 6.30533 6.37306 6.38656 6.48459 6.65850 6.79765 6.83548 6.96470 6.97728 7.05544 7.44378 8.03948 8.09211 8.43297 8.95674 9.65311 10.15172 11.07007 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003980 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.256430 B = 7034.070527 C = 7498.571518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.164 3.836 3 H 0.018 0.982 4 C -0.139 4.139 5 C 0.155 3.845 6 H 0.082 0.918 7 N -0.707 5.707 8 C 0.583 3.417 9 O -0.503 6.503 10 C -0.240 4.240 11 S 0.211 5.789 12 C 0.026 3.974 13 N -0.455 5.455 14 C 0.046 3.954 15 C 0.357 3.643 16 F -0.184 7.184 17 F -0.178 7.178 18 C -0.148 4.148 19 C 0.143 3.857 20 N -0.596 5.596 21 C -0.271 4.271 22 H 0.075 0.925 23 C 0.049 3.951 24 N -0.892 5.892 25 Si 0.855 3.145 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.257 1.257 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.397 0.603 35 H 0.213 0.787 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 12.210 -13.379 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 H 0.035 0.965 4 C -0.179 4.179 5 C 0.052 3.948 6 H 0.100 0.900 7 N -0.359 5.359 8 C 0.366 3.634 9 O -0.379 6.379 10 C -0.366 4.366 11 S 0.467 5.533 12 C -0.269 4.269 13 N -0.168 5.168 14 C -0.094 4.094 15 C 0.301 3.699 16 F -0.165 7.165 17 F -0.159 7.159 18 C -0.188 4.188 19 C 0.017 3.983 20 N -0.321 5.321 21 C -0.400 4.400 22 H 0.092 0.908 23 C -0.153 4.153 24 N -0.532 5.532 25 Si 0.683 3.317 26 H -0.213 1.213 27 H -0.225 1.225 28 H -0.182 1.182 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.233 0.767 35 H 0.230 0.770 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.669 11.992 -13.225 20.302 hybrid contribution 0.873 0.777 0.475 1.261 sum 10.542 12.768 -12.750 20.898 Atomic orbital electron populations 1.21736 0.94903 1.02054 1.00311 1.20543 0.94019 0.92608 0.87003 0.96451 1.22373 0.93348 1.02917 0.99250 1.21002 0.93359 0.81291 0.99175 0.89967 1.46085 1.13185 1.13339 1.63277 1.16653 0.82331 0.85264 0.79201 1.90910 1.60330 1.42058 1.44621 1.25975 0.98972 1.00225 1.11408 1.84285 1.15574 0.97852 1.55574 1.28689 0.91795 1.05174 1.01288 1.65835 1.33143 1.02711 1.15090 1.21073 0.93498 0.92200 1.02612 1.19406 0.95618 0.81037 0.73881 1.93045 1.92433 1.89883 1.41173 1.93084 1.96852 1.57424 1.68572 1.22433 1.00340 0.99735 0.96327 1.21347 0.84958 0.96648 0.95314 1.44355 1.02136 1.65507 1.20104 1.18570 1.05640 1.31069 0.84690 0.90803 1.25754 0.96668 0.96853 0.96034 1.69928 1.46503 1.36369 1.00370 0.87273 0.81589 0.85360 0.77474 1.21350 1.22538 1.18178 0.91635 0.94344 0.92327 0.92224 0.89944 0.76684 0.77004 0.85660 0.90691 0.92266 0.91599 0.95797 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.14 37.16 0.30 -1.97 16 2 C 0.16 2.92 3.20 -67.60 -0.22 2.70 16 3 H 0.02 0.31 6.64 -51.93 -0.34 -0.04 16 4 C -0.14 -2.10 5.07 -26.61 -0.13 -2.24 16 5 C 0.16 2.45 2.78 -67.89 -0.19 2.26 16 6 H 0.08 1.30 7.57 -51.93 -0.39 0.91 16 7 N -0.71 -10.62 4.26 -55.08 -0.23 -10.86 16 8 C 0.58 9.20 7.67 -12.85 -0.10 9.11 16 9 O -0.50 -9.24 12.75 5.20 0.07 -9.17 16 10 C -0.24 -3.22 6.44 -37.09 -0.24 -3.45 16 11 S 0.21 2.00 22.36 -107.50 -2.40 -0.41 16 12 C 0.03 0.21 12.22 51.75 0.63 0.84 16 13 N -0.46 -5.01 10.50 -11.53 -0.12 -5.13 16 14 C 0.05 0.60 6.27 -83.89 -0.53 0.07 16 15 C 0.36 4.58 5.07 36.00 0.18 4.76 16 16 F -0.18 -2.68 16.23 2.25 0.04 -2.64 16 17 F -0.18 -2.76 15.27 2.25 0.03 -2.73 16 18 C -0.15 -2.66 5.77 -26.61 -0.15 -2.81 16 19 C 0.14 2.97 4.23 -3.71 -0.02 2.96 16 20 N -0.60 -12.95 2.33 -164.78 -0.38 -13.33 16 21 C -0.27 -7.03 8.27 -15.06 -0.12 -7.15 16 22 H 0.07 2.08 7.10 -52.49 -0.37 1.71 16 23 C 0.05 1.35 5.09 -17.43 -0.09 1.26 16 24 N -0.89 -26.23 13.97 55.49 0.78 -25.45 16 25 Si 0.86 20.76 27.33 -169.99 -4.65 16.11 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.26 -5.88 4.74 56.52 0.27 -5.61 16 29 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.06 7.46 -51.93 -0.39 0.67 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.40 5.57 6.06 -40.82 -0.25 5.33 16 35 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.52 7.22 -51.93 -0.37 1.14 16 40 H 0.02 0.51 6.01 -51.93 -0.31 0.20 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -32.15 345.13 -7.40 -39.55 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.06 Total: 2.53 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.67 Total: 6.33 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.03 Total: -54.78 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.07 Total: -5.37 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.65 Total: 16.11 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.40 Total: -0.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.15 -7.40 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947537076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.301 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds