Wall clock time and date at job start Wed Apr 1 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70079 * 2 1 4 4 C 1.53194 * 109.58751 * 239.64779 * 2 1 3 5 5 C 1.53040 * 109.31525 * 185.57656 * 4 2 1 6 6 H 1.08994 * 109.45147 * 181.37777 * 5 4 2 7 7 N 1.46499 * 109.45937 * 301.34780 * 5 4 2 8 8 C 1.34772 * 119.99688 * 205.07051 * 7 5 4 9 9 O 1.21688 * 120.00583 * 359.97438 * 8 7 5 10 10 C 1.46683 * 119.99907 * 179.97438 * 8 7 5 11 11 S 1.76211 * 126.13224 * 356.97221 * 10 8 7 12 12 C 1.70956 * 90.31781 * 179.97438 * 11 10 8 13 13 N 1.29434 * 110.38845 * 359.74069 * 12 11 10 14 14 C 1.30947 * 117.36319 * 0.49292 * 13 12 11 15 15 C 1.50696 * 122.90458 * 179.75442 * 14 13 12 16 16 F 1.39899 * 109.47176 * 245.65770 * 15 14 13 17 17 F 1.39902 * 109.47013 * 125.65594 * 15 14 13 18 18 C 1.53041 * 109.53609 * 61.36150 * 5 4 2 19 19 C 1.53193 * 109.31432 * 298.63913 * 18 5 4 20 20 N 1.46915 * 109.58605 * 120.35748 * 2 1 3 21 21 C 1.36941 * 120.63436 * 353.37197 * 20 2 1 22 22 H 1.07995 * 119.99532 * 47.98357 * 21 20 2 23 23 C 1.38809 * 120.00354 * 227.99064 * 21 20 2 24 24 N 1.31620 * 119.99894 * 205.12906 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 25.12627 * 23 21 20 26 26 H 1.48499 * 109.47171 * 83.05595 * 25 23 21 27 27 H 1.48501 * 109.46887 * 203.05537 * 25 23 21 28 28 H 1.48499 * 109.47219 * 323.05357 * 25 23 21 29 29 H 1.08997 * 109.47297 * 299.64503 * 1 2 3 30 30 H 1.09006 * 109.46840 * 59.64562 * 1 2 3 31 31 H 1.08997 * 109.47391 * 179.64157 * 1 2 3 32 32 H 1.08999 * 109.49737 * 65.62206 * 4 2 1 33 33 H 1.09005 * 109.49585 * 305.53092 * 4 2 1 34 34 H 0.97004 * 120.00289 * 25.05938 * 7 5 4 35 35 H 1.07992 * 124.80196 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.47049 * 5.65754 * 15 14 13 37 37 H 1.09008 * 109.49790 * 58.58695 * 18 5 4 38 38 H 1.08997 * 109.50076 * 178.65296 * 18 5 4 39 39 H 1.09004 * 109.58729 * 174.42194 * 19 18 5 40 40 H 1.08994 * 109.58495 * 294.70159 * 19 18 5 41 41 H 0.96999 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 1 3.9376 -1.3448 -2.0670 7 7 4.1570 0.4898 -1.0749 8 6 5.4206 0.7007 -1.4936 9 8 6.0720 -0.2200 -1.9504 10 6 6.0107 2.0403 -1.3987 11 16 5.1947 3.4978 -0.8375 12 6 6.6200 4.4061 -1.0943 13 7 7.5650 3.6447 -1.5444 14 6 7.2828 2.3791 -1.7269 15 6 8.2860 1.3838 -2.2502 16 9 7.8741 0.9222 -3.5050 17 9 8.3787 0.3053 -1.3639 18 6 3.9569 -1.6656 0.0634 19 6 3.4650 -0.9469 1.3237 20 7 2.0225 -0.6995 1.1944 21 6 1.1537 -1.1127 2.1689 22 1 0.2565 -1.6503 1.8999 23 6 1.4262 -0.8406 3.5025 24 7 0.9224 -1.6067 4.4468 25 14 2.5079 0.6130 3.9571 26 1 1.6896 1.8520 3.9764 27 1 3.0989 0.3890 5.3009 28 1 3.5951 0.7533 2.9553 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8869 31 1 -0.3634 -1.0276 -0.0064 32 1 1.7660 -0.1667 -2.1368 33 1 1.6029 -1.7253 -1.2914 34 1 3.6379 1.2239 -0.7106 35 1 6.7193 5.4644 -0.9034 36 1 9.2603 1.8638 -2.3415 37 1 3.4983 -2.6528 0.0052 38 1 5.0412 -1.7700 0.1033 39 1 3.6518 -1.5718 2.1971 40 1 3.9921 0.0008 1.4330 41 1 1.1131 -1.4167 5.3787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947537076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:45 Heat of formation + Delta-G solvation = -81.586655 kcal Electronic energy + Delta-G solvation = -29311.076126 eV Core-core repulsion = 24988.693209 eV Total energy + Delta-G solvation = -4322.382918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.95292 -47.97275 -41.59098 -40.74459 -39.20770 -35.99867 -34.16166 -33.30575 -32.67213 -31.73062 -29.01506 -28.01038 -26.63353 -25.80595 -24.18010 -23.58785 -22.20014 -20.91136 -20.64366 -20.24307 -18.67596 -18.31438 -18.28666 -17.56932 -17.41777 -17.11153 -16.65197 -16.55247 -16.21431 -15.88989 -15.50982 -15.27217 -15.04479 -14.79836 -14.75683 -14.55399 -14.39887 -14.31186 -13.91887 -13.66321 -13.40122 -13.28896 -13.17558 -12.75460 -12.57902 -12.47999 -12.17100 -12.09745 -11.90428 -11.60569 -11.52885 -11.41946 -11.11960 -11.00669 -10.83700 -10.53463 -10.38254 -10.16380 -8.47842 -8.19057 -5.64384 -1.07863 -0.11240 0.32609 1.08594 1.38390 1.42578 1.50805 1.84108 1.96080 2.30265 2.48332 3.03093 3.13875 3.33335 3.39227 3.61392 3.75652 3.89963 3.95719 3.97967 4.11583 4.13217 4.30973 4.50050 4.55819 4.56049 4.63413 4.88184 4.91992 4.99776 5.04956 5.08919 5.13204 5.22912 5.41100 5.52132 5.62700 5.99333 6.16970 6.31194 6.34149 6.94932 7.06933 7.65670 8.18042 8.99993 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003980 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.256430 B = 7034.070527 C = 7498.571518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.039 0.961 4 C -0.127 4.127 5 C 0.161 3.839 6 H 0.086 0.914 7 N -0.703 5.703 8 C 0.582 3.418 9 O -0.538 6.538 10 C -0.285 4.285 11 S 0.250 5.750 12 C 0.050 3.950 13 N -0.473 5.473 14 C 0.047 3.953 15 C 0.345 3.655 16 F -0.198 7.198 17 F -0.199 7.199 18 C -0.139 4.139 19 C 0.146 3.854 20 N -0.605 5.605 21 C -0.248 4.248 22 H 0.042 0.958 23 C -0.006 4.006 24 N -0.944 5.944 25 Si 0.912 3.088 26 H -0.282 1.282 27 H -0.311 1.311 28 H -0.235 1.235 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.260 0.740 36 H 0.163 0.837 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.617 15.568 -15.170 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.053 3.947 3 H 0.056 0.944 4 C -0.166 4.166 5 C 0.058 3.942 6 H 0.104 0.896 7 N -0.355 5.355 8 C 0.367 3.633 9 O -0.416 6.416 10 C -0.411 4.411 11 S 0.508 5.492 12 C -0.244 4.244 13 N -0.186 5.186 14 C -0.094 4.094 15 C 0.289 3.711 16 F -0.179 7.179 17 F -0.180 7.180 18 C -0.179 4.179 19 C 0.021 3.979 20 N -0.331 5.331 21 C -0.378 4.378 22 H 0.059 0.941 23 C -0.204 4.204 24 N -0.587 5.587 25 Si 0.739 3.261 26 H -0.209 1.209 27 H -0.239 1.239 28 H -0.159 1.159 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.276 0.724 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.487 15.394 -15.053 23.949 hybrid contribution 0.597 -0.219 0.966 1.156 sum 11.083 15.176 -14.087 23.486 Atomic orbital electron populations 1.21683 0.94470 1.01220 1.01110 1.20805 0.94486 0.93446 0.86004 0.94381 1.22261 0.92397 1.02879 0.99095 1.20861 0.93881 0.81629 0.97874 0.89571 1.45985 1.13247 1.12985 1.63327 1.16958 0.82057 0.86046 0.78252 1.90884 1.61057 1.43616 1.46090 1.25798 1.00071 1.00741 1.14468 1.84118 1.15212 0.95479 1.54411 1.29564 0.90424 1.06631 0.97817 1.65907 1.34001 1.02031 1.16652 1.21134 0.93269 0.92951 1.02081 1.19947 0.97598 0.80609 0.72940 1.93005 1.92752 1.90119 1.42067 1.93034 1.97017 1.58654 1.69267 1.22290 0.99839 0.99633 0.96147 1.21239 0.84595 0.96513 0.95602 1.44442 1.01897 1.66263 1.20500 1.18417 1.04680 1.29183 0.85546 0.94068 1.26323 0.98821 0.99090 0.96176 1.70052 1.49636 1.38420 1.00550 0.86348 0.80590 0.82220 0.76893 1.20889 1.23927 1.15947 0.94065 0.90217 0.94080 0.88754 0.90451 0.75965 0.72400 0.82031 0.91234 0.92721 0.94571 0.95373 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.14 71.98 0.59 -3.54 16 2 C 0.16 5.21 3.20 44.98 0.14 5.35 16 3 H 0.04 1.16 6.64 -2.39 -0.02 1.14 16 4 C -0.13 -3.48 5.07 30.67 0.16 -3.32 16 5 C 0.16 4.79 2.78 45.02 0.13 4.92 16 6 H 0.09 2.57 7.57 -2.39 -0.02 2.55 16 7 N -0.70 -19.54 4.26 -446.39 -1.90 -21.45 16 8 C 0.58 17.58 7.67 86.45 0.66 18.24 16 9 O -0.54 -19.56 12.75 -4.31 -0.05 -19.62 16 10 C -0.28 -7.03 6.44 23.88 0.15 -6.88 16 11 S 0.25 3.78 22.36 -56.49 -1.26 2.52 16 12 C 0.05 0.58 12.22 130.60 1.60 2.18 16 13 N -0.47 -8.83 10.50 -190.40 -2.00 -10.83 16 14 C 0.05 1.12 6.27 42.09 0.26 1.38 16 15 C 0.35 8.48 5.07 71.23 0.36 8.84 16 16 F -0.20 -5.68 16.23 44.97 0.73 -4.95 16 17 F -0.20 -6.14 15.27 44.97 0.69 -5.45 16 18 C -0.14 -4.90 5.77 30.67 0.18 -4.73 16 19 C 0.15 5.98 4.23 86.36 0.37 6.35 16 20 N -0.61 -25.88 2.33 -675.24 -1.58 -27.46 16 21 C -0.25 -13.10 8.27 84.03 0.70 -12.41 16 22 H 0.04 2.43 7.10 -2.91 -0.02 2.41 16 23 C -0.01 -0.36 5.09 84.86 0.43 0.08 16 24 N -0.94 -57.50 13.97 21.65 0.30 -57.20 16 25 Si 0.91 43.15 27.33 68.60 1.88 45.03 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 28 H -0.24 -10.15 4.74 99.48 0.47 -9.68 16 29 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.04 1.45 7.46 -2.39 -0.02 1.44 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.40 10.03 6.06 -92.71 -0.56 9.46 16 35 H 0.26 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.68 7.22 -2.38 -0.02 1.66 16 40 H 0.03 1.15 6.01 -2.39 -0.01 1.13 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.22 345.13 2.81 -70.41 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.29 Total: 12.54 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.72 Total: 16.46 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.17 Total: -116.94 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 9 Polarization: -11.82 SS G_CDS: 1.42 Total: -10.40 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.26 Total: 2.52 kcal Total: -73.22 2.81 -70.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947537076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.172 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds