Wall clock time and date at job start Wed Apr 1 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70313 * 2 1 4 4 C 1.52760 * 109.50975 * 239.87934 * 2 1 3 5 5 C 1.53042 * 109.38127 * 185.70388 * 4 2 1 6 6 H 1.09001 * 109.45313 * 301.22735 * 5 4 2 7 7 N 1.46503 * 109.45789 * 181.26067 * 5 4 2 8 8 C 1.34779 * 119.99925 * 154.93278 * 7 5 4 9 9 O 1.21684 * 119.99880 * 0.02562 * 8 7 5 10 10 C 1.46683 * 119.99843 * 180.02562 * 8 7 5 11 11 S 1.76204 * 126.13077 * 354.89487 * 10 8 7 12 12 C 1.70955 * 90.31415 * 180.02562 * 11 10 8 13 13 N 1.29430 * 110.38828 * 0.02562 * 12 11 10 14 14 C 1.30940 * 117.36403 * 359.70603 * 13 12 11 15 15 C 1.50695 * 122.90285 * 180.34973 * 14 13 12 16 16 F 1.39903 * 109.47505 * 122.26650 * 15 14 13 17 17 F 1.39907 * 109.47281 * 242.26338 * 15 14 13 18 18 C 1.53041 * 109.53525 * 61.24492 * 5 4 2 19 19 C 1.53193 * 109.31197 * 298.62863 * 18 5 4 20 20 N 1.46922 * 109.58696 * 120.35261 * 2 1 3 21 21 C 1.36941 * 120.63005 * 353.41782 * 20 2 1 22 22 H 1.08001 * 119.99868 * 30.53966 * 21 20 2 23 23 C 1.38806 * 119.99983 * 210.53325 * 21 20 2 24 24 N 1.31621 * 119.99943 * 199.47999 * 23 21 20 25 25 Si 1.86800 * 120.00158 * 19.48131 * 23 21 20 26 26 H 1.48508 * 109.46935 * 273.05079 * 25 23 21 27 27 H 1.48492 * 109.47110 * 33.04932 * 25 23 21 28 28 H 1.48496 * 109.47265 * 153.05310 * 25 23 21 29 29 H 1.09004 * 109.47105 * 299.64871 * 1 2 3 30 30 H 1.09001 * 109.46763 * 59.64371 * 1 2 3 31 31 H 1.08996 * 109.47297 * 179.64591 * 1 2 3 32 32 H 1.09007 * 109.56045 * 65.67496 * 4 2 1 33 33 H 1.08992 * 109.36228 * 305.62163 * 4 2 1 34 34 H 0.97002 * 120.00197 * 334.93765 * 7 5 4 35 35 H 1.08003 * 124.80715 * 180.02562 * 12 11 10 36 36 H 1.09005 * 109.47639 * 2.26033 * 15 14 13 37 37 H 1.09008 * 109.49531 * 178.67994 * 18 5 4 38 38 H 1.08998 * 109.50083 * 58.58261 * 18 5 4 39 39 H 1.08998 * 109.58703 * 294.85074 * 19 18 5 40 40 H 1.08998 * 109.58676 * 174.42416 * 19 18 5 41 41 H 0.97002 * 119.99969 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5639 -0.8462 -1.1726 6 1 4.0056 0.1477 -1.0994 7 7 4.0578 -1.5121 -2.3804 8 6 5.3217 -1.3003 -2.7976 9 8 6.0527 -0.5563 -2.1709 10 6 5.8161 -1.9667 -4.0072 11 16 4.9467 -3.1655 -4.9620 12 6 6.2715 -3.2849 -6.0358 13 7 7.2250 -2.4918 -5.6655 14 6 7.0230 -1.7672 -4.5938 15 6 8.0442 -0.7980 -4.0565 16 9 7.4849 0.4830 -3.9962 17 9 8.4359 -1.1966 -2.7739 18 6 3.9523 -1.6686 0.0582 19 6 3.4644 -0.9518 1.3212 20 7 2.0225 -0.6995 1.1945 21 6 1.1536 -1.1134 2.1686 22 1 0.1431 -1.3917 1.9081 23 6 1.5716 -1.1753 3.4908 24 7 0.9080 -1.9114 4.3570 25 14 3.0758 -0.2140 4.0409 26 1 4.2958 -1.0286 3.8091 27 1 3.1683 1.0479 3.2637 28 1 2.9594 0.1025 5.4870 29 1 -0.3633 0.5084 0.8932 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3634 -1.0276 -0.0064 32 1 1.7632 -0.1565 -2.1349 33 1 1.5963 -1.7169 -1.2936 34 1 3.4752 -2.1055 -2.8798 35 1 6.3078 -3.9307 -6.9008 36 1 8.9135 -0.7844 -4.7140 37 1 5.0364 -1.7761 0.0967 38 1 3.4905 -2.6541 -0.0021 39 1 3.9929 -0.0049 1.4310 40 1 3.6503 -1.5797 2.1925 41 1 1.1998 -1.9544 5.2810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947537086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:54 Heat of formation + Delta-G solvation = -83.564843 kcal Electronic energy + Delta-G solvation = -28666.578239 eV Core-core repulsion = 24344.109541 eV Total energy + Delta-G solvation = -4322.468698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.96590 -47.99051 -41.54051 -40.66088 -39.37476 -36.27109 -34.30826 -33.43690 -32.67681 -31.71103 -29.09865 -27.99969 -26.50129 -25.78360 -24.44042 -23.52854 -21.85731 -21.45142 -20.72353 -20.20686 -18.68204 -18.35694 -18.29515 -17.67492 -17.50879 -17.26349 -16.70486 -16.44458 -16.36344 -15.87229 -15.41115 -15.38478 -15.03789 -14.86995 -14.81375 -14.71687 -14.36817 -14.33397 -13.94424 -13.88935 -13.52249 -13.37084 -12.87567 -12.76193 -12.68540 -12.27289 -12.14214 -12.05261 -11.90697 -11.79874 -11.57677 -11.51538 -11.27012 -10.98218 -10.82483 -10.70458 -10.34280 -10.17251 -8.89104 -8.14649 -5.47665 -1.06698 -0.09333 0.34040 1.10157 1.28471 1.39156 1.46624 1.84426 1.86259 2.31078 2.42157 3.04908 3.13959 3.27792 3.34798 3.61422 3.72698 3.82678 3.89597 3.94484 4.12826 4.16239 4.20372 4.42390 4.54519 4.57669 4.58554 4.68681 4.81615 4.90658 4.97866 5.03279 5.04571 5.15423 5.33910 5.46698 5.56984 5.93195 6.19472 6.21526 6.32315 6.93966 6.96020 7.65031 8.07005 9.04746 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.003148 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.346998 B = 8892.851823 C = 9666.807010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.163 3.837 3 H 0.033 0.967 4 C -0.121 4.121 5 C 0.161 3.839 6 H 0.071 0.929 7 N -0.702 5.702 8 C 0.580 3.420 9 O -0.542 6.542 10 C -0.287 4.287 11 S 0.278 5.722 12 C 0.046 3.954 13 N -0.477 5.477 14 C 0.047 3.953 15 C 0.342 3.658 16 F -0.200 7.200 17 F -0.201 7.201 18 C -0.130 4.130 19 C 0.127 3.873 20 N -0.615 5.615 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.027 4.027 24 N -0.954 5.954 25 Si 0.928 3.072 26 H -0.280 1.280 27 H -0.272 1.272 28 H -0.311 1.311 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.260 0.740 36 H 0.162 0.838 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.020 0.980 40 H 0.052 0.948 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 -3.957 -28.283 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.051 0.949 4 C -0.161 4.161 5 C 0.057 3.943 6 H 0.089 0.911 7 N -0.353 5.353 8 C 0.365 3.635 9 O -0.421 6.421 10 C -0.413 4.413 11 S 0.536 5.464 12 C -0.249 4.249 13 N -0.190 5.190 14 C -0.095 4.095 15 C 0.286 3.714 16 F -0.181 7.181 17 F -0.182 7.182 18 C -0.170 4.170 19 C 0.001 3.999 20 N -0.340 5.340 21 C -0.363 4.363 22 H 0.091 0.909 23 C -0.222 4.222 24 N -0.601 5.601 25 Si 0.759 3.241 26 H -0.207 1.207 27 H -0.197 1.197 28 H -0.240 1.240 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.276 0.724 36 H 0.179 0.821 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.886 -3.971 -27.980 29.625 hybrid contribution 1.166 0.776 1.477 2.035 sum 10.052 -3.195 -26.503 28.525 Atomic orbital electron populations 1.21726 0.93799 1.01623 1.01411 1.20610 0.94825 0.93524 0.85270 0.94909 1.22158 0.92001 1.02742 0.99170 1.20787 0.95343 0.95639 0.82536 0.91105 1.45857 1.12280 1.48868 1.28307 1.17072 0.82456 0.81040 0.82971 1.90917 1.56576 1.37793 1.56786 1.25750 1.01458 1.09405 1.04712 1.83824 1.17514 1.29852 1.15202 1.29588 0.90950 0.99757 1.04562 1.65897 1.31836 1.08042 1.13198 1.21050 0.94497 1.00040 0.93918 1.19990 0.93730 0.75997 0.81712 1.93013 1.87789 1.40654 1.96655 1.93025 1.91286 1.90724 1.43167 1.22223 0.99780 0.99887 0.95091 1.21264 0.84787 0.96851 0.97010 1.44666 1.01927 1.66248 1.21139 1.18914 0.96048 1.35383 0.85982 0.90862 1.25824 1.00017 1.00028 0.96347 1.69917 1.43975 1.41811 1.04396 0.86220 0.81316 0.80856 0.75743 1.20684 1.19701 1.23981 0.94134 0.89886 0.93234 0.88402 0.90453 0.75279 0.72412 0.82138 0.92719 0.91264 0.96196 0.92966 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.95 71.98 0.57 -3.66 16 2 C 0.16 5.84 3.48 44.83 0.16 5.99 16 3 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.12 -3.30 4.81 30.53 0.15 -3.16 16 5 C 0.16 4.88 2.42 45.02 0.11 4.98 16 6 H 0.07 2.45 7.57 -2.39 -0.02 2.43 16 7 N -0.70 -17.01 5.07 -446.36 -2.26 -19.28 16 8 C 0.58 16.36 7.67 86.45 0.66 17.03 16 9 O -0.54 -19.99 12.75 -4.30 -0.05 -20.04 16 10 C -0.29 -6.16 6.44 23.88 0.15 -6.01 16 11 S 0.28 2.70 22.37 -56.49 -1.26 1.43 16 12 C 0.05 0.36 12.22 130.60 1.60 1.96 16 13 N -0.48 -7.70 10.50 -190.40 -2.00 -9.70 16 14 C 0.05 1.01 6.25 42.09 0.26 1.27 16 15 C 0.34 8.16 5.07 71.23 0.36 8.52 16 16 F -0.20 -5.81 15.74 44.97 0.71 -5.10 16 17 F -0.20 -6.07 15.80 44.97 0.71 -5.36 16 18 C -0.13 -4.68 5.65 30.67 0.17 -4.51 16 19 C 0.13 5.62 4.21 86.36 0.36 5.98 16 20 N -0.61 -28.08 2.72 -676.04 -1.84 -29.92 16 21 C -0.23 -12.70 8.98 84.03 0.76 -11.95 16 22 H 0.07 4.20 6.45 -2.91 -0.02 4.18 16 23 C -0.03 -1.59 5.22 84.86 0.44 -1.15 16 24 N -0.95 -59.56 13.97 21.65 0.30 -59.25 16 25 Si 0.93 48.00 24.41 68.60 1.67 49.68 16 26 H -0.28 -14.01 6.43 99.48 0.64 -13.37 16 27 H -0.27 -13.84 7.01 99.48 0.70 -13.15 16 28 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 29 H 0.04 1.53 7.63 -2.38 -0.02 1.51 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 32 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 7.09 7.80 -92.71 -0.72 6.37 16 35 H 0.26 -0.59 8.06 -2.91 -0.02 -0.62 16 36 H 0.16 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.02 0.91 7.25 -2.39 -0.02 0.89 16 40 H 0.05 2.57 4.73 -2.39 -0.01 2.56 16 41 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -78.40 346.50 2.02 -76.38 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.29 Total: 5.86 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.76 Total: 15.30 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.80 Total: -118.15 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 9 Polarization: -11.88 SS G_CDS: 1.42 Total: -10.47 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.67 Total: 49.68 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.26 Total: 1.43 kcal Total: -78.40 2.02 -76.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947537086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.181 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds