Wall clock time and date at job start Wed Apr 1 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46550 * 2 1 4 4 C 1.53038 * 109.46298 * 240.03169 * 2 1 3 5 5 C 1.53191 * 109.31601 * 178.61503 * 4 2 1 6 6 N 1.46928 * 108.77325 * 54.64101 * 5 4 2 7 7 C 1.36933 * 120.63153 * 126.41633 * 6 5 4 8 8 H 1.08003 * 119.99769 * 207.67111 * 7 6 5 9 9 C 1.38806 * 120.00117 * 27.66304 * 7 6 5 10 10 N 1.31617 * 120.00183 * 17.37048 * 9 7 6 11 11 Si 1.86801 * 120.00196 * 197.36947 * 9 7 6 12 12 H 1.48504 * 109.46821 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47459 * 120.00153 * 11 9 7 14 14 H 1.48502 * 109.47456 * 240.00427 * 11 9 7 15 15 C 1.46933 * 118.73709 * 306.38826 * 6 5 4 16 16 C 1.53049 * 109.45791 * 119.96759 * 2 1 3 17 17 H 1.08998 * 109.49553 * 61.40276 * 16 2 1 18 18 N 1.46501 * 109.49467 * 301.33600 * 16 2 1 19 19 C 1.34784 * 119.99651 * 155.00406 * 18 16 2 20 20 O 1.21694 * 119.99786 * 359.97438 * 19 18 16 21 21 C 1.46673 * 120.00163 * 179.97438 * 19 18 16 22 22 S 1.76217 * 126.12875 * 359.97236 * 21 19 18 23 23 C 1.70953 * 90.31705 * 180.02562 * 22 21 19 24 24 N 1.29435 * 110.38894 * 359.97438 * 23 22 21 25 25 C 1.30944 * 117.36083 * 0.02562 * 24 23 22 26 26 C 1.50704 * 122.90111 * 179.73570 * 25 24 23 27 27 F 1.39900 * 109.47360 * 120.01908 * 26 25 24 28 28 F 1.39902 * 109.46887 * 240.02312 * 26 25 24 29 29 H 1.09007 * 109.46777 * 300.03388 * 1 2 3 30 30 H 1.08999 * 109.46682 * 60.02666 * 1 2 3 31 31 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.50077 * 298.57083 * 4 2 1 33 33 H 1.09010 * 109.49374 * 58.66523 * 4 2 1 34 34 H 1.09001 * 109.58514 * 174.42714 * 5 4 2 35 35 H 1.09002 * 109.58761 * 294.70830 * 5 4 2 36 36 H 0.96998 * 120.00355 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.58425 * 293.82644 * 15 6 5 38 38 H 1.08993 * 109.58416 * 173.39835 * 15 6 5 39 39 H 0.96994 * 120.00373 * 334.99759 * 18 16 2 40 40 H 1.07996 * 124.81036 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.46987 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2490 0.0001 7 6 4.9764 -2.2735 0.0001 8 1 5.0095 -2.9659 0.8283 9 6 5.8547 -2.4223 -1.0645 10 7 6.0605 -1.4204 -1.8928 11 14 6.7446 -4.0444 -1.3215 12 1 6.3420 -5.0032 -0.2613 13 1 6.3876 -4.5996 -2.6517 14 1 8.2111 -3.8204 -1.2560 15 6 3.5714 -0.6887 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6973 -1.7555 1.2386 18 7 1.5255 -0.0487 2.4460 19 6 1.3970 -0.7323 3.6005 20 8 1.7079 -1.9079 3.6493 21 6 0.8826 -0.0594 4.7979 22 16 0.3873 1.6281 4.9095 23 6 -0.0061 1.4134 6.5592 24 7 0.2291 0.1939 6.9239 25 6 0.7030 -0.6243 6.0181 26 6 1.0266 -2.0674 6.3077 27 9 0.2552 -2.8930 5.4827 28 9 2.3841 -2.2994 6.0614 29 1 -0.3633 0.5144 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6979 -1.7556 -1.2383 33 1 1.6573 -0.2207 -2.1398 34 1 3.9417 -1.2845 -2.0984 35 1 3.9144 0.3407 -1.3698 36 1 6.6746 -1.5242 -2.6365 37 1 3.9143 0.3408 1.3674 38 1 3.9416 -1.2846 2.0985 39 1 1.2775 0.8882 2.4069 40 1 -0.3965 2.1856 7.2054 41 1 0.8039 -2.2872 7.3518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967315637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:03 Heat of formation + Delta-G solvation = -64.317440 kcal Electronic energy + Delta-G solvation = -28884.987306 eV Core-core repulsion = 24563.353238 eV Total energy + Delta-G solvation = -4321.634068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.84732 -46.84298 -40.54328 -39.50825 -37.62347 -34.55580 -33.12140 -31.67701 -31.08873 -29.33133 -27.96129 -27.10009 -25.00501 -24.13286 -22.96180 -21.36325 -20.96738 -20.09047 -19.59404 -19.01899 -17.49080 -17.19119 -16.83503 -16.54156 -16.36555 -15.70112 -15.38120 -15.06706 -14.64209 -14.33486 -13.97164 -13.74888 -13.64780 -13.48533 -13.38873 -13.22025 -13.14931 -12.92476 -12.50488 -12.44095 -12.06786 -11.67851 -11.53748 -11.18400 -11.05534 -10.79922 -10.69566 -10.45313 -10.28421 -10.15887 -10.09582 -10.00287 -9.87568 -9.67507 -9.61672 -9.58793 -8.90155 -8.40530 -6.67553 -5.77353 -3.19208 -0.25523 0.64443 1.03106 1.90517 3.02828 3.08160 3.16233 3.40967 3.48976 3.53743 4.00763 4.24083 4.42111 4.52992 4.71938 4.99507 5.03017 5.07656 5.22025 5.24555 5.35818 5.45291 5.58535 5.85016 5.91591 6.00947 6.12166 6.18326 6.25498 6.47964 6.58841 6.61877 6.69713 6.80265 6.93829 6.97224 7.34370 7.51151 7.64648 7.85802 8.17397 8.46782 9.23368 9.85268 10.40428 11.31474 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003480 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.219150 B = 8044.096347 C = 9214.306666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.586 5.586 7 C -0.249 4.249 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.141 3.859 16 C 0.133 3.867 17 H 0.091 0.909 18 N -0.710 5.710 19 C 0.579 3.421 20 O -0.491 6.491 21 C -0.234 4.234 22 S 0.200 5.800 23 C 0.026 3.974 24 N -0.454 5.454 25 C 0.046 3.954 26 C 0.356 3.644 27 F -0.182 7.182 28 F -0.179 7.179 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.019 0.981 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.060 0.940 39 H 0.391 0.609 40 H 0.213 0.787 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.038 9.801 14.126 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.014 3.986 16 C 0.029 3.971 17 H 0.109 0.891 18 N -0.361 5.361 19 C 0.361 3.639 20 O -0.366 6.366 21 C -0.360 4.360 22 S 0.456 5.544 23 C -0.270 4.270 24 N -0.167 5.167 25 C -0.094 4.094 26 C 0.299 3.701 27 F -0.163 7.163 28 F -0.160 7.160 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.225 0.775 40 H 0.229 0.771 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.835 9.663 13.854 23.153 hybrid contribution 0.509 -0.893 0.014 1.028 sum -15.325 8.770 13.869 22.452 Atomic orbital electron populations 1.21865 0.95957 1.01711 1.00683 1.21322 0.94596 0.99701 0.95424 0.91417 1.22250 1.00697 0.99610 0.94709 1.20852 0.87274 0.97359 0.90403 1.44000 1.48047 1.39801 0.99026 1.19280 1.09633 1.02774 1.06210 0.91426 1.25005 0.97200 0.97528 0.99818 1.70045 1.37825 1.28997 1.18013 0.86223 0.79070 0.83753 0.77814 1.20096 1.21541 1.21741 1.21190 0.89789 0.96748 0.90922 1.21899 0.96961 0.97074 0.81206 0.89054 1.46007 1.65936 1.13761 1.10379 1.16661 0.79182 0.86534 0.81531 1.90973 1.47962 1.14305 1.83339 1.26022 1.11375 0.98267 1.00298 1.84033 1.54457 1.06198 1.09689 1.28664 1.03127 0.97049 0.98121 1.65830 1.14116 1.02371 1.34346 1.21101 1.01493 0.98380 0.88402 1.19418 0.74199 0.82210 0.94226 1.93064 1.74776 1.72674 1.75745 1.93090 1.32397 1.94635 1.95845 0.93617 0.92793 0.92766 0.92305 0.92611 0.89166 0.96310 0.93733 0.96476 0.92148 0.77549 0.77086 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.43 2.27 -90.57 -0.21 -1.63 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.42 5.36 -26.61 -0.14 -2.57 16 5 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 6 N -0.59 -14.84 2.99 -172.32 -0.52 -15.35 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 8 H 0.07 1.94 7.89 -52.48 -0.41 1.53 16 9 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 10 N -0.90 -26.26 11.19 55.49 0.62 -25.63 16 11 Si 0.90 22.21 29.59 -169.99 -5.03 17.18 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 C 0.14 3.07 6.09 -3.71 -0.02 3.05 16 16 C 0.13 2.36 2.07 -67.80 -0.14 2.22 16 17 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 18 N -0.71 -10.28 4.36 -54.99 -0.24 -10.52 16 19 C 0.58 9.24 7.71 -12.85 -0.10 9.14 16 20 O -0.49 -9.81 12.71 5.19 0.07 -9.75 16 21 C -0.23 -2.97 6.44 -37.10 -0.24 -3.21 16 22 S 0.20 1.53 22.35 -107.50 -2.40 -0.88 16 23 C 0.03 0.18 12.22 51.75 0.63 0.82 16 24 N -0.45 -4.74 10.50 -11.53 -0.12 -4.86 16 25 C 0.05 0.58 6.25 -83.89 -0.52 0.06 16 26 C 0.36 4.73 5.06 36.01 0.18 4.92 16 27 F -0.18 -2.83 15.77 2.25 0.04 -2.80 16 28 F -0.18 -2.91 15.76 2.25 0.04 -2.87 16 29 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.43 7.93 -51.93 -0.41 1.01 16 39 H 0.39 4.45 7.49 -40.82 -0.31 4.15 16 40 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -33.91 354.63 -7.84 -41.75 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.16 Total: 0.41 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.47 Total: 7.97 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.26 Total: -56.37 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.07 Total: -5.67 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.40 Total: -0.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.91 -7.84 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967315637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.563 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds