Wall clock time and date at job start Wed Apr 1 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99999 * 2 1 4 4 H 1.08005 * 120.00179 * 204.19883 * 3 2 1 5 5 C 1.38813 * 119.99678 * 24.20142 * 3 2 1 6 6 N 1.31613 * 120.00037 * 9.56647 * 5 3 2 7 7 Si 1.86797 * 119.99641 * 189.56950 * 5 3 2 8 8 H 1.48499 * 109.47415 * 59.99769 * 7 5 3 9 9 H 1.48500 * 109.47186 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47390 * 299.99931 * 7 5 3 11 11 C 1.46500 * 120.00167 * 180.02562 * 2 1 3 12 12 C 1.53034 * 109.46140 * 299.99989 * 11 2 1 13 13 C 1.53191 * 109.31571 * 181.37001 * 12 11 2 14 14 N 1.46931 * 108.77711 * 305.36484 * 13 12 11 15 15 C 1.34768 * 120.63175 * 233.58522 * 14 13 12 16 16 O 1.21690 * 119.99635 * 185.05721 * 15 14 13 17 17 C 1.46680 * 120.00373 * 5.05694 * 15 14 13 18 18 S 1.76217 * 126.13127 * 94.24804 * 17 15 14 19 19 C 1.70953 * 90.31368 * 179.97438 * 18 17 15 20 20 N 1.29432 * 110.39177 * 359.73698 * 19 18 17 21 21 C 1.30941 * 117.36114 * 0.49701 * 20 19 18 22 22 C 1.50706 * 122.90150 * 179.75315 * 21 20 19 23 23 F 1.39899 * 109.46873 * 22.20283 * 22 21 20 24 24 F 1.39898 * 109.46844 * 142.20551 * 22 21 20 25 25 C 1.46932 * 118.73422 * 53.85548 * 14 13 12 26 26 C 1.53045 * 109.44937 * 60.06074 * 11 2 1 27 27 H 1.09002 * 109.46975 * 275.22755 * 1 2 3 28 28 H 1.08991 * 109.47422 * 35.22760 * 1 2 3 29 29 H 1.09001 * 109.47345 * 155.22672 * 1 2 3 30 30 H 0.97003 * 119.99550 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46571 * 180.02562 * 11 2 1 32 32 H 1.09005 * 109.50099 * 61.42083 * 12 11 2 33 33 H 1.09004 * 109.52845 * 301.33825 * 12 11 2 34 34 H 1.09002 * 109.59125 * 185.57831 * 13 12 11 35 35 H 1.09002 * 109.70218 * 65.22118 * 13 12 11 36 36 H 1.07998 * 124.80225 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47036 * 262.20142 * 22 21 20 38 38 H 1.09006 * 109.58406 * 65.93477 * 25 14 13 39 39 H 1.09003 * 109.58381 * 186.35156 * 25 14 13 40 40 H 1.09000 * 109.49468 * 298.57633 * 26 11 2 41 41 H 1.09001 * 109.49637 * 58.67041 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1585 1.2271 -0.3834 5 6 1.5470 2.3352 0.4928 6 7 0.3980 2.2545 1.1296 7 14 2.3669 3.9963 0.2521 8 1 2.5212 4.2665 -1.1999 9 1 1.5279 5.0562 0.8670 10 1 3.7038 3.9868 0.8985 11 6 2.1975 -1.2687 -0.0006 12 6 1.8277 -2.0716 1.2487 13 6 2.6210 -3.3820 1.2621 14 7 2.3844 -4.0911 -0.0028 15 6 1.9580 -5.3695 -0.0040 16 8 1.8539 -5.9752 -1.0543 17 6 1.6195 -6.0310 1.2607 18 16 0.0141 -6.1402 1.9789 19 6 0.6539 -7.0186 3.2986 20 7 1.9296 -7.1833 3.1546 21 6 2.4861 -6.6688 2.0868 22 6 3.9609 -6.7811 1.7975 23 9 4.4913 -7.8715 2.4953 24 9 4.1538 -6.9675 0.4244 25 6 2.6273 -3.3817 -1.2664 26 6 1.8286 -2.0696 -1.2515 27 1 -0.3633 0.0936 1.0234 28 1 -0.3634 0.8394 -0.5927 29 1 -0.3634 -0.9331 -0.4306 30 1 -0.0228 3.0577 1.4743 31 1 3.2691 -1.0694 0.0000 32 1 0.7603 -2.2926 1.2364 33 1 2.0687 -1.4912 2.1393 34 1 2.2896 -4.0013 2.0957 35 1 3.6844 -3.1667 1.3670 36 1 0.0748 -7.3881 4.1319 37 1 4.4639 -5.8675 2.1142 38 1 3.6909 -3.1642 -1.3648 39 1 2.3001 -4.0009 -2.1018 40 1 0.7613 -2.2906 -1.2403 41 1 2.0708 -1.4875 -2.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985529418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:30 Heat of formation + Delta-G solvation = -52.133768 kcal Electronic energy + Delta-G solvation = -28878.518222 eV Core-core repulsion = 24557.412478 eV Total energy + Delta-G solvation = -4321.105745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.23178 -47.24031 -40.72770 -39.58232 -37.60147 -35.17395 -32.61850 -31.79028 -30.74103 -29.81216 -27.97437 -26.06045 -25.27770 -24.92432 -23.11291 -22.54805 -21.18012 -19.94055 -19.32601 -18.36786 -18.01475 -17.58578 -16.87572 -16.77032 -16.48683 -16.06163 -15.36351 -15.11141 -14.75282 -14.56559 -14.05056 -13.99739 -13.95815 -13.59184 -13.49104 -13.44889 -13.27663 -13.13263 -12.54553 -12.43660 -12.25771 -11.71337 -11.65362 -11.46289 -11.10104 -10.90609 -10.82751 -10.53434 -10.43924 -10.32414 -10.24714 -10.10289 -9.93121 -9.79259 -9.68229 -9.50308 -8.71606 -8.57986 -6.80010 -5.77036 -3.25717 -0.05302 0.56726 1.12165 2.02364 2.46666 2.87734 3.13442 3.34521 3.40542 3.40817 3.72603 4.01784 4.24078 4.42979 4.44599 4.56363 4.89432 4.93218 5.14238 5.24226 5.28189 5.31754 5.40215 5.48676 5.61468 5.78571 5.89317 6.04616 6.14630 6.25425 6.38910 6.46986 6.71937 6.87390 6.88468 7.03415 7.22545 7.34709 7.69069 7.75489 7.89919 8.35465 9.18975 9.81534 10.31112 11.27000 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.003012 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.570792 B = 9293.038161 C = 9631.752573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.104 3.896 14 N -0.591 5.591 15 C 0.589 3.411 16 O -0.516 6.516 17 C -0.234 4.234 18 S 0.239 5.761 19 C 0.014 3.986 20 N -0.445 5.445 21 C 0.022 3.978 22 C 0.347 3.653 23 F -0.184 7.184 24 F -0.183 7.183 25 C 0.117 3.883 26 C -0.147 4.147 27 H 0.030 0.970 28 H 0.040 0.960 29 H -0.003 1.003 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.213 0.787 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -17.275 3.940 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.019 4.019 14 N -0.324 5.324 15 C 0.372 3.628 16 O -0.392 6.392 17 C -0.360 4.360 18 S 0.495 5.505 19 C -0.282 4.282 20 N -0.157 5.157 21 C -0.117 4.117 22 C 0.291 3.709 23 F -0.165 7.165 24 F -0.164 7.164 25 C -0.005 4.005 26 C -0.187 4.187 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.148 0.852 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.534 -17.407 3.618 17.787 hybrid contribution 1.103 0.767 0.040 1.344 sum 1.637 -16.640 3.658 17.116 Atomic orbital electron populations 1.20752 0.82738 0.95217 0.99320 1.43917 1.01769 1.00091 1.85898 1.19172 0.98958 0.85815 1.34751 0.91519 1.25056 0.97622 0.98586 0.98112 1.70039 1.17977 1.27514 1.39733 0.86341 0.78611 0.83763 0.77822 1.21061 1.21649 1.20937 1.20287 0.96173 0.86086 0.90382 1.22522 0.99817 0.93940 1.02158 1.21952 1.00983 0.94612 0.84356 1.48101 1.64654 1.10698 1.08916 1.16704 0.78136 0.81700 0.86225 1.90856 1.53299 1.63806 1.31235 1.25575 0.98531 1.09458 1.02446 1.84320 1.05769 1.46957 1.13467 1.28712 0.93291 1.02585 1.03623 1.65773 1.10119 1.19670 1.20130 1.20920 0.97427 1.01227 0.92141 1.19704 0.87502 0.89333 0.74372 1.93033 1.87027 1.57810 1.78641 1.93106 1.95508 1.96251 1.31547 1.21871 1.00318 0.93489 0.84870 1.22583 1.00160 0.94518 1.01440 0.95218 0.94149 0.98488 0.93703 0.91728 0.92039 0.90255 0.91180 0.90754 0.77102 0.85198 0.90997 0.89263 0.91901 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 8.02 59.84 0.48 4.31 16 2 N -0.60 -13.83 2.81 -173.44 -0.49 -14.31 16 3 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 4 H 0.07 1.69 7.82 -52.48 -0.41 1.28 16 5 C 0.00 0.13 5.17 -17.43 -0.09 0.04 16 6 N -0.91 -25.43 10.60 55.49 0.59 -24.84 16 7 Si 0.90 21.09 29.56 -169.99 -5.03 16.07 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 C 0.18 3.25 2.55 -67.89 -0.17 3.08 16 12 C -0.14 -2.26 5.34 -26.61 -0.14 -2.41 16 13 C 0.10 1.28 6.35 -3.71 -0.02 1.26 16 14 N -0.59 -8.00 2.97 -174.04 -0.52 -8.52 16 15 C 0.59 8.60 5.87 -12.86 -0.08 8.52 16 16 O -0.52 -9.13 16.45 5.20 0.09 -9.05 16 17 C -0.23 -2.92 4.25 -37.10 -0.16 -3.08 16 18 S 0.24 2.23 23.21 -107.50 -2.50 -0.27 16 19 C 0.01 0.11 12.22 51.75 0.63 0.75 16 20 N -0.44 -5.02 10.22 -11.53 -0.12 -5.13 16 21 C 0.02 0.26 6.26 -83.89 -0.53 -0.26 16 22 C 0.35 3.95 5.60 36.01 0.20 4.15 16 23 F -0.18 -2.29 17.11 2.25 0.04 -2.25 16 24 F -0.18 -2.51 15.68 2.25 0.04 -2.47 16 25 C 0.12 1.59 6.45 -3.49 -0.02 1.57 16 26 C -0.15 -2.32 5.34 -26.39 -0.14 -2.46 16 27 H 0.03 0.75 7.32 -51.93 -0.38 0.37 16 28 H 0.04 1.03 7.33 -51.93 -0.38 0.65 16 29 H 0.00 -0.07 6.47 -51.93 -0.34 -0.40 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 31 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 32 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.07 0.78 6.13 -51.93 -0.32 0.46 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.26 7.03 -51.93 -0.37 0.90 16 40 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -32.18 354.43 -7.76 -39.93 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.02 Total: -3.14 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.18 Total: 8.64 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.53 Total: -52.81 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.07 Total: -4.72 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.50 Total: -0.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.18 -7.76 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985529418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.203 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds