Wall clock time and date at job start Wed Apr 1 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.70103 * 2 1 4 4 C 1.53623 * 109.66606 * 120.58956 * 2 1 3 5 5 H 1.09000 * 109.63218 * 54.55890 * 4 2 1 6 6 N 1.46497 * 109.45989 * 294.43583 * 4 2 1 7 7 C 1.34782 * 119.99920 * 155.26968 * 6 4 2 8 8 O 1.21684 * 119.99890 * 0.02562 * 7 6 4 9 9 C 1.46684 * 119.99710 * 180.02562 * 7 6 4 10 10 S 1.76204 * 126.13332 * 359.69080 * 9 7 6 11 11 C 1.70953 * 90.31406 * 179.97438 * 10 9 7 12 12 N 1.29422 * 110.39247 * 0.35165 * 11 10 9 13 13 C 1.30948 * 117.36476 * 359.72106 * 12 11 10 14 14 C 1.50700 * 122.90664 * 180.02562 * 13 12 11 15 15 F 1.39900 * 109.46603 * 119.99981 * 14 13 12 16 16 F 1.39900 * 109.46849 * 239.99810 * 14 13 12 17 17 C 1.53045 * 109.24256 * 174.54855 * 4 2 1 18 18 C 1.53033 * 109.53858 * 298.51554 * 17 4 2 19 19 C 1.53190 * 109.31353 * 61.36350 * 18 17 4 20 20 N 1.46920 * 109.58794 * 239.64636 * 2 1 3 21 21 C 1.36932 * 120.62964 * 6.62685 * 20 2 1 22 22 H 1.08004 * 120.00137 * 330.16290 * 21 20 2 23 23 C 1.38812 * 120.00574 * 150.16240 * 21 20 2 24 24 N 1.31625 * 119.99349 * 344.28580 * 23 21 20 25 25 Si 1.86793 * 120.00499 * 164.28348 * 23 21 20 26 26 H 1.48494 * 109.47507 * 266.30354 * 25 23 21 27 27 H 1.48502 * 109.47255 * 26.30784 * 25 23 21 28 28 H 1.48503 * 109.47206 * 146.30389 * 25 23 21 29 29 H 1.09000 * 109.47222 * 180.35573 * 1 2 3 30 30 H 1.09006 * 109.47083 * 300.35358 * 1 2 3 31 31 H 1.08993 * 109.47135 * 60.35392 * 1 2 3 32 32 H 0.96996 * 120.00250 * 335.27412 * 6 4 2 33 33 H 1.08008 * 124.80536 * 180.10606 * 11 10 9 34 34 H 1.08995 * 109.46830 * 0.02562 * 14 13 12 35 35 H 1.08996 * 109.45905 * 178.48724 * 17 4 2 36 36 H 1.09004 * 109.44363 * 58.52938 * 17 4 2 37 37 H 1.09002 * 109.50063 * 301.40978 * 18 17 4 38 38 H 1.09003 * 109.52696 * 181.33146 * 18 17 4 39 39 H 1.09004 * 109.58998 * 185.57465 * 19 18 17 40 40 H 1.09006 * 109.70632 * 65.22590 * 19 18 17 41 41 H 0.97006 * 119.99786 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0470 -0.7362 1.2453 5 1 1.6096 -1.7336 1.2890 6 7 1.6732 0.0147 2.4464 7 6 1.5566 -0.6208 3.6293 8 8 1.7622 -1.8181 3.6996 9 6 1.1817 0.1309 4.8318 10 16 0.8558 1.8605 4.9164 11 6 0.5433 1.7291 6.5920 12 7 0.6912 0.5045 6.9837 13 6 1.0307 -0.3798 6.0796 14 6 1.2354 -1.8386 6.3975 15 9 0.3413 -2.6093 5.6468 16 9 2.5477 -2.2052 6.0801 17 6 3.5712 -0.8497 1.1676 18 6 3.9615 -1.6626 -0.0688 19 6 3.4656 -0.9419 -1.3263 20 7 2.0225 -0.6995 -1.1944 21 6 1.1538 -1.1126 -2.1689 22 1 0.1396 -1.3795 -1.9105 23 6 1.5763 -1.1883 -3.4890 24 7 2.6851 -0.5841 -3.8606 25 14 0.5716 -2.1476 -4.7378 26 1 1.0941 -3.5343 -4.8335 27 1 -0.8494 -2.1826 -4.3081 28 1 0.6713 -1.4884 -6.0648 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 1.5095 0.9691 2.3904 33 1 0.2658 2.5524 7.2338 34 1 1.0573 -2.0074 7.4595 35 1 3.9443 -1.3478 2.0624 36 1 4.0063 0.1474 1.0989 37 1 3.5062 -2.6514 -0.0128 38 1 5.0461 -1.7634 -0.1111 39 1 3.6532 -1.5635 -2.2018 40 1 3.9875 0.0090 -1.4349 41 1 2.9807 -0.6373 -4.7830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993592703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:08 Heat of formation + Delta-G solvation = -63.156433 kcal Electronic energy + Delta-G solvation = -28873.603373 eV Core-core repulsion = 24552.019650 eV Total energy + Delta-G solvation = -4321.583723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.90888 -46.90479 -40.55925 -39.49343 -37.60997 -34.42923 -32.67948 -31.89387 -31.48095 -29.48517 -27.94983 -26.18066 -25.06256 -24.99510 -22.93047 -21.17515 -20.76531 -20.07193 -19.60502 -19.06585 -17.52734 -17.25061 -16.65192 -16.58134 -16.23982 -15.72574 -15.39113 -15.19317 -14.75623 -14.32935 -14.00680 -13.79186 -13.72333 -13.62988 -13.40181 -13.22757 -12.96408 -12.81888 -12.59080 -12.48794 -11.76449 -11.58256 -11.22506 -11.16058 -10.94354 -10.79402 -10.61263 -10.47099 -10.35090 -10.20834 -10.06008 -10.05793 -10.01439 -9.71292 -9.63734 -9.42153 -8.79216 -8.48231 -6.70812 -5.82280 -3.27284 -0.27231 0.63641 1.02620 1.88305 3.02035 3.04644 3.13359 3.36778 3.44408 3.45015 3.96160 4.21351 4.39418 4.46554 4.70188 4.94243 4.99358 5.19880 5.25546 5.34280 5.47305 5.54715 5.74066 5.92189 6.01066 6.16499 6.28026 6.35439 6.48385 6.53537 6.65449 6.72322 6.79690 6.93341 6.94316 7.01365 7.37064 7.49729 7.64202 7.79670 8.14259 8.41804 9.17105 9.79403 10.35822 11.26260 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.003030 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.601432 B = 9238.900196 C = 9583.460005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.091 0.909 6 N -0.708 5.708 7 C 0.580 3.420 8 O -0.498 6.498 9 C -0.236 4.236 10 S 0.207 5.793 11 C 0.025 3.975 12 N -0.455 5.455 13 C 0.045 3.955 14 C 0.357 3.643 15 F -0.181 7.181 16 F -0.181 7.181 17 C -0.117 4.117 18 C -0.139 4.139 19 C 0.169 3.831 20 N -0.581 5.581 21 C -0.254 4.254 22 H 0.071 0.929 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.278 1.278 28 H -0.291 1.291 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.213 0.787 34 H 0.126 0.874 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.020 0.980 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 6.969 20.994 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.109 0.891 6 N -0.358 5.358 7 C 0.363 3.637 8 O -0.374 6.374 9 C -0.362 4.362 10 S 0.463 5.537 11 C -0.270 4.270 12 N -0.167 5.167 13 C -0.095 4.095 14 C 0.300 3.700 15 F -0.162 7.162 16 F -0.162 7.162 17 C -0.156 4.156 18 C -0.179 4.179 19 C 0.044 3.956 20 N -0.304 5.304 21 C -0.383 4.383 22 H 0.089 0.911 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.143 0.857 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.640 6.863 20.658 21.928 hybrid contribution -0.366 -0.644 -0.469 0.877 sum -3.006 6.218 20.189 21.338 Atomic orbital electron populations 1.21823 0.95570 1.01812 1.00258 1.20647 0.93280 0.93493 0.86600 0.95399 1.22027 0.95418 0.97014 0.82930 0.89076 1.46042 1.69727 1.11938 1.08127 1.16679 0.78597 0.86840 0.81633 1.90933 1.48848 1.13049 1.84566 1.26033 1.12385 0.98026 0.99783 1.84118 1.58541 1.02951 1.08106 1.28676 1.02880 0.97649 0.97829 1.65826 1.14922 1.00676 1.35324 1.21085 1.02429 0.97919 0.88038 1.19410 0.73457 0.82066 0.95053 1.93071 1.67606 1.75806 1.79693 1.93066 1.36560 1.91884 1.94723 1.21770 0.95036 1.00191 0.98610 1.22176 0.99330 0.99766 0.96650 1.20841 0.83017 0.97222 0.94533 1.44041 1.03133 1.65068 1.18154 1.19183 0.95254 1.37915 0.85994 0.91138 1.25084 0.97908 0.99358 0.96964 1.70035 1.24224 1.43468 1.16791 0.86280 0.79824 0.79841 0.80840 1.21401 1.20348 1.21793 0.92532 0.94483 0.91550 0.77368 0.77060 0.85698 0.92972 0.92718 0.92389 0.92884 0.89401 0.96222 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.84 37.16 0.29 -2.20 16 2 C 0.17 3.30 3.05 -67.38 -0.21 3.09 16 3 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 4 C 0.13 2.35 2.01 -67.59 -0.14 2.21 16 5 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 6 N -0.71 -10.39 4.60 -54.78 -0.25 -10.64 16 7 C 0.58 9.05 7.70 -12.85 -0.10 8.95 16 8 O -0.50 -9.50 12.71 5.20 0.07 -9.43 16 9 C -0.24 -2.95 6.44 -37.09 -0.24 -3.19 16 10 S 0.21 1.59 22.35 -107.50 -2.40 -0.81 16 11 C 0.03 0.18 12.22 51.75 0.63 0.81 16 12 N -0.45 -4.64 10.50 -11.53 -0.12 -4.76 16 13 C 0.05 0.55 6.25 -83.89 -0.52 0.03 16 14 C 0.36 4.52 5.07 36.01 0.18 4.70 16 15 F -0.18 -2.75 15.77 2.25 0.04 -2.71 16 16 F -0.18 -2.73 15.76 2.25 0.04 -2.69 16 17 C -0.12 -2.10 5.46 -26.69 -0.15 -2.24 16 18 C -0.14 -2.73 6.08 -26.62 -0.16 -2.89 16 19 C 0.17 3.94 5.28 -3.71 -0.02 3.92 16 20 N -0.58 -13.90 2.98 -164.52 -0.49 -14.39 16 21 C -0.25 -6.66 8.57 -15.06 -0.13 -6.79 16 22 H 0.07 1.82 6.24 -52.48 -0.33 1.49 16 23 C 0.01 0.16 4.93 -17.43 -0.09 0.07 16 24 N -0.90 -25.43 11.23 55.49 0.62 -24.81 16 25 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H 0.06 1.09 7.44 -51.93 -0.39 0.70 16 30 H 0.04 0.55 7.82 -51.93 -0.41 0.14 16 31 H 0.07 1.28 7.62 -51.93 -0.40 0.89 16 32 H 0.39 4.74 7.79 -40.82 -0.32 4.42 16 33 H 0.21 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.09 2.30 6.13 -51.93 -0.32 1.98 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -32.26 351.69 -7.94 -40.20 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.06 Total: 1.95 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.64 Total: 6.47 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.24 Total: -54.60 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.07 Total: -5.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.40 Total: -0.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.26 -7.94 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.960 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds