Wall clock time and date at job start Wed Apr 1 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.70103 * 2 1 4 4 C 1.53623 * 109.66606 * 120.58956 * 2 1 3 5 5 H 1.09000 * 109.63218 * 54.55890 * 4 2 1 6 6 N 1.46497 * 109.45989 * 294.43583 * 4 2 1 7 7 C 1.34782 * 119.99920 * 155.26968 * 6 4 2 8 8 O 1.21684 * 119.99890 * 0.02562 * 7 6 4 9 9 C 1.46684 * 119.99710 * 180.02562 * 7 6 4 10 10 S 1.76204 * 126.13332 * 359.69080 * 9 7 6 11 11 C 1.70953 * 90.31406 * 179.97438 * 10 9 7 12 12 N 1.29422 * 110.39247 * 0.35165 * 11 10 9 13 13 C 1.30948 * 117.36476 * 359.72106 * 12 11 10 14 14 C 1.50700 * 122.90664 * 180.02562 * 13 12 11 15 15 F 1.39900 * 109.46603 * 119.99981 * 14 13 12 16 16 F 1.39900 * 109.46849 * 239.99810 * 14 13 12 17 17 C 1.53045 * 109.24256 * 174.54855 * 4 2 1 18 18 C 1.53033 * 109.53858 * 298.51554 * 17 4 2 19 19 C 1.53190 * 109.31353 * 61.36350 * 18 17 4 20 20 N 1.46920 * 109.58794 * 239.64636 * 2 1 3 21 21 C 1.36932 * 120.62964 * 6.62685 * 20 2 1 22 22 H 1.08004 * 120.00137 * 330.16290 * 21 20 2 23 23 C 1.38812 * 120.00574 * 150.16240 * 21 20 2 24 24 N 1.31625 * 119.99349 * 344.28580 * 23 21 20 25 25 Si 1.86793 * 120.00499 * 164.28348 * 23 21 20 26 26 H 1.48494 * 109.47507 * 266.30354 * 25 23 21 27 27 H 1.48502 * 109.47255 * 26.30784 * 25 23 21 28 28 H 1.48503 * 109.47206 * 146.30389 * 25 23 21 29 29 H 1.09000 * 109.47222 * 180.35573 * 1 2 3 30 30 H 1.09006 * 109.47083 * 300.35358 * 1 2 3 31 31 H 1.08993 * 109.47135 * 60.35392 * 1 2 3 32 32 H 0.96996 * 120.00250 * 335.27412 * 6 4 2 33 33 H 1.08008 * 124.80536 * 180.10606 * 11 10 9 34 34 H 1.08995 * 109.46830 * 0.02562 * 14 13 12 35 35 H 1.08996 * 109.45905 * 178.48724 * 17 4 2 36 36 H 1.09004 * 109.44363 * 58.52938 * 17 4 2 37 37 H 1.09002 * 109.50063 * 301.40978 * 18 17 4 38 38 H 1.09003 * 109.52696 * 181.33146 * 18 17 4 39 39 H 1.09004 * 109.58998 * 185.57465 * 19 18 17 40 40 H 1.09006 * 109.70632 * 65.22590 * 19 18 17 41 41 H 0.97006 * 119.99786 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0470 -0.7362 1.2453 5 1 1.6096 -1.7336 1.2890 6 7 1.6732 0.0147 2.4464 7 6 1.5566 -0.6208 3.6293 8 8 1.7622 -1.8181 3.6996 9 6 1.1817 0.1309 4.8318 10 16 0.8558 1.8605 4.9164 11 6 0.5433 1.7291 6.5920 12 7 0.6912 0.5045 6.9837 13 6 1.0307 -0.3798 6.0796 14 6 1.2354 -1.8386 6.3975 15 9 0.3413 -2.6093 5.6468 16 9 2.5477 -2.2052 6.0801 17 6 3.5712 -0.8497 1.1676 18 6 3.9615 -1.6626 -0.0688 19 6 3.4656 -0.9419 -1.3263 20 7 2.0225 -0.6995 -1.1944 21 6 1.1538 -1.1126 -2.1689 22 1 0.1396 -1.3795 -1.9105 23 6 1.5763 -1.1883 -3.4890 24 7 2.6851 -0.5841 -3.8606 25 14 0.5716 -2.1476 -4.7378 26 1 1.0941 -3.5343 -4.8335 27 1 -0.8494 -2.1826 -4.3081 28 1 0.6713 -1.4884 -6.0648 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 1.5095 0.9691 2.3904 33 1 0.2658 2.5524 7.2338 34 1 1.0573 -2.0074 7.4595 35 1 3.9443 -1.3478 2.0624 36 1 4.0063 0.1474 1.0989 37 1 3.5062 -2.6514 -0.0128 38 1 5.0461 -1.7634 -0.1111 39 1 3.6532 -1.5635 -2.2018 40 1 3.9875 0.0090 -1.4349 41 1 2.9807 -0.6373 -4.7830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993592703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:07 Heat of formation + Delta-G solvation = -84.898180 kcal Electronic energy + Delta-G solvation = -28874.546166 eV Core-core repulsion = 24552.019650 eV Total energy + Delta-G solvation = -4322.526516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.93901 -47.96426 -41.51595 -40.62881 -39.14100 -35.98328 -34.34333 -33.47917 -32.53110 -31.05543 -29.02067 -27.75754 -26.85646 -25.77266 -24.35197 -22.56948 -22.33736 -21.37176 -20.67516 -20.20343 -18.57165 -18.29699 -18.26875 -17.57090 -17.49856 -17.05854 -16.62199 -16.42489 -15.99513 -15.61083 -15.51797 -15.30984 -14.96462 -14.84046 -14.77873 -14.49667 -14.31918 -14.28988 -13.88867 -13.38604 -13.33825 -13.28000 -12.83664 -12.73037 -12.55082 -12.39372 -12.09851 -12.01095 -11.86421 -11.80911 -11.66364 -11.38989 -11.17158 -10.94675 -10.79685 -10.53193 -10.32361 -10.11873 -8.66225 -7.86097 -5.32455 -1.04232 -0.07115 0.36583 1.12552 1.46529 1.49553 1.56722 1.87628 1.90529 2.33491 2.52777 3.15958 3.29540 3.35547 3.57449 3.68945 3.78995 3.90000 3.96968 4.00333 4.15359 4.18203 4.34127 4.47096 4.59149 4.59809 4.74146 4.85628 4.88979 5.01170 5.11121 5.14984 5.23771 5.39842 5.44463 5.56143 5.70595 5.75573 6.21695 6.35459 6.41611 6.99867 7.16278 7.85584 8.37359 9.20766 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.003030 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.601432 B = 9238.900196 C = 9583.460005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.038 0.962 4 C 0.148 3.852 5 H 0.061 0.939 6 N -0.699 5.699 7 C 0.581 3.419 8 O -0.542 6.542 9 C -0.285 4.285 10 S 0.274 5.726 11 C 0.046 3.954 12 N -0.476 5.476 13 C 0.047 3.953 14 C 0.342 3.658 15 F -0.201 7.201 16 F -0.200 7.200 17 C -0.109 4.109 18 C -0.129 4.129 19 C 0.176 3.824 20 N -0.599 5.599 21 C -0.255 4.255 22 H 0.072 0.928 23 C -0.045 4.045 24 N -0.931 5.931 25 Si 0.959 3.041 26 H -0.291 1.291 27 H -0.268 1.268 28 H -0.294 1.294 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.007 0.993 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 9.252 23.375 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.056 0.944 4 C 0.042 3.958 5 H 0.080 0.920 6 N -0.350 5.350 7 C 0.366 3.634 8 O -0.421 6.421 9 C -0.411 4.411 10 S 0.531 5.469 11 C -0.248 4.248 12 N -0.189 5.189 13 C -0.095 4.095 14 C 0.286 3.714 15 F -0.182 7.182 16 F -0.181 7.181 17 C -0.148 4.148 18 C -0.169 4.169 19 C 0.051 3.949 20 N -0.323 5.323 21 C -0.385 4.385 22 H 0.089 0.911 23 C -0.241 4.241 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.218 1.218 27 H -0.193 1.193 28 H -0.221 1.221 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.244 0.756 33 H 0.276 0.724 34 H 0.179 0.821 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.715 9.200 23.066 25.109 hybrid contribution -0.076 -1.227 -1.076 1.634 sum -3.791 7.972 21.990 23.696 Atomic orbital electron populations 1.21737 0.94391 1.01120 1.01365 1.20803 0.94303 0.93524 0.85520 0.94437 1.21508 0.95138 0.95659 0.83507 0.92045 1.45756 1.69767 1.12423 1.07076 1.17036 0.77453 0.86541 0.82386 1.90906 1.50645 1.15134 1.85391 1.25738 1.15617 1.01301 0.98470 1.83876 1.56775 0.98251 1.07965 1.29586 0.99287 0.97629 0.98267 1.65900 1.16532 1.01528 1.34891 1.21065 1.02078 0.97904 0.88444 1.19985 0.72209 0.82664 0.96498 1.93019 1.68207 1.76519 1.80450 1.93015 1.37950 1.92163 1.94988 1.21685 0.95066 1.00548 0.97504 1.22015 1.00379 0.98735 0.95732 1.20632 0.83135 0.96206 0.94930 1.44264 1.03114 1.65895 1.19015 1.19445 0.95537 1.36934 0.86596 0.91065 1.25735 0.99079 1.00624 0.98633 1.70165 1.25769 1.45100 1.16693 0.85373 0.79022 0.78174 0.78607 1.21805 1.19304 1.22104 0.94136 0.90810 0.92881 0.75585 0.72359 0.82075 0.92790 0.91279 0.93794 0.90853 0.92780 0.97497 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 7.84 71.98 0.56 -3.99 16 2 C 0.17 6.41 3.05 45.12 0.14 6.55 16 3 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 4 C 0.15 5.25 2.01 45.22 0.09 5.34 16 5 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 6 N -0.70 -19.57 4.60 -445.43 -2.05 -21.61 16 7 C 0.58 17.75 7.70 86.45 0.67 18.42 16 8 O -0.54 -21.08 12.71 -4.30 -0.05 -21.13 16 9 C -0.29 -6.61 6.44 23.88 0.15 -6.45 16 10 S 0.27 3.13 22.35 -56.49 -1.26 1.87 16 11 C 0.05 0.42 12.22 130.60 1.60 2.02 16 12 N -0.48 -8.15 10.50 -190.39 -2.00 -10.15 16 13 C 0.05 1.07 6.25 42.09 0.26 1.33 16 14 C 0.34 8.52 5.07 71.24 0.36 8.88 16 15 F -0.20 -6.21 15.77 44.97 0.71 -5.50 16 16 F -0.20 -6.10 15.76 44.97 0.71 -5.39 16 17 C -0.11 -3.84 5.46 30.62 0.17 -3.67 16 18 C -0.13 -5.08 6.08 30.67 0.19 -4.90 16 19 C 0.18 8.42 5.28 86.36 0.46 8.87 16 20 N -0.60 -29.09 2.98 -674.42 -2.01 -31.10 16 21 C -0.26 -13.59 8.57 84.03 0.72 -12.87 16 22 H 0.07 3.72 6.24 -2.91 -0.02 3.70 16 23 C -0.04 -2.47 4.93 84.86 0.42 -2.05 16 24 N -0.93 -53.95 11.23 21.65 0.24 -53.71 16 25 Si 0.96 44.68 29.58 68.60 2.03 46.71 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 29 H 0.04 1.55 7.44 -2.39 -0.02 1.53 16 30 H 0.07 2.03 7.82 -2.38 -0.02 2.01 16 31 H 0.05 2.01 7.62 -2.39 -0.02 1.99 16 32 H 0.41 8.79 7.79 -92.71 -0.72 8.07 16 33 H 0.26 -0.34 8.06 -2.91 -0.02 -0.36 16 34 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.05 2.94 6.13 -2.38 -0.01 2.92 16 40 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -73.66 351.69 2.46 -71.20 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.36 Total: 11.35 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.78 Total: 17.47 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -5.81 Total: -116.58 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.05 Total: -21.13 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 1.42 Total: -10.89 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.26 Total: 1.87 kcal Total: -73.66 2.46 -71.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.694 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds