Wall clock time and date at job start Wed Apr 1 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00489 * 2 1 4 4 O 1.21685 * 120.00030 * 180.48434 * 3 2 1 5 5 C 1.46680 * 119.99666 * 0.48119 * 3 2 1 6 6 S 1.76209 * 126.13410 * 351.21403 * 5 3 2 7 7 C 1.70954 * 90.31816 * 180.26057 * 6 5 3 8 8 N 1.29430 * 110.39070 * 359.97438 * 7 6 5 9 9 C 1.30945 * 117.36031 * 359.97438 * 8 7 6 10 10 C 1.50701 * 122.90224 * 180.02562 * 9 8 7 11 11 F 1.39895 * 109.47439 * 119.96384 * 10 9 8 12 12 F 1.39901 * 109.47250 * 239.96702 * 10 9 8 13 13 C 1.46506 * 119.99664 * 179.97438 * 2 1 3 14 14 C 1.53038 * 109.45696 * 60.03100 * 13 2 1 15 15 C 1.53192 * 109.31265 * 178.60026 * 14 13 2 16 16 N 1.46932 * 108.76304 * 54.65018 * 15 14 13 17 17 C 1.36946 * 120.62627 * 126.41082 * 16 15 14 18 18 H 1.08001 * 119.99557 * 324.12016 * 17 16 15 19 19 C 1.38812 * 119.99805 * 144.12467 * 17 16 15 20 20 N 1.31619 * 120.00236 * 2.49687 * 19 17 16 21 21 Si 1.86794 * 119.99753 * 182.49604 * 19 17 16 22 22 H 1.48498 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47164 * 120.00040 * 21 19 17 24 24 H 1.48501 * 109.47087 * 240.00150 * 21 19 17 25 25 C 1.46924 * 118.74028 * 306.38682 * 16 15 14 26 26 C 1.53041 * 109.46064 * 299.97556 * 13 2 1 27 27 H 1.09004 * 109.46730 * 83.33637 * 1 2 3 28 28 H 1.08996 * 109.47206 * 203.34356 * 1 2 3 29 29 H 1.09003 * 109.46691 * 323.34188 * 1 2 3 30 30 H 1.08004 * 124.80303 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.46967 * 359.96184 * 10 9 8 32 32 H 1.08997 * 109.45647 * 180.02562 * 13 2 1 33 33 H 1.09001 * 109.50127 * 298.55895 * 14 13 2 34 34 H 1.08994 * 109.50092 * 58.66371 * 14 13 2 35 35 H 1.09004 * 109.59924 * 294.86762 * 15 14 13 36 36 H 1.09000 * 109.70812 * 174.50375 * 15 14 13 37 37 H 0.96997 * 119.99859 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.58703 * 293.81768 * 25 16 15 39 39 H 1.09006 * 109.69931 * 173.46357 * 25 16 15 40 40 H 1.08997 * 109.49308 * 301.33358 * 26 13 2 41 41 H 1.08998 * 109.49460 * 61.43263 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3558 1.1670 -0.0089 5 6 1.4056 2.4374 0.0107 6 16 -0.3334 2.6350 -0.1932 7 6 -0.1682 4.3298 -0.0422 8 7 1.0733 4.6475 0.1392 9 6 1.9453 3.6712 0.1750 10 6 3.4209 3.8987 0.3796 11 9 3.8393 3.2332 1.5368 12 9 4.1262 3.4050 -0.7231 13 6 2.1975 -1.2688 0.0006 14 6 1.8280 -2.0712 -1.2491 15 6 2.6218 -3.3814 -1.2630 16 7 2.3847 -4.0910 0.0016 17 6 1.9517 -5.3902 0.0020 18 1 1.2611 -5.7294 -0.7560 19 6 2.4002 -6.2710 0.9766 20 7 3.2030 -5.8456 1.9289 21 14 1.8646 -8.0600 0.9364 22 1 0.9679 -8.2823 -0.2263 23 1 3.0602 -8.9322 0.8139 24 1 1.1391 -8.3878 2.1900 25 6 2.6216 -3.3805 1.2656 26 6 1.8280 -2.0703 1.2509 27 1 -0.3633 0.1193 -1.0208 28 1 -0.3633 -0.9435 0.4072 29 1 -0.3633 0.8244 0.6136 30 1 -0.9844 5.0354 -0.0904 31 1 3.6127 4.9665 0.4851 32 1 3.2690 -1.0694 0.0009 33 1 0.7608 -2.2925 -1.2372 34 1 2.0697 -1.4903 -2.1391 35 1 3.6849 -3.1637 -1.3660 36 1 2.2933 -4.0014 -2.0971 37 1 3.5167 -6.4612 2.6097 38 1 3.6846 -3.1628 1.3688 39 1 2.2922 -3.9978 2.1015 40 1 2.0697 -1.4886 2.1404 41 1 0.7607 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005695721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:29 Heat of formation + Delta-G solvation = -49.247617 kcal Electronic energy + Delta-G solvation = -28852.987046 eV Core-core repulsion = 24532.006454 eV Total energy + Delta-G solvation = -4320.980592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.88698 -46.88212 -40.56353 -39.62709 -37.39657 -35.27285 -32.74890 -31.54076 -30.24865 -29.67909 -28.06723 -27.22150 -25.15741 -24.86850 -22.79187 -22.19362 -20.91433 -19.75521 -19.03845 -18.80814 -17.28020 -17.22677 -16.87049 -16.81328 -16.33701 -15.86618 -15.74202 -15.11978 -14.75747 -14.44529 -13.94019 -13.74025 -13.70323 -13.60806 -13.24576 -13.14743 -13.12943 -13.04007 -12.68309 -12.59954 -12.40092 -12.26550 -11.54961 -11.18718 -10.99882 -10.91169 -10.81540 -10.37948 -10.25524 -10.18941 -10.10323 -9.97018 -9.86567 -9.79700 -9.63683 -9.52067 -8.58029 -8.41232 -6.59414 -5.82329 -3.36070 -0.22095 0.69631 1.13161 1.95027 2.85324 2.97577 3.17905 3.34172 3.41899 3.43430 3.98775 4.14564 4.44205 4.44703 4.46743 4.77288 4.96925 5.03492 5.10515 5.25901 5.30272 5.36519 5.48042 5.48924 5.56863 5.80591 6.04013 6.12705 6.28298 6.45086 6.49305 6.60535 6.74931 6.80139 6.93396 7.03815 7.29964 7.38717 7.74369 7.76014 8.04036 8.48889 9.20786 9.79117 10.39514 11.24595 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.002867 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.727754 B = 9765.090297 C =10399.431767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.597 5.597 3 C 0.578 3.422 4 O -0.500 6.500 5 C -0.243 4.243 6 S 0.235 5.765 7 C -0.008 4.008 8 N -0.458 5.458 9 C 0.047 3.953 10 C 0.356 3.644 11 F -0.184 7.184 12 F -0.179 7.179 13 C 0.147 3.853 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.594 5.594 17 C -0.256 4.256 18 H 0.064 0.936 19 C 0.010 3.990 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.172 3.828 26 C -0.147 4.147 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.207 0.793 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.255 0.745 38 H 0.019 0.981 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 20.906 -3.765 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.330 5.330 3 C 0.363 3.637 4 O -0.376 6.376 5 C -0.369 4.369 6 S 0.493 5.507 7 C -0.302 4.302 8 N -0.171 5.171 9 C -0.093 4.093 10 C 0.299 3.701 11 F -0.165 7.165 12 F -0.160 7.160 13 C 0.046 3.954 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.317 5.317 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.046 3.954 26 C -0.188 4.188 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.223 0.777 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.816 20.693 -3.748 23.208 hybrid contribution 0.321 -0.627 0.182 0.728 sum -9.495 20.066 -3.565 22.484 Atomic orbital electron populations 1.22014 0.80731 1.03535 1.02004 1.48029 1.06556 1.06340 1.72038 1.16790 0.86979 0.81764 0.78197 1.90928 1.11796 1.86021 1.48889 1.25943 0.97748 0.99422 1.13747 1.84567 1.02364 1.01638 1.62148 1.29102 0.97131 1.02003 1.01992 1.65922 1.01023 1.34775 1.15402 1.21047 0.97834 0.87460 1.02946 1.19427 0.82591 0.95031 0.73056 1.93058 1.90527 1.83770 1.49147 1.93075 1.79117 1.90182 1.53619 1.21345 0.97357 0.79888 0.96797 1.22390 1.01407 0.98171 0.95823 1.20890 0.95830 0.90713 0.90496 1.44036 1.77807 1.10497 0.99331 1.19179 1.20692 0.85315 1.13397 0.91810 1.25348 0.97001 0.97970 0.98601 1.69902 1.35844 1.33913 1.14988 0.86209 0.77783 0.85248 0.77467 1.20223 1.21468 1.21652 1.20903 0.95186 0.88307 0.91036 1.22643 1.01637 0.99340 0.95135 0.91549 0.88023 0.91728 0.77690 0.85715 0.88194 0.92090 0.92881 0.96088 0.92353 0.93467 0.96237 0.88137 0.92982 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 7.99 59.85 0.48 1.14 16 2 N -0.60 -8.82 2.76 -175.43 -0.48 -9.30 16 3 C 0.58 9.27 7.56 -12.85 -0.10 9.17 16 4 O -0.50 -9.76 12.47 5.20 0.06 -9.69 16 5 C -0.24 -3.14 6.20 -37.10 -0.23 -3.37 16 6 S 0.23 1.83 18.16 -107.50 -1.95 -0.12 16 7 C -0.01 -0.06 12.22 51.75 0.63 0.57 16 8 N -0.46 -4.95 10.50 -11.53 -0.12 -5.07 16 9 C 0.05 0.60 6.25 -83.89 -0.52 0.08 16 10 C 0.36 4.66 5.07 36.01 0.18 4.85 16 11 F -0.18 -2.86 16.09 2.25 0.04 -2.82 16 12 F -0.18 -2.78 15.48 2.25 0.03 -2.75 16 13 C 0.15 2.58 2.47 -67.89 -0.17 2.41 16 14 C -0.14 -2.35 5.34 -26.61 -0.14 -2.49 16 15 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 16 N -0.59 -14.53 2.99 -172.31 -0.52 -15.04 16 17 C -0.26 -6.83 9.55 -15.06 -0.14 -6.98 16 18 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 19 C 0.01 0.27 5.29 -17.43 -0.09 0.17 16 20 N -0.90 -25.67 10.72 55.49 0.59 -25.07 16 21 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 C 0.17 4.05 5.24 -3.71 -0.02 4.03 16 26 C -0.15 -2.77 5.32 -26.61 -0.14 -2.91 16 27 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 28 H 0.10 1.09 6.47 -51.93 -0.34 0.75 16 29 H 0.07 0.58 4.63 -23.87 -0.11 0.47 16 30 H 0.21 0.69 8.06 -52.48 -0.42 0.27 16 31 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.10 2.01 6.89 -51.93 -0.36 1.65 16 33 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 37 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 2.65 6.02 -51.93 -0.31 2.34 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.03 6.73 -51.93 -0.35 0.68 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -32.97 344.18 -7.24 -40.21 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.77 Total: -1.40 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -0.29 Total: 9.71 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.53 Total: -54.49 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.07 Total: -5.56 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.95 Total: -0.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.97 -7.24 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005695721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.042 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds