Wall clock time and date at job start Wed Apr 1 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00489 * 2 1 4 4 O 1.21685 * 120.00030 * 180.48434 * 3 2 1 5 5 C 1.46680 * 119.99666 * 0.48119 * 3 2 1 6 6 S 1.76209 * 126.13410 * 351.21403 * 5 3 2 7 7 C 1.70954 * 90.31816 * 180.26057 * 6 5 3 8 8 N 1.29430 * 110.39070 * 359.97438 * 7 6 5 9 9 C 1.30945 * 117.36031 * 359.97438 * 8 7 6 10 10 C 1.50701 * 122.90224 * 180.02562 * 9 8 7 11 11 F 1.39895 * 109.47439 * 119.96384 * 10 9 8 12 12 F 1.39901 * 109.47250 * 239.96702 * 10 9 8 13 13 C 1.46506 * 119.99664 * 179.97438 * 2 1 3 14 14 C 1.53038 * 109.45696 * 60.03100 * 13 2 1 15 15 C 1.53192 * 109.31265 * 178.60026 * 14 13 2 16 16 N 1.46932 * 108.76304 * 54.65018 * 15 14 13 17 17 C 1.36946 * 120.62627 * 126.41082 * 16 15 14 18 18 H 1.08001 * 119.99557 * 324.12016 * 17 16 15 19 19 C 1.38812 * 119.99805 * 144.12467 * 17 16 15 20 20 N 1.31619 * 120.00236 * 2.49687 * 19 17 16 21 21 Si 1.86794 * 119.99753 * 182.49604 * 19 17 16 22 22 H 1.48498 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47164 * 120.00040 * 21 19 17 24 24 H 1.48501 * 109.47087 * 240.00150 * 21 19 17 25 25 C 1.46924 * 118.74028 * 306.38682 * 16 15 14 26 26 C 1.53041 * 109.46064 * 299.97556 * 13 2 1 27 27 H 1.09004 * 109.46730 * 83.33637 * 1 2 3 28 28 H 1.08996 * 109.47206 * 203.34356 * 1 2 3 29 29 H 1.09003 * 109.46691 * 323.34188 * 1 2 3 30 30 H 1.08004 * 124.80303 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.46967 * 359.96184 * 10 9 8 32 32 H 1.08997 * 109.45647 * 180.02562 * 13 2 1 33 33 H 1.09001 * 109.50127 * 298.55895 * 14 13 2 34 34 H 1.08994 * 109.50092 * 58.66371 * 14 13 2 35 35 H 1.09004 * 109.59924 * 294.86762 * 15 14 13 36 36 H 1.09000 * 109.70812 * 174.50375 * 15 14 13 37 37 H 0.96997 * 119.99859 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.58703 * 293.81768 * 25 16 15 39 39 H 1.09006 * 109.69931 * 173.46357 * 25 16 15 40 40 H 1.08997 * 109.49308 * 301.33358 * 26 13 2 41 41 H 1.08998 * 109.49460 * 61.43263 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3558 1.1670 -0.0089 5 6 1.4056 2.4374 0.0107 6 16 -0.3334 2.6350 -0.1932 7 6 -0.1682 4.3298 -0.0422 8 7 1.0733 4.6475 0.1392 9 6 1.9453 3.6712 0.1750 10 6 3.4209 3.8987 0.3796 11 9 3.8393 3.2332 1.5368 12 9 4.1262 3.4050 -0.7231 13 6 2.1975 -1.2688 0.0006 14 6 1.8280 -2.0712 -1.2491 15 6 2.6218 -3.3814 -1.2630 16 7 2.3847 -4.0910 0.0016 17 6 1.9517 -5.3902 0.0020 18 1 1.2611 -5.7294 -0.7560 19 6 2.4002 -6.2710 0.9766 20 7 3.2030 -5.8456 1.9289 21 14 1.8646 -8.0600 0.9364 22 1 0.9679 -8.2823 -0.2263 23 1 3.0602 -8.9322 0.8139 24 1 1.1391 -8.3878 2.1900 25 6 2.6216 -3.3805 1.2656 26 6 1.8280 -2.0703 1.2509 27 1 -0.3633 0.1193 -1.0208 28 1 -0.3633 -0.9435 0.4072 29 1 -0.3633 0.8244 0.6136 30 1 -0.9844 5.0354 -0.0904 31 1 3.6127 4.9665 0.4851 32 1 3.2690 -1.0694 0.0009 33 1 0.7608 -2.2925 -1.2372 34 1 2.0697 -1.4903 -2.1391 35 1 3.6849 -3.1637 -1.3660 36 1 2.2933 -4.0014 -2.0971 37 1 3.5167 -6.4612 2.6097 38 1 3.6846 -3.1628 1.3688 39 1 2.2922 -3.9978 2.1015 40 1 2.0697 -1.4886 2.1404 41 1 0.7607 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005695721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:28 Heat of formation + Delta-G solvation = -71.201909 kcal Electronic energy + Delta-G solvation = -28853.939055 eV Core-core repulsion = 24532.006454 eV Total energy + Delta-G solvation = -4321.932601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95840 -47.98415 -41.58175 -40.64717 -38.93796 -36.70843 -34.45188 -32.66561 -31.80958 -31.34378 -29.06274 -28.30066 -26.86504 -25.68958 -24.25340 -23.86268 -22.25792 -20.76550 -20.47132 -19.79201 -18.79132 -18.30069 -18.17270 -17.96301 -17.36901 -17.02032 -16.83549 -16.64142 -15.97477 -15.47302 -15.36446 -15.34971 -14.86104 -14.82152 -14.74318 -14.36956 -14.27453 -14.18899 -14.09733 -13.96272 -13.69198 -13.27720 -13.13115 -12.84036 -12.76127 -12.54668 -12.12235 -12.05560 -11.94462 -11.90948 -11.56408 -11.40109 -11.18570 -10.81188 -10.65923 -10.56608 -10.27567 -9.69127 -8.59001 -7.87024 -5.44455 -1.01954 -0.05164 0.44787 1.15234 1.47715 1.49963 1.60001 1.71990 1.87741 2.35669 2.50307 3.13687 3.19727 3.30428 3.56390 3.66593 3.77868 3.89412 3.93038 3.95685 4.02236 4.16316 4.28788 4.40116 4.44279 4.58468 4.64288 4.64664 4.77651 4.85119 5.00280 5.04019 5.13045 5.29186 5.41827 5.49994 5.65406 5.75511 6.14496 6.33304 6.45116 6.88701 7.16849 7.82375 8.38798 9.18329 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.002867 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.727754 B = 9765.090297 C =10399.431767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.597 5.597 3 C 0.573 3.427 4 O -0.551 6.551 5 C -0.292 4.292 6 S 0.317 5.683 7 C 0.008 3.992 8 N -0.480 5.480 9 C 0.045 3.955 10 C 0.341 3.659 11 F -0.204 7.204 12 F -0.198 7.198 13 C 0.158 3.842 14 C -0.120 4.120 15 C 0.144 3.856 16 N -0.610 5.610 17 C -0.263 4.263 18 H 0.072 0.928 19 C -0.046 4.046 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.262 1.262 23 H -0.295 1.295 24 H -0.290 1.290 25 C 0.180 3.820 26 C -0.129 4.129 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.253 0.747 31 H 0.161 0.839 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.005 0.995 36 H 0.067 0.933 37 H 0.250 0.750 38 H -0.016 1.016 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 22.509 -5.012 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.328 5.328 3 C 0.360 3.640 4 O -0.430 6.430 5 C -0.418 4.418 6 S 0.576 5.424 7 C -0.285 4.285 8 N -0.194 5.194 9 C -0.097 4.097 10 C 0.285 3.715 11 F -0.185 7.185 12 F -0.180 7.180 13 C 0.055 3.945 14 C -0.160 4.160 15 C 0.018 3.982 16 N -0.334 5.334 17 C -0.393 4.393 18 H 0.089 0.911 19 C -0.241 4.241 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.186 1.186 23 H -0.222 1.222 24 H -0.217 1.217 25 C 0.054 3.946 26 C -0.169 4.169 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.268 0.732 31 H 0.178 0.822 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.002 0.998 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.814 22.313 -5.024 26.719 hybrid contribution 1.465 -1.024 0.543 1.868 sum -12.349 21.288 -4.481 25.016 Atomic orbital electron populations 1.22346 0.77817 1.04668 1.04186 1.47909 1.08228 1.04891 1.71772 1.17222 0.86703 0.82945 0.77150 1.90893 1.14138 1.86932 1.51041 1.25714 1.01466 0.97773 1.16851 1.84096 0.97124 1.01052 1.60097 1.29943 0.97048 1.03078 0.98420 1.65993 1.01976 1.34181 1.17206 1.21004 0.97742 0.88079 1.02852 1.19998 0.83404 0.96348 0.71758 1.93004 1.90878 1.84410 1.50247 1.93022 1.79747 1.90610 1.54584 1.20896 0.96049 0.81273 0.96290 1.22174 1.01627 0.96024 0.96175 1.21013 0.95682 0.92388 0.89128 1.44263 1.77966 1.10532 1.00596 1.19541 1.20447 0.86267 1.13075 0.91058 1.26121 0.97559 1.01916 0.98546 1.70105 1.37490 1.34891 1.15717 0.85159 0.77143 0.80140 0.77729 1.18602 1.22206 1.21660 1.20597 0.93785 0.90062 0.90158 1.22348 1.01546 0.96882 0.96142 0.88851 0.87689 0.89892 0.73153 0.82173 0.91635 0.90225 0.91082 0.97699 0.91484 0.94049 0.99754 0.91168 0.92888 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 7.99 127.77 1.02 1.96 16 2 N -0.60 -16.90 2.76 -827.15 -2.28 -19.19 16 3 C 0.57 18.32 7.56 86.45 0.65 18.98 16 4 O -0.55 -22.53 12.47 -4.30 -0.05 -22.58 16 5 C -0.29 -7.08 6.20 23.88 0.15 -6.93 16 6 S 0.32 3.56 18.16 -56.49 -1.03 2.53 16 7 C 0.01 0.08 12.22 130.60 1.60 1.68 16 8 N -0.48 -8.96 10.50 -190.39 -2.00 -10.96 16 9 C 0.05 1.10 6.25 42.09 0.26 1.36 16 10 C 0.34 9.05 5.07 71.24 0.36 9.41 16 11 F -0.20 -6.63 16.09 44.97 0.72 -5.90 16 12 F -0.20 -6.43 15.48 44.97 0.70 -5.73 16 13 C 0.16 5.54 2.47 45.02 0.11 5.65 16 14 C -0.12 -3.94 5.34 30.67 0.16 -3.78 16 15 C 0.14 5.97 6.52 86.36 0.56 6.53 16 16 N -0.61 -30.39 2.99 -699.07 -2.09 -32.48 16 17 C -0.26 -14.10 9.55 84.03 0.80 -13.30 16 18 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 19 C -0.05 -2.53 5.29 84.86 0.45 -2.08 16 20 N -0.94 -55.24 10.72 21.65 0.23 -55.00 16 21 Si 0.97 43.96 29.55 68.60 2.03 45.99 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 C 0.18 8.90 5.24 86.36 0.45 9.35 16 26 C -0.13 -4.91 5.32 30.67 0.16 -4.74 16 27 H 0.09 1.19 7.81 -2.39 -0.02 1.17 16 28 H 0.10 1.85 6.47 -2.39 -0.02 1.83 16 29 H 0.08 1.14 4.63 -20.22 -0.09 1.05 16 30 H 0.25 0.05 8.06 -2.91 -0.02 0.03 16 31 H 0.16 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.07 2.79 6.89 -2.39 -0.02 2.77 16 33 H 0.08 2.35 7.72 -2.39 -0.02 2.33 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 37 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 38 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.07 3.89 6.02 -2.38 -0.01 3.87 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.58 6.73 -2.39 -0.02 2.56 16 Total: -1.00 -77.18 344.18 3.97 -73.22 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.99 Total: 6.04 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 6.75 Total: 24.08 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -6.14 Total: -117.63 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 9 Polarization: -13.06 SS G_CDS: 1.42 Total: -11.64 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.03 Total: 2.53 kcal Total: -77.18 3.97 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005695721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.015 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds