Wall clock time and date at job start Wed Apr 1 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00180 * 2 1 4 4 H 1.07997 * 120.00416 * 202.90998 * 3 2 1 5 5 C 1.38812 * 119.99860 * 22.89607 * 3 2 1 6 6 N 1.31621 * 120.00198 * 10.55291 * 5 3 2 7 7 Si 1.86807 * 120.00191 * 190.54456 * 5 3 2 8 8 H 1.48500 * 109.46874 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46782 * 120.00263 * 7 5 3 10 10 H 1.48495 * 109.47375 * 240.00527 * 7 5 3 11 11 C 1.46502 * 120.00014 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49399 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49782 * 59.99745 * 11 2 1 14 14 C 1.53045 * 109.53716 * 178.68146 * 13 11 2 15 15 C 1.53191 * 109.31098 * 61.36896 * 14 13 11 16 16 N 1.46928 * 108.77334 * 305.36103 * 15 14 13 17 17 C 1.34775 * 120.63429 * 233.60587 * 16 15 14 18 18 O 1.21688 * 120.00477 * 184.98654 * 17 16 15 19 19 C 1.46681 * 119.99421 * 4.99202 * 17 16 15 20 20 S 1.76210 * 126.13351 * 87.10920 * 19 17 16 21 21 C 1.70952 * 90.31611 * 179.91800 * 20 19 17 22 22 N 1.29429 * 110.39278 * 0.34652 * 21 20 19 23 23 C 1.30940 * 117.35992 * 359.72611 * 22 21 20 24 24 C 1.50704 * 122.90549 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46970 * 29.62482 * 24 23 22 26 26 F 1.39902 * 109.47329 * 149.62427 * 24 23 22 27 27 C 1.46931 * 118.73832 * 53.61143 * 16 15 14 28 28 H 1.09008 * 109.46746 * 265.64748 * 1 2 3 29 29 H 1.08998 * 109.47520 * 25.64813 * 1 2 3 30 30 H 1.09002 * 109.47207 * 145.65400 * 1 2 3 31 31 H 0.96998 * 120.00023 * 179.97438 * 6 5 3 32 32 H 1.08992 * 109.45911 * 298.70383 * 13 11 2 33 33 H 1.09002 * 109.45602 * 58.66431 * 13 11 2 34 34 H 1.08998 * 109.49389 * 181.31777 * 14 13 11 35 35 H 1.08998 * 109.49585 * 301.38634 * 14 13 11 36 36 H 1.08997 * 109.58583 * 65.14713 * 15 14 13 37 37 H 1.08996 * 109.58466 * 185.43625 * 15 14 13 38 38 H 1.08007 * 124.80744 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.46849 * 269.62873 * 24 23 22 40 40 H 1.09000 * 109.58507 * 186.60000 * 27 16 15 41 41 H 1.09001 * 109.58252 * 66.17659 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1658 1.2228 -0.3641 5 6 1.5377 2.3406 0.4677 6 7 0.3856 2.2652 1.0998 7 14 2.3492 4.0019 0.2003 8 1 3.6279 3.8160 -0.5315 9 1 1.4459 4.8716 -0.5952 10 1 2.6186 4.6385 1.5146 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8282 -2.0724 -1.2484 14 6 2.6176 -3.3834 -1.2654 15 6 2.2496 -4.2124 -0.0309 16 7 2.4654 -3.3936 1.1699 17 6 3.2361 -3.8448 2.1793 18 8 3.3342 -3.1985 3.2058 19 6 3.9569 -5.1148 2.0405 20 16 5.5565 -5.3298 1.3335 21 6 5.4730 -7.0109 1.6324 22 7 4.3463 -7.3140 2.1926 23 6 3.5089 -6.3353 2.4282 24 6 2.1636 -6.5464 3.0738 25 9 2.2267 -7.6484 3.9333 26 9 1.8122 -5.4055 3.8033 27 6 1.8248 -2.0737 1.2495 28 1 -0.3633 -0.0780 1.0248 29 1 -0.3634 0.9264 -0.4448 30 1 -0.3634 -0.8485 -0.5798 31 1 -0.0419 3.0721 1.4269 32 1 0.7606 -2.2914 -1.2367 33 1 2.0698 -1.4914 -2.1385 34 1 2.3715 -3.9445 -2.1669 35 1 3.6854 -3.1652 -1.2527 36 1 1.2021 -4.5080 -0.0882 37 1 2.8785 -5.1016 0.0128 38 1 6.2484 -7.7205 1.3839 39 1 1.4153 -6.7294 2.3026 40 1 2.1751 -1.5507 2.1394 41 1 0.7426 -2.1951 1.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027486487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:33 Heat of formation + Delta-G solvation = -50.373631 kcal Electronic energy + Delta-G solvation = -29010.009948 eV Core-core repulsion = 24688.980528 eV Total energy + Delta-G solvation = -4321.029419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.16372 -47.17386 -40.64507 -39.52244 -37.48558 -35.18693 -32.63228 -31.71507 -31.32028 -29.05274 -27.87779 -26.05473 -25.33222 -24.98130 -23.63176 -21.97183 -21.30745 -19.84958 -19.15952 -18.44919 -17.91672 -17.54869 -16.84088 -16.68909 -16.42019 -15.93777 -15.33371 -15.03193 -14.65556 -14.52149 -14.23653 -13.97201 -13.90027 -13.66003 -13.49052 -13.41759 -13.20728 -12.82281 -12.66971 -12.45637 -12.28275 -11.94919 -11.40589 -11.29223 -11.12563 -10.86606 -10.71657 -10.48495 -10.41109 -10.36971 -10.24622 -10.06868 -9.91474 -9.82376 -9.70929 -9.49144 -8.65013 -8.44395 -6.80859 -5.78504 -3.23490 -0.03904 0.58824 1.12466 2.02696 2.62555 2.99695 3.16399 3.36267 3.43302 3.45192 3.77131 4.07150 4.32420 4.44523 4.46896 4.60092 4.78471 4.95044 5.03265 5.17860 5.30070 5.37665 5.42971 5.47391 5.65252 5.80686 5.89288 6.02085 6.14428 6.28953 6.40390 6.53770 6.73469 6.85896 6.88745 7.03780 7.35854 7.40837 7.66109 7.78026 8.09165 8.36737 9.18852 9.80545 10.28949 11.27511 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.003165 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.296701 B = 8845.028429 C = 9181.502133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.168 3.832 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.105 3.895 16 N -0.592 5.592 17 C 0.583 3.417 18 O -0.504 6.504 19 C -0.227 4.227 20 S 0.228 5.772 21 C 0.012 3.988 22 N -0.445 5.445 23 C 0.020 3.980 24 C 0.347 3.653 25 F -0.186 7.186 26 F -0.179 7.179 27 C 0.100 3.900 28 H 0.016 0.984 29 H 0.063 0.937 30 H -0.005 1.005 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.212 0.788 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -20.789 -4.382 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.311 5.311 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.058 3.942 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.168 4.168 15 C -0.018 4.018 16 N -0.325 5.325 17 C 0.365 3.635 18 O -0.379 6.379 19 C -0.353 4.353 20 S 0.484 5.516 21 C -0.284 4.284 22 N -0.157 5.157 23 C -0.119 4.119 24 C 0.291 3.709 25 F -0.167 7.167 26 F -0.160 7.160 27 C -0.023 4.023 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.228 0.772 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.529 -20.173 -4.063 21.912 hybrid contribution -0.344 0.598 0.488 0.845 sum 7.185 -19.575 -3.575 21.156 Atomic orbital electron populations 1.20835 0.82429 0.97629 0.97633 1.43959 1.01951 0.99917 1.85280 1.19282 0.98370 0.85236 1.35719 0.91283 1.25051 0.97668 0.98686 0.98067 1.70070 1.17660 1.27270 1.40010 0.86157 0.78678 0.84071 0.77455 1.20304 1.21587 1.21619 1.20655 0.96574 0.86329 0.90607 0.91676 1.22086 0.99767 0.94791 1.00679 1.21898 1.01148 0.97342 0.96454 1.21781 1.01523 0.93444 0.85064 1.48247 1.48170 1.19301 1.16821 1.16750 0.79662 0.82934 0.84124 1.90902 1.63178 1.56362 1.27453 1.25729 1.01401 0.99084 1.09101 1.84285 1.10590 1.05216 1.51529 1.28682 0.98785 0.98968 1.01989 1.65761 1.02220 1.33936 1.13773 1.20945 0.98824 0.87434 1.04663 1.19665 0.92042 0.72955 0.86254 1.93031 1.97248 1.53538 1.72854 1.93143 1.92479 1.50702 1.79631 1.22701 0.97107 0.79816 1.02717 0.96526 0.91844 0.98625 0.93649 0.92048 0.91450 0.90976 0.91638 0.90917 0.91152 0.77199 0.85322 0.88785 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 7.98 59.85 0.48 4.23 16 2 N -0.59 -14.15 2.82 -173.35 -0.49 -14.63 16 3 C -0.26 -6.87 9.60 -15.06 -0.14 -7.02 16 4 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -25.98 10.62 55.49 0.59 -25.39 16 7 Si 0.91 21.62 29.57 -169.99 -5.03 16.59 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.17 3.25 2.75 -67.81 -0.19 3.06 16 12 H 0.06 1.33 7.87 -51.93 -0.41 0.92 16 13 C -0.13 -2.04 5.11 -26.69 -0.14 -2.17 16 14 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 15 C 0.11 1.18 6.34 -3.71 -0.02 1.15 16 16 N -0.59 -8.99 2.97 -174.31 -0.52 -9.51 16 17 C 0.58 9.54 5.79 -12.85 -0.07 9.47 16 18 O -0.50 -10.49 16.04 5.20 0.08 -10.41 16 19 C -0.23 -2.94 4.13 -37.09 -0.15 -3.09 16 20 S 0.23 2.05 23.21 -107.50 -2.50 -0.44 16 21 C 0.01 0.09 12.22 51.75 0.63 0.72 16 22 N -0.44 -4.91 10.30 -11.53 -0.12 -5.02 16 23 C 0.02 0.24 6.51 -83.89 -0.55 -0.31 16 24 C 0.35 4.17 5.69 36.01 0.20 4.37 16 25 F -0.19 -2.42 17.17 2.25 0.04 -2.38 16 26 F -0.18 -2.75 15.03 2.25 0.03 -2.72 16 27 C 0.10 1.86 5.78 -3.71 -0.02 1.84 16 28 H 0.02 0.42 7.87 -51.92 -0.41 0.01 16 29 H 0.06 1.65 6.60 -51.93 -0.34 1.31 16 30 H 0.00 -0.09 6.47 -51.93 -0.34 -0.43 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.06 0.94 6.75 -51.93 -0.35 0.59 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.66 6.32 -51.93 -0.33 0.33 16 38 H 0.21 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 2.09 7.03 -51.93 -0.37 1.73 16 41 H 0.07 1.26 7.51 -51.93 -0.39 0.87 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -33.36 353.44 -7.81 -41.17 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.01 Total: -3.24 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.22 Total: 10.65 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.54 Total: -54.56 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.50 Total: -0.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.36 -7.81 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027486487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.206 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds