Wall clock time and date at job start Wed Apr 1 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00180 * 2 1 4 4 H 1.07997 * 120.00416 * 202.90998 * 3 2 1 5 5 C 1.38812 * 119.99860 * 22.89607 * 3 2 1 6 6 N 1.31621 * 120.00198 * 10.55291 * 5 3 2 7 7 Si 1.86807 * 120.00191 * 190.54456 * 5 3 2 8 8 H 1.48500 * 109.46874 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46782 * 120.00263 * 7 5 3 10 10 H 1.48495 * 109.47375 * 240.00527 * 7 5 3 11 11 C 1.46502 * 120.00014 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49399 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49782 * 59.99745 * 11 2 1 14 14 C 1.53045 * 109.53716 * 178.68146 * 13 11 2 15 15 C 1.53191 * 109.31098 * 61.36896 * 14 13 11 16 16 N 1.46928 * 108.77334 * 305.36103 * 15 14 13 17 17 C 1.34775 * 120.63429 * 233.60587 * 16 15 14 18 18 O 1.21688 * 120.00477 * 184.98654 * 17 16 15 19 19 C 1.46681 * 119.99421 * 4.99202 * 17 16 15 20 20 S 1.76210 * 126.13351 * 87.10920 * 19 17 16 21 21 C 1.70952 * 90.31611 * 179.91800 * 20 19 17 22 22 N 1.29429 * 110.39278 * 0.34652 * 21 20 19 23 23 C 1.30940 * 117.35992 * 359.72611 * 22 21 20 24 24 C 1.50704 * 122.90549 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46970 * 29.62482 * 24 23 22 26 26 F 1.39902 * 109.47329 * 149.62427 * 24 23 22 27 27 C 1.46931 * 118.73832 * 53.61143 * 16 15 14 28 28 H 1.09008 * 109.46746 * 265.64748 * 1 2 3 29 29 H 1.08998 * 109.47520 * 25.64813 * 1 2 3 30 30 H 1.09002 * 109.47207 * 145.65400 * 1 2 3 31 31 H 0.96998 * 120.00023 * 179.97438 * 6 5 3 32 32 H 1.08992 * 109.45911 * 298.70383 * 13 11 2 33 33 H 1.09002 * 109.45602 * 58.66431 * 13 11 2 34 34 H 1.08998 * 109.49389 * 181.31777 * 14 13 11 35 35 H 1.08998 * 109.49585 * 301.38634 * 14 13 11 36 36 H 1.08997 * 109.58583 * 65.14713 * 15 14 13 37 37 H 1.08996 * 109.58466 * 185.43625 * 15 14 13 38 38 H 1.08007 * 124.80744 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.46849 * 269.62873 * 24 23 22 40 40 H 1.09000 * 109.58507 * 186.60000 * 27 16 15 41 41 H 1.09001 * 109.58252 * 66.17659 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1658 1.2228 -0.3641 5 6 1.5377 2.3406 0.4677 6 7 0.3856 2.2652 1.0998 7 14 2.3492 4.0019 0.2003 8 1 3.6279 3.8160 -0.5315 9 1 1.4459 4.8716 -0.5952 10 1 2.6186 4.6385 1.5146 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8282 -2.0724 -1.2484 14 6 2.6176 -3.3834 -1.2654 15 6 2.2496 -4.2124 -0.0309 16 7 2.4654 -3.3936 1.1699 17 6 3.2361 -3.8448 2.1793 18 8 3.3342 -3.1985 3.2058 19 6 3.9569 -5.1148 2.0405 20 16 5.5565 -5.3298 1.3335 21 6 5.4730 -7.0109 1.6324 22 7 4.3463 -7.3140 2.1926 23 6 3.5089 -6.3353 2.4282 24 6 2.1636 -6.5464 3.0738 25 9 2.2267 -7.6484 3.9333 26 9 1.8122 -5.4055 3.8033 27 6 1.8248 -2.0737 1.2495 28 1 -0.3633 -0.0780 1.0248 29 1 -0.3634 0.9264 -0.4448 30 1 -0.3634 -0.8485 -0.5798 31 1 -0.0419 3.0721 1.4269 32 1 0.7606 -2.2914 -1.2367 33 1 2.0698 -1.4914 -2.1385 34 1 2.3715 -3.9445 -2.1669 35 1 3.6854 -3.1652 -1.2527 36 1 1.2021 -4.5080 -0.0882 37 1 2.8785 -5.1016 0.0128 38 1 6.2484 -7.7205 1.3839 39 1 1.4153 -6.7294 2.3026 40 1 2.1751 -1.5507 2.1394 41 1 0.7426 -2.1951 1.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027486487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:33 Heat of formation + Delta-G solvation = -72.733821 kcal Electronic energy + Delta-G solvation = -29010.979558 eV Core-core repulsion = 24688.980528 eV Total energy + Delta-G solvation = -4321.999030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.15939 -48.18745 -41.68983 -40.57676 -38.91874 -36.83844 -34.13610 -32.88175 -32.65464 -30.56852 -28.91652 -28.05305 -26.41974 -25.85968 -25.28177 -23.18114 -22.57647 -20.82923 -20.45780 -19.52118 -18.92194 -18.76371 -18.52015 -17.79545 -17.45848 -17.02196 -16.95382 -16.25582 -15.79692 -15.63298 -15.48485 -15.28043 -15.07951 -15.00130 -14.77797 -14.50831 -14.41606 -14.14954 -14.00514 -13.86920 -13.57376 -13.25306 -12.96742 -12.86471 -12.51010 -12.28017 -12.21129 -12.12328 -12.11017 -11.82321 -11.70564 -11.47151 -11.41010 -10.93755 -10.64990 -10.60792 -10.27506 -9.83794 -8.77239 -7.86423 -5.33322 -0.83665 -0.23165 0.40569 1.23548 1.44158 1.44815 1.46186 1.56178 1.80931 2.34910 2.49568 2.95034 3.15855 3.29496 3.37539 3.58612 3.67402 3.86387 3.97537 3.99658 4.03844 4.11860 4.20369 4.34305 4.53460 4.62865 4.65187 4.76993 4.83770 4.93605 5.02202 5.13387 5.28031 5.37714 5.40803 5.56081 5.60349 5.72750 6.18687 6.29441 6.32898 6.86590 7.13729 7.84866 8.27371 9.18004 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.003165 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.296701 B = 8845.028429 C = 9181.502133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.607 5.607 3 C -0.263 4.263 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.265 1.265 9 H -0.287 1.287 10 H -0.296 1.296 11 C 0.167 3.833 12 H 0.049 0.951 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.100 3.900 16 N -0.589 5.589 17 C 0.586 3.414 18 O -0.565 6.565 19 C -0.268 4.268 20 S 0.268 5.732 21 C 0.042 3.958 22 N -0.470 5.470 23 C 0.029 3.971 24 C 0.334 3.666 25 F -0.194 7.194 26 F -0.204 7.204 27 C 0.116 3.884 28 H -0.013 1.013 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.248 0.752 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.258 0.742 39 H 0.171 0.829 40 H 0.046 0.954 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 -23.859 -6.896 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.330 5.330 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.189 1.189 9 H -0.214 1.214 10 H -0.224 1.224 11 C 0.059 3.941 12 H 0.067 0.933 13 C -0.162 4.162 14 C -0.158 4.158 15 C -0.022 4.022 16 N -0.321 5.321 17 C 0.371 3.629 18 O -0.444 6.444 19 C -0.394 4.394 20 S 0.525 5.475 21 C -0.253 4.253 22 N -0.183 5.183 23 C -0.110 4.110 24 C 0.278 3.722 25 F -0.175 7.175 26 F -0.186 7.186 27 C -0.009 4.009 28 H 0.006 0.994 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.274 0.726 39 H 0.187 0.813 40 H 0.064 0.936 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.319 -23.301 -6.638 25.958 hybrid contribution -0.768 1.397 1.262 2.034 sum 8.552 -21.903 -5.376 24.120 Atomic orbital electron populations 1.20537 0.82503 0.97568 0.96172 1.44171 1.02224 1.00946 1.85639 1.19601 0.98439 0.86618 1.34691 0.91237 1.25794 0.98443 1.01944 0.98486 1.70237 1.19102 1.27586 1.41547 0.85184 0.78243 0.80017 0.76890 1.18936 1.21410 1.22362 1.20810 0.95154 0.85255 0.92891 0.93297 1.21918 1.00678 0.96124 0.97459 1.21879 1.00533 0.95310 0.98099 1.22140 1.03482 0.93627 0.82910 1.48212 1.47381 1.18218 1.18269 1.17152 0.79050 0.83600 0.83128 1.90862 1.65037 1.58699 1.29818 1.25326 1.03800 0.97379 1.12941 1.84189 1.07422 1.05680 1.50227 1.29530 0.98185 0.99139 0.98424 1.65860 1.03279 1.33510 1.15625 1.20950 0.98926 0.87424 1.03710 1.20261 0.93615 0.71754 0.86527 1.93005 1.97376 1.53767 1.73337 1.93095 1.92769 1.52260 1.80434 1.22116 0.96774 0.81680 1.00290 0.99424 0.94707 0.94928 0.94253 0.91629 0.91967 0.86938 0.91438 0.88981 0.88387 0.72595 0.81279 0.93551 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.59 7.98 127.77 1.02 9.61 16 2 N -0.61 -29.96 2.82 -702.35 -1.98 -31.94 16 3 C -0.26 -14.49 9.60 84.03 0.81 -13.68 16 4 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 5 C -0.05 -2.92 5.10 84.86 0.43 -2.48 16 6 N -0.94 -56.12 10.62 21.65 0.23 -55.89 16 7 Si 0.97 45.53 29.57 68.60 2.03 47.55 16 8 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 11 C 0.17 6.53 2.75 45.07 0.12 6.66 16 12 H 0.05 2.04 7.87 -2.39 -0.02 2.02 16 13 C -0.12 -3.48 5.11 30.62 0.16 -3.33 16 14 C -0.12 -2.25 6.08 30.67 0.19 -2.06 16 15 C 0.10 1.91 6.34 86.36 0.55 2.46 16 16 N -0.59 -17.66 2.97 -823.61 -2.45 -20.11 16 17 C 0.59 19.38 5.79 86.45 0.50 19.88 16 18 O -0.57 -24.93 16.04 -4.31 -0.07 -25.00 16 19 C -0.27 -6.52 4.13 23.88 0.10 -6.42 16 20 S 0.27 3.96 23.21 -56.49 -1.31 2.64 16 21 C 0.04 0.46 12.22 130.60 1.60 2.06 16 22 N -0.47 -8.75 10.30 -190.39 -1.96 -10.71 16 23 C 0.03 0.66 6.51 42.10 0.27 0.93 16 24 C 0.33 7.60 5.69 71.24 0.41 8.00 16 25 F -0.19 -4.84 17.17 44.97 0.77 -4.07 16 26 F -0.20 -6.43 15.03 44.97 0.68 -5.75 16 27 C 0.12 4.50 5.78 86.36 0.50 5.00 16 28 H -0.01 -0.68 7.87 -2.38 -0.02 -0.70 16 29 H 0.03 1.86 6.60 -2.39 -0.02 1.84 16 30 H 0.03 1.31 6.47 -2.39 -0.02 1.29 16 31 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.07 1.82 6.75 -2.39 -0.02 1.81 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.42 6.32 -2.39 -0.02 1.41 16 38 H 0.26 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 2.23 7.03 -2.39 -0.02 2.22 16 41 H 0.06 2.48 7.51 -2.39 -0.02 2.46 16 Total: -1.00 -79.28 353.44 3.66 -75.63 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.07 Total: 1.01 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 6.65 Total: 26.63 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -6.16 Total: -118.64 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.07 Total: -25.00 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 1.45 Total: -9.82 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.31 Total: 2.64 kcal Total: -79.28 3.66 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027486487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.891 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds