Wall clock time and date at job start Wed Apr 1 2020 03:09:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36938 * 119.99583 * 2 1
4 4 H 1.08005 * 119.99708 * 158.32571 * 3 2 1
5 5 C 1.38811 * 120.00081 * 338.31418 * 3 2 1
6 6 N 1.31613 * 120.00263 * 348.17403 * 5 3 2
7 7 Si 1.86798 * 119.99732 * 168.17389 * 5 3 2
8 8 H 1.48498 * 109.47199 * 84.99123 * 7 5 3
9 9 H 1.48500 * 109.47114 * 204.98999 * 7 5 3
10 10 H 1.48503 * 109.47346 * 324.99010 * 7 5 3
11 11 C 1.46494 * 119.99797 * 180.26708 * 2 1 3
12 12 H 1.09001 * 109.49666 * 179.65997 * 11 2 1
13 13 C 1.53036 * 109.50269 * 299.72547 * 11 2 1
14 14 C 1.53033 * 109.54262 * 181.31751 * 13 11 2
15 15 C 1.53199 * 109.31327 * 298.63733 * 14 13 11
16 16 N 1.46928 * 108.77379 * 54.63130 * 15 14 13
17 17 C 1.34779 * 120.62813 * 126.36778 * 16 15 14
18 18 O 1.21686 * 119.99920 * 4.72455 * 17 16 15
19 19 C 1.46680 * 119.99920 * 184.71602 * 17 16 15
20 20 S 1.76213 * 126.12719 * 43.76292 * 19 17 16
21 21 C 1.70953 * 90.31253 * 179.97438 * 20 19 17
22 22 N 1.29426 * 110.39203 * 0.02562 * 21 20 19
23 23 C 1.30943 * 117.36577 * 359.73069 * 22 21 20
24 24 C 1.50695 * 122.90696 * 180.30765 * 23 22 21
25 25 F 1.39900 * 109.46834 * 120.19393 * 24 23 22
26 26 F 1.39904 * 109.46867 * 240.18981 * 24 23 22
27 27 C 1.46926 * 118.74096 * 306.39521 * 16 15 14
28 28 H 1.09002 * 109.47396 * 84.93026 * 1 2 3
29 29 H 1.09004 * 109.47213 * 204.92791 * 1 2 3
30 30 H 1.09002 * 109.47585 * 324.92650 * 1 2 3
31 31 H 0.97001 * 120.00523 * 179.97438 * 6 5 3
32 32 H 1.09005 * 109.45834 * 301.34205 * 13 11 2
33 33 H 1.09005 * 109.45986 * 61.29294 * 13 11 2
34 34 H 1.08999 * 109.49704 * 58.58658 * 14 13 11
35 35 H 1.08994 * 109.50123 * 178.68346 * 14 13 11
36 36 H 1.09003 * 109.58464 * 174.42056 * 15 14 13
37 37 H 1.08995 * 109.58492 * 294.70668 * 15 14 13
38 38 H 1.08007 * 124.80181 * 179.97438 * 21 20 19
39 39 H 1.08998 * 109.47467 * 0.19192 * 24 23 22
40 40 H 1.09005 * 109.58501 * 293.82147 * 27 16 15
41 41 H 1.08996 * 109.58890 * 173.39856 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1860 0.0000
4 1 3.1724 1.2191 0.3455
5 6 1.5292 2.3455 -0.4442
6 7 0.3779 2.2746 -1.0780
7 14 2.3283 4.0067 -0.1424
8 1 3.3090 4.2876 -1.2216
9 1 1.2852 5.0637 -0.1342
10 1 3.0261 3.9896 1.1684
11 6 2.1974 -1.2687 -0.0059
12 1 3.2692 -1.0700 -0.0111
13 6 1.8334 -2.0746 1.2431
14 6 2.6228 -3.3856 1.2544
15 6 2.2497 -4.2124 0.0198
16 7 2.4604 -3.3914 -1.1804
17 6 3.2275 -3.8405 -2.1935
18 8 3.6828 -4.9684 -2.1582
19 6 3.5133 -2.9697 -3.3387
20 16 3.9589 -1.2665 -3.2631
21 6 4.0588 -1.2073 -4.9687
22 7 3.7783 -2.3639 -5.4773
23 6 3.4868 -3.3325 -4.6457
24 6 3.1481 -4.7285 -5.1012
25 9 4.0664 -5.6324 -4.5563
26 9 1.8581 -5.0588 -4.6722
27 6 1.8196 -2.0714 -1.2548
28 1 -0.3634 0.0908 -1.0236
29 1 -0.3634 -0.9320 0.4331
30 1 -0.3634 0.8410 0.5905
31 1 -0.0559 3.0849 -1.3881
32 1 2.0786 -1.4953 2.1333
33 1 0.7656 -2.2937 1.2355
34 1 3.6906 -3.1675 1.2371
35 1 2.3805 -3.9484 2.1559
36 1 2.8801 -5.1003 -0.0294
37 1 1.2031 -4.5102 0.0821
38 1 4.3185 -0.3288 -5.5409
39 1 3.1927 -4.7766 -6.1892
40 1 0.7372 -2.1926 -1.2976
41 1 2.1661 -1.5466 -2.1451
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027486488.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:35
Heat of formation + Delta-G solvation = -49.461793 kcal
Electronic energy + Delta-G solvation = -29495.683598 eV
Core-core repulsion = 25174.693719 eV
Total energy + Delta-G solvation = -4320.989879 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.106 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-48.90478 -46.88860 -40.41374 -39.45681 -37.49737 -35.03539 -32.76296 -31.74873
-31.03622 -28.88981 -27.95072 -26.13329 -25.21630 -24.64838 -23.65700 -22.26775
-20.74602 -19.60751 -19.30726 -18.42285 -17.43357 -17.18850 -16.81326 -16.65939
-16.30572 -15.76716 -15.21867 -14.96474 -14.66480 -14.35388 -14.10699 -13.96225
-13.71951 -13.65086 -13.32017 -13.24472 -12.89503 -12.72894 -12.69706 -12.43773
-12.17129 -11.99200 -11.31002 -11.12611 -11.02311 -10.89764 -10.66999 -10.59103
-10.48500 -10.43202 -10.12894 -9.94827 -9.92864 -9.81276 -9.43384 -9.08244
-8.70366 -8.45871 -6.90940 -5.84477 -3.31403 0.13718 1.00023 1.46430
2.23582 2.86010 3.08773 3.28296 3.35039 3.36737 3.37762 4.07450
4.30368 4.42079 4.60215 4.72102 5.02017 5.08048 5.15164 5.15990
5.21473 5.31635 5.45554 5.55084 5.57420 5.59470 5.81974 5.91758
6.00883 6.09548 6.23143 6.28129 6.58905 6.65856 6.71044 6.80880
7.28521 7.29343 7.43490 7.60952 7.69841 8.12068 8.26146 9.10285
9.72469 10.20929 11.19412
Molecular weight = 345.11amu
Principal moments of inertia in cm(-1)
A = 0.012911 B = 0.004483 C = 0.003689
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2168.218665 B = 6244.767577 C = 7587.322920
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.160 3.840
2 N -0.590 5.590
3 C -0.257 4.257
4 H 0.069 0.931
5 C 0.006 3.994
6 N -0.905 5.905
7 Si 0.902 3.098
8 H -0.286 1.286
9 H -0.290 1.290
10 H -0.280 1.280
11 C 0.170 3.830
12 H 0.066 0.934
13 C -0.135 4.135
14 C -0.131 4.131
15 C 0.116 3.884
16 N -0.596 5.596
17 C 0.587 3.413
18 O -0.517 6.517
19 C -0.254 4.254
20 S 0.280 5.720
21 C 0.002 3.998
22 N -0.459 5.459
23 C 0.037 3.963
24 C 0.349 3.651
25 F -0.177 7.177
26 F -0.192 7.192
27 C 0.080 3.920
28 H 0.030 0.970
29 H 0.000 1.000
30 H 0.046 0.954
31 H 0.254 0.746
32 H 0.067 0.933
33 H 0.061 0.939
34 H 0.064 0.936
35 H 0.073 0.927
36 H 0.090 0.910
37 H 0.069 0.931
38 H 0.211 0.789
39 H 0.129 0.871
40 H 0.072 0.928
41 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.871 -9.559 -4.088 11.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 N -0.312 5.312
3 C -0.386 4.386
4 H 0.087 0.913
5 C -0.193 4.193
6 N -0.550 5.550
7 Si 0.732 3.268
8 H -0.213 1.213
9 H -0.216 1.216
10 H -0.206 1.206
11 C 0.060 3.940
12 H 0.084 0.916
13 C -0.174 4.174
14 C -0.170 4.170
15 C -0.006 4.006
16 N -0.329 5.329
17 C 0.372 3.628
18 O -0.394 6.394
19 C -0.380 4.380
20 S 0.539 5.461
21 C -0.292 4.292
22 N -0.173 5.173
23 C -0.104 4.104
24 C 0.293 3.707
25 F -0.158 7.158
26 F -0.173 7.173
27 C -0.045 4.045
28 H 0.048 0.952
29 H 0.018 0.982
30 H 0.064 0.936
31 H 0.064 0.936
32 H 0.086 0.914
33 H 0.080 0.920
34 H 0.083 0.917
35 H 0.091 0.909
36 H 0.108 0.892
37 H 0.087 0.913
38 H 0.227 0.773
39 H 0.146 0.854
40 H 0.090 0.910
41 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 5.163 -9.220 -3.892 11.262
hybrid contribution -0.041 0.457 -0.278 0.536
sum 5.122 -8.764 -4.170 10.974
Atomic orbital electron populations
1.20830 0.82386 0.95727 0.99494 1.43944 1.01913 0.99839 1.85468
1.19182 0.97676 0.84999 1.36765 0.91337 1.24994 0.97565 0.98383
0.98310 1.70057 1.17522 1.27173 1.40218 0.86329 0.78386 0.83960
0.78161 1.21320 1.21556 1.20557 1.20633 0.96481 0.86257 0.90621
0.91592 1.22101 0.99903 0.95053 1.00354 1.21923 1.00985 0.97147
0.96916 1.21640 1.01707 0.94118 0.83136 1.48135 1.48150 1.19431
1.17223 1.16776 0.79251 0.85708 0.81082 1.90866 1.52333 1.18051
1.78123 1.25812 1.13526 0.99995 0.98652 1.85012 1.55580 1.00564
1.04975 1.28794 1.02877 0.99292 0.98229 1.65825 1.14646 0.99161
1.37624 1.20819 1.04461 0.97084 0.88024 1.19517 0.72596 0.81407
0.97215 1.93099 1.66137 1.68088 1.88459 1.93032 1.38987 1.93026
1.92295 1.23090 0.98192 0.81034 1.02212 0.95199 0.98190 0.93555
0.93603 0.91396 0.92049 0.91721 0.90892 0.89152 0.91320 0.77283
0.85391 0.90952 0.90208
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.58 7.89 59.85 0.47 4.06 16
2 N -0.59 -13.13 2.82 -173.35 -0.49 -13.62 16
3 C -0.26 -6.33 9.61 -15.06 -0.14 -6.48 16
4 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16
5 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16
6 N -0.91 -24.27 10.57 55.49 0.59 -23.68 16
7 Si 0.90 20.26 29.57 -169.99 -5.03 15.23 16
8 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16
9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
11 C 0.17 3.10 2.74 -67.82 -0.19 2.91 16
12 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16
13 C -0.13 -2.10 5.13 -26.70 -0.14 -2.23 16
14 C -0.13 -1.69 6.08 -26.61 -0.16 -1.86 16
15 C 0.12 1.61 6.42 -3.71 -0.02 1.59 16
16 N -0.60 -9.64 2.97 -174.30 -0.52 -10.16 16
17 C 0.59 10.22 7.06 -12.85 -0.09 10.13 16
18 O -0.52 -9.96 14.26 5.20 0.07 -9.89 16
19 C -0.25 -4.10 5.43 -37.10 -0.20 -4.30 16
20 S 0.28 3.98 20.25 -107.50 -2.18 1.80 16
21 C 0.00 0.03 12.22 51.75 0.63 0.66 16
22 N -0.46 -6.48 10.50 -11.53 -0.12 -6.60 16
23 C 0.04 0.57 6.25 -83.89 -0.52 0.04 16
24 C 0.35 4.96 5.22 36.00 0.19 5.15 16
25 F -0.18 -2.85 15.31 2.25 0.03 -2.81 16
26 F -0.19 -3.03 17.05 2.25 0.04 -2.99 16
27 C 0.08 1.38 5.44 -3.71 -0.02 1.36 16
28 H 0.03 0.73 7.38 -51.93 -0.38 0.34 16
29 H 0.00 -0.01 6.48 -51.93 -0.34 -0.34 16
30 H 0.05 1.14 7.21 -51.93 -0.37 0.76 16
31 H 0.25 6.68 8.31 -40.82 -0.34 6.35 16
32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
33 H 0.06 0.96 6.73 -51.93 -0.35 0.61 16
34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
36 H 0.09 1.26 7.03 -51.93 -0.37 0.90 16
37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.21 1.75 8.06 -52.48 -0.42 1.33 16
39 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16
40 H 0.07 1.30 7.50 -51.93 -0.39 0.91 16
41 H 0.08 1.44 3.94 -31.49 -0.12 1.31 16
LS Contribution 348.25 15.07 5.25 5.25
Total: -1.00 -29.88 348.25 -7.45 -37.32
By element:
Atomic # 1 Polarization: 3.87 SS G_CDS: -4.81 Total: -0.94 kcal
Atomic # 6 Polarization: 11.38 SS G_CDS: -0.29 Total: 11.09 kcal
Atomic # 7 Polarization: -53.53 SS G_CDS: -0.54 Total: -54.07 kcal
Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal
Atomic # 9 Polarization: -5.87 SS G_CDS: 0.07 Total: -5.80 kcal
Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal
Atomic # 16 Polarization: 3.98 SS G_CDS: -2.18 Total: 1.80 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -29.88 -7.45 -37.32 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027486488.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.137 kcal
(2) G-P(sol) polarization free energy of solvation -29.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.462 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds