Wall clock time and date at job start Wed Apr 1 2020 03:09:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36938 * 119.99583 * 2 1
4 4 H 1.08005 * 119.99708 * 158.32571 * 3 2 1
5 5 C 1.38811 * 120.00081 * 338.31418 * 3 2 1
6 6 N 1.31613 * 120.00263 * 348.17403 * 5 3 2
7 7 Si 1.86798 * 119.99732 * 168.17389 * 5 3 2
8 8 H 1.48498 * 109.47199 * 84.99123 * 7 5 3
9 9 H 1.48500 * 109.47114 * 204.98999 * 7 5 3
10 10 H 1.48503 * 109.47346 * 324.99010 * 7 5 3
11 11 C 1.46494 * 119.99797 * 180.26708 * 2 1 3
12 12 H 1.09001 * 109.49666 * 179.65997 * 11 2 1
13 13 C 1.53036 * 109.50269 * 299.72547 * 11 2 1
14 14 C 1.53033 * 109.54262 * 181.31751 * 13 11 2
15 15 C 1.53199 * 109.31327 * 298.63733 * 14 13 11
16 16 N 1.46928 * 108.77379 * 54.63130 * 15 14 13
17 17 C 1.34779 * 120.62813 * 126.36778 * 16 15 14
18 18 O 1.21686 * 119.99920 * 4.72455 * 17 16 15
19 19 C 1.46680 * 119.99920 * 184.71602 * 17 16 15
20 20 S 1.76213 * 126.12719 * 43.76292 * 19 17 16
21 21 C 1.70953 * 90.31253 * 179.97438 * 20 19 17
22 22 N 1.29426 * 110.39203 * 0.02562 * 21 20 19
23 23 C 1.30943 * 117.36577 * 359.73069 * 22 21 20
24 24 C 1.50695 * 122.90696 * 180.30765 * 23 22 21
25 25 F 1.39900 * 109.46834 * 120.19393 * 24 23 22
26 26 F 1.39904 * 109.46867 * 240.18981 * 24 23 22
27 27 C 1.46926 * 118.74096 * 306.39521 * 16 15 14
28 28 H 1.09002 * 109.47396 * 84.93026 * 1 2 3
29 29 H 1.09004 * 109.47213 * 204.92791 * 1 2 3
30 30 H 1.09002 * 109.47585 * 324.92650 * 1 2 3
31 31 H 0.97001 * 120.00523 * 179.97438 * 6 5 3
32 32 H 1.09005 * 109.45834 * 301.34205 * 13 11 2
33 33 H 1.09005 * 109.45986 * 61.29294 * 13 11 2
34 34 H 1.08999 * 109.49704 * 58.58658 * 14 13 11
35 35 H 1.08994 * 109.50123 * 178.68346 * 14 13 11
36 36 H 1.09003 * 109.58464 * 174.42056 * 15 14 13
37 37 H 1.08995 * 109.58492 * 294.70668 * 15 14 13
38 38 H 1.08007 * 124.80181 * 179.97438 * 21 20 19
39 39 H 1.08998 * 109.47467 * 0.19192 * 24 23 22
40 40 H 1.09005 * 109.58501 * 293.82147 * 27 16 15
41 41 H 1.08996 * 109.58890 * 173.39856 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1860 0.0000
4 1 3.1724 1.2191 0.3455
5 6 1.5292 2.3455 -0.4442
6 7 0.3779 2.2746 -1.0780
7 14 2.3283 4.0067 -0.1424
8 1 3.3090 4.2876 -1.2216
9 1 1.2852 5.0637 -0.1342
10 1 3.0261 3.9896 1.1684
11 6 2.1974 -1.2687 -0.0059
12 1 3.2692 -1.0700 -0.0111
13 6 1.8334 -2.0746 1.2431
14 6 2.6228 -3.3856 1.2544
15 6 2.2497 -4.2124 0.0198
16 7 2.4604 -3.3914 -1.1804
17 6 3.2275 -3.8405 -2.1935
18 8 3.6828 -4.9684 -2.1582
19 6 3.5133 -2.9697 -3.3387
20 16 3.9589 -1.2665 -3.2631
21 6 4.0588 -1.2073 -4.9687
22 7 3.7783 -2.3639 -5.4773
23 6 3.4868 -3.3325 -4.6457
24 6 3.1481 -4.7285 -5.1012
25 9 4.0664 -5.6324 -4.5563
26 9 1.8581 -5.0588 -4.6722
27 6 1.8196 -2.0714 -1.2548
28 1 -0.3634 0.0908 -1.0236
29 1 -0.3634 -0.9320 0.4331
30 1 -0.3634 0.8410 0.5905
31 1 -0.0559 3.0849 -1.3881
32 1 2.0786 -1.4953 2.1333
33 1 0.7656 -2.2937 1.2355
34 1 3.6906 -3.1675 1.2371
35 1 2.3805 -3.9484 2.1559
36 1 2.8801 -5.1003 -0.0294
37 1 1.2031 -4.5102 0.0821
38 1 4.3185 -0.3288 -5.5409
39 1 3.1927 -4.7766 -6.1892
40 1 0.7372 -2.1926 -1.2976
41 1 2.1661 -1.5466 -2.1451
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027486488.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:35
Heat of formation + Delta-G solvation = -67.207259 kcal
Electronic energy + Delta-G solvation = -29496.453099 eV
Core-core repulsion = 25174.693719 eV
Total energy + Delta-G solvation = -4321.759380 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.106 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-50.07070 -48.07193 -41.65052 -40.65634 -38.93600 -36.65697 -34.10490 -33.33601
-32.24921 -30.43744 -29.13194 -27.99772 -26.46248 -25.73525 -25.27263 -23.56693
-22.12290 -20.80512 -20.59855 -19.68266 -18.79416 -18.49624 -18.32371 -17.92449
-17.47769 -17.05613 -16.81978 -16.25764 -15.85202 -15.67921 -15.58486 -15.22786
-15.12129 -14.91786 -14.72377 -14.44163 -14.40839 -14.11935 -13.91585 -13.77150
-13.58023 -13.32389 -12.95588 -12.76259 -12.49581 -12.24425 -12.16577 -12.13178
-12.09034 -11.88373 -11.59462 -11.49165 -11.38166 -10.98445 -10.65447 -10.56061
-10.20946 -9.82305 -8.74266 -7.76892 -5.24987 -0.99008 -0.13338 0.38031
1.11780 1.49860 1.53584 1.57907 1.60193 1.82753 2.26115 2.54205
3.06640 3.12461 3.37451 3.46613 3.67079 3.77121 3.84514 3.89224
3.98036 4.08979 4.10824 4.21097 4.33138 4.51074 4.57712 4.61269
4.76706 4.81737 4.95534 4.99464 5.08109 5.30373 5.36816 5.41288
5.52991 5.69425 5.78164 6.06911 6.21696 6.37025 6.81304 7.19782
7.89851 8.33879 9.25227
Molecular weight = 345.11amu
Principal moments of inertia in cm(-1)
A = 0.012911 B = 0.004483 C = 0.003689
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2168.218665 B = 6244.767577 C = 7587.322920
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.177 3.823
2 N -0.601 5.601
3 C -0.255 4.255
4 H 0.072 0.928
5 C -0.042 4.042
6 N -0.934 5.934
7 Si 0.957 3.043
8 H -0.281 1.281
9 H -0.299 1.299
10 H -0.275 1.275
11 C 0.170 3.830
12 H 0.059 0.941
13 C -0.127 4.127
14 C -0.118 4.118
15 C 0.111 3.889
16 N -0.594 5.594
17 C 0.586 3.414
18 O -0.541 6.541
19 C -0.284 4.284
20 S 0.264 5.736
21 C 0.027 3.973
22 N -0.468 5.468
23 C 0.036 3.964
24 C 0.342 3.658
25 F -0.190 7.190
26 F -0.204 7.204
27 C 0.092 3.908
28 H 0.005 0.995
29 H 0.029 0.971
30 H 0.018 0.982
31 H 0.247 0.753
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.062 0.938
35 H 0.104 0.896
36 H 0.091 0.909
37 H 0.082 0.918
38 H 0.252 0.748
39 H 0.169 0.831
40 H 0.065 0.935
41 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.708 -9.851 -4.203 12.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 N -0.324 5.324
3 C -0.385 4.385
4 H 0.089 0.911
5 C -0.237 4.237
6 N -0.581 5.581
7 Si 0.786 3.214
8 H -0.207 1.207
9 H -0.226 1.226
10 H -0.201 1.201
11 C 0.062 3.938
12 H 0.077 0.923
13 C -0.166 4.166
14 C -0.157 4.157
15 C -0.010 4.010
16 N -0.327 5.327
17 C 0.371 3.629
18 O -0.421 6.421
19 C -0.410 4.410
20 S 0.523 5.477
21 C -0.267 4.267
22 N -0.181 5.181
23 C -0.106 4.106
24 C 0.286 3.714
25 F -0.171 7.171
26 F -0.185 7.185
27 C -0.034 4.034
28 H 0.023 0.977
29 H 0.047 0.953
30 H 0.036 0.964
31 H 0.056 0.944
32 H 0.082 0.918
33 H 0.082 0.918
34 H 0.081 0.919
35 H 0.123 0.877
36 H 0.109 0.891
37 H 0.100 0.900
38 H 0.267 0.733
39 H 0.186 0.814
40 H 0.084 0.916
41 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 6.022 -9.542 -3.980 11.964
hybrid contribution -0.260 0.523 -0.270 0.643
sum 5.761 -9.019 -4.250 11.515
Atomic orbital electron populations
1.20530 0.82708 0.95897 0.97636 1.44072 1.01922 1.00720 1.85640
1.19452 0.97726 0.86003 1.35369 0.91071 1.25597 0.98206 1.01082
0.98860 1.70209 1.18841 1.27213 1.41799 0.85457 0.77335 0.80444
0.78207 1.20701 1.22605 1.20061 1.20739 0.95630 0.85182 0.92291
0.92266 1.21981 1.00427 0.95836 0.98379 1.21854 1.00310 0.95767
0.97755 1.21849 1.02641 0.94001 0.82541 1.48154 1.47653 1.19048
1.17816 1.16954 0.78884 0.85574 0.81462 1.90841 1.53340 1.19107
1.78780 1.25781 1.15602 1.00864 0.98714 1.85040 1.56019 0.99716
1.06961 1.29512 1.00088 0.99833 0.97243 1.65899 1.15529 0.99462
1.37160 1.21107 1.03653 0.97823 0.87977 1.20015 0.71698 0.80617
0.99074 1.93066 1.66611 1.68526 1.88896 1.93003 1.39808 1.93073
1.92609 1.22775 0.97642 0.81516 1.01441 0.97694 0.95304 0.96367
0.94372 0.91848 0.91823 0.91945 0.87741 0.89077 0.89950 0.73250
0.81374 0.91640 0.90835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 7.97 7.89 127.77 1.01 8.97 16
2 N -0.60 -26.61 2.82 -702.35 -1.98 -28.59 16
3 C -0.26 -12.53 9.61 84.03 0.81 -11.72 16
4 H 0.07 3.40 7.81 -2.91 -0.02 3.37 16
5 C -0.04 -2.14 5.13 84.86 0.44 -1.70 16
6 N -0.93 -50.86 10.57 21.65 0.23 -50.63 16
7 Si 0.96 41.57 29.57 68.60 2.03 43.60 16
8 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
9 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16
10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16
11 C 0.17 6.06 2.74 45.07 0.12 6.18 16
12 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16
13 C -0.13 -3.72 5.13 30.62 0.16 -3.56 16
14 C -0.12 -2.77 6.08 30.67 0.19 -2.58 16
15 C 0.11 2.88 6.42 86.36 0.55 3.43 16
16 N -0.59 -18.74 2.97 -823.60 -2.45 -21.18 16
17 C 0.59 20.17 7.06 86.45 0.61 20.78 16
18 O -0.54 -20.79 14.26 -4.30 -0.06 -20.85 16
19 C -0.28 -9.02 5.43 23.88 0.13 -8.89 16
20 S 0.26 7.24 20.25 -56.49 -1.14 6.10 16
21 C 0.03 0.61 12.22 130.60 1.60 2.20 16
22 N -0.47 -12.23 10.50 -190.40 -2.00 -14.23 16
23 C 0.04 1.05 6.25 42.09 0.26 1.32 16
24 C 0.34 9.33 5.22 71.23 0.37 9.70 16
25 F -0.19 -6.01 15.31 44.97 0.69 -5.32 16
26 F -0.20 -6.29 17.05 44.97 0.77 -5.52 16
27 C 0.09 3.12 5.44 86.36 0.47 3.59 16
28 H 0.00 0.24 7.38 -2.39 -0.02 0.22 16
29 H 0.03 1.10 6.48 -2.38 -0.02 1.08 16
30 H 0.02 0.89 7.21 -2.39 -0.02 0.87 16
31 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16
32 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16
33 H 0.06 1.85 6.73 -2.38 -0.02 1.83 16
34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.09 2.41 7.03 -2.39 -0.02 2.39 16
37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
38 H 0.25 3.25 8.06 -2.91 -0.02 3.23 16
39 H 0.17 3.15 8.14 -2.39 -0.02 3.13 16
40 H 0.07 2.32 7.50 -2.38 -0.02 2.30 16
41 H 0.07 2.64 3.94 -15.39 -0.06 2.58 16
Total: -1.00 -64.59 348.25 3.82 -60.77
By element:
Atomic # 1 Polarization: 7.12 SS G_CDS: 1.03 Total: 8.14 kcal
Atomic # 6 Polarization: 21.00 SS G_CDS: 6.71 Total: 27.71 kcal
Atomic # 7 Polarization: -108.44 SS G_CDS: -6.20 Total: -114.63 kcal
Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal
Atomic # 9 Polarization: -12.30 SS G_CDS: 1.45 Total: -10.85 kcal
Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal
Atomic # 16 Polarization: 7.24 SS G_CDS: -1.14 Total: 6.10 kcal
Total: -64.59 3.82 -60.77 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027486488.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.434 kcal
(2) G-P(sol) polarization free energy of solvation -64.593 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds