Wall clock time and date at job start Wed Apr 1 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.52278 * 2 1 4 4 C 1.53187 * 109.49837 * 239.91752 * 2 1 3 5 5 N 1.46932 * 108.77478 * 185.41276 * 4 2 1 6 6 C 1.34770 * 120.63299 * 233.58364 * 5 4 2 7 7 O 1.21692 * 120.00100 * 355.64634 * 6 5 4 8 8 C 1.46680 * 120.00594 * 175.64396 * 6 5 4 9 9 S 1.76215 * 126.12841 * 49.84840 * 8 6 5 10 10 C 1.70952 * 90.31242 * 179.97438 * 9 8 6 11 11 N 1.29426 * 110.39333 * 0.34924 * 10 9 8 12 12 C 1.30947 * 117.35935 * 359.72333 * 11 10 9 13 13 C 1.50700 * 122.90121 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.47100 * 119.96364 * 13 12 11 15 15 F 1.39898 * 109.47403 * 239.96411 * 13 12 11 16 16 C 1.46926 * 118.73716 * 53.61177 * 5 4 2 17 17 C 1.53198 * 108.77352 * 306.38722 * 16 5 4 18 18 C 1.53038 * 109.30928 * 54.64019 * 17 16 5 19 19 H 1.09003 * 109.45504 * 178.63023 * 18 17 16 20 20 N 1.46495 * 109.46189 * 58.65746 * 18 17 16 21 21 C 1.36939 * 120.00208 * 84.99982 * 20 18 17 22 22 H 1.07998 * 119.99732 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99866 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00207 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99931 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47005 * 179.97438 * 25 23 21 27 27 H 1.48493 * 109.47075 * 300.00201 * 25 23 21 28 28 H 1.48500 * 109.46994 * 60.00116 * 25 23 21 29 29 H 1.08990 * 109.47078 * 299.92130 * 1 2 3 30 30 H 1.08998 * 109.46732 * 59.92435 * 1 2 3 31 31 H 1.09003 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.58956 * 65.62464 * 4 2 1 33 33 H 1.09005 * 109.58625 * 305.19847 * 4 2 1 34 34 H 1.07997 * 124.80402 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47144 * 359.96710 * 13 12 11 36 36 H 1.09003 * 109.58531 * 186.60493 * 16 5 4 37 37 H 1.08998 * 109.59277 * 66.17659 * 16 5 4 38 38 H 1.08999 * 109.49772 * 294.68816 * 17 16 5 39 39 H 1.08998 * 109.49569 * 174.59161 * 17 16 5 40 40 H 0.97002 * 119.99706 * 264.99699 * 20 18 17 41 41 H 0.97002 * 120.00470 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3865 -2.1781 7 8 3.7707 0.0330 -3.2001 8 6 5.7417 -0.4103 -2.0443 9 16 6.7157 -1.7860 -1.5305 10 6 8.1386 -0.8536 -1.6993 11 7 7.8483 0.3453 -2.0911 12 6 6.5841 0.6249 -2.2871 13 6 6.1065 1.9794 -2.7435 14 9 5.4314 1.8496 -3.9619 15 9 5.2400 2.5157 -1.7850 16 6 4.1053 -1.4267 0.0309 17 6 3.5709 -0.6949 1.2661 18 6 2.0408 -0.7231 1.2484 19 1 1.6582 -0.2242 2.1388 20 7 1.5784 -2.1130 1.2310 21 6 1.4469 -2.8056 2.4049 22 1 1.6844 -2.3273 3.3436 23 6 1.0082 -4.1225 2.3884 24 7 0.7182 -4.7053 1.2444 25 14 0.8294 -5.0676 3.9897 26 1 0.3479 -6.4426 3.7019 27 1 2.1458 -5.1365 4.6734 28 1 -0.1483 -4.3748 4.8668 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7638 -0.1580 -2.1388 33 1 1.6053 -1.7217 -1.2979 34 1 9.1378 -1.2125 -1.5015 35 1 6.9623 2.6424 -2.8711 36 1 5.1897 -1.3245 -0.0136 37 1 3.8376 -2.4818 0.0869 38 1 3.9159 0.3390 1.2541 39 1 3.9335 -1.1895 2.1672 40 1 1.3654 -2.5427 0.3878 41 1 0.4113 -5.6254 1.2328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036102708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:14 Heat of formation + Delta-G solvation = -65.420491 kcal Electronic energy + Delta-G solvation = -29379.485380 eV Core-core repulsion = 25057.803480 eV Total energy + Delta-G solvation = -4321.681900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.02774 -47.01064 -40.57866 -39.63308 -37.69350 -34.40236 -32.98362 -31.61288 -31.38789 -29.25759 -28.39791 -26.17001 -25.15095 -24.78672 -23.55390 -21.78107 -21.54283 -19.75332 -19.05077 -18.27640 -17.48902 -17.34132 -17.25821 -16.66682 -16.45213 -15.88642 -15.27524 -14.90790 -14.78945 -14.37256 -14.25113 -14.03634 -13.81744 -13.57841 -13.36414 -13.34840 -13.05690 -12.86146 -12.58480 -12.41695 -12.31522 -11.70825 -11.47390 -11.27276 -11.21551 -10.94035 -10.85302 -10.64672 -10.53756 -10.30897 -10.25982 -9.98281 -9.90458 -9.61571 -9.59625 -9.40218 -8.96072 -8.37120 -7.03213 -5.83472 -3.12344 -0.05620 0.71540 1.17966 2.03984 2.73391 3.10154 3.17833 3.38517 3.44147 3.44801 3.94597 4.21687 4.45520 4.53072 4.53433 4.88412 5.00390 5.06620 5.22779 5.31266 5.34431 5.43676 5.50945 5.66160 5.74538 5.86225 5.98612 6.01076 6.15632 6.26326 6.32648 6.46091 6.52763 6.62237 6.69378 6.85309 6.94231 7.07164 7.46839 7.64090 8.09965 8.34813 9.46539 10.02372 10.37771 11.38739 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.003732 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.234629 B = 7500.331329 C = 8508.109752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.581 3.419 7 O -0.513 6.513 8 C -0.231 4.231 9 S 0.236 5.764 10 C 0.008 3.992 11 N -0.454 5.454 12 C 0.034 3.966 13 C 0.348 3.652 14 F -0.176 7.176 15 F -0.190 7.190 16 C 0.105 3.895 17 C -0.148 4.148 18 C 0.179 3.821 19 H 0.054 0.946 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.292 1.292 27 H -0.287 1.287 28 H -0.287 1.287 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.212 0.788 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 9.561 -5.848 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.086 0.914 4 C 0.000 4.000 5 N -0.318 5.318 6 C 0.364 3.636 7 O -0.390 6.390 8 C -0.356 4.356 9 S 0.493 5.507 10 C -0.287 4.287 11 N -0.166 5.166 12 C -0.105 4.105 13 C 0.291 3.709 14 F -0.157 7.157 15 F -0.171 7.171 16 C -0.018 4.018 17 C -0.189 4.189 18 C 0.068 3.932 19 H 0.071 0.929 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.214 1.214 28 H -0.213 1.213 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.228 0.772 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.821 8.988 -5.978 17.537 hybrid contribution -0.237 -0.096 0.539 0.597 sum 13.584 8.892 -5.439 17.123 Atomic orbital electron populations 1.21658 0.93952 1.03247 1.00590 1.21723 0.96693 0.99004 0.95489 0.91378 1.21754 0.77171 1.02004 0.99054 1.48003 1.07479 1.58747 1.17618 1.16750 0.83493 0.79165 0.84145 1.90887 1.73317 1.46795 1.28032 1.25823 1.00396 0.98817 1.10601 1.84493 0.96786 1.13507 1.55907 1.28718 1.05146 0.92359 1.02473 1.65804 1.17316 1.18919 1.14604 1.20841 0.88067 0.97280 1.04342 1.19544 0.87814 0.89748 0.73795 1.93116 1.82394 1.96582 1.43596 1.93049 1.72953 1.86572 1.64539 1.22035 0.96142 0.99478 0.84142 1.22521 1.00683 0.98706 0.97021 1.20216 0.90546 0.87423 0.94997 0.92851 1.42474 1.79000 1.07666 1.06953 1.19171 1.37458 0.93886 0.86532 0.91279 1.24693 1.02149 0.97167 0.96579 1.69634 1.51522 1.13165 1.23720 0.86319 0.77764 0.79231 0.83141 1.21791 1.21365 1.21345 0.92689 0.93649 0.90982 0.89425 0.90114 0.77196 0.85268 0.91825 0.88887 0.93124 0.90479 0.78106 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.05 37.16 0.34 -1.83 16 2 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 2.05 5.41 -3.71 -0.02 2.03 16 5 N -0.59 -9.69 2.97 -174.30 -0.52 -10.21 16 6 C 0.58 9.86 6.96 -12.86 -0.09 9.77 16 7 O -0.51 -10.04 14.61 5.20 0.08 -9.97 16 8 C -0.23 -3.29 5.31 -37.10 -0.20 -3.48 16 9 S 0.24 2.45 20.43 -107.50 -2.20 0.26 16 10 C 0.01 0.07 12.22 51.75 0.63 0.71 16 11 N -0.45 -5.21 10.50 -11.54 -0.12 -5.33 16 12 C 0.03 0.45 6.25 -83.89 -0.52 -0.07 16 13 C 0.35 4.48 5.28 36.01 0.19 4.67 16 14 F -0.18 -2.70 15.48 2.25 0.03 -2.66 16 15 F -0.19 -2.76 17.04 2.25 0.04 -2.72 16 16 C 0.10 1.66 5.73 -3.71 -0.02 1.64 16 17 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 18 C 0.18 3.26 2.53 -67.89 -0.17 3.08 16 19 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 20 N -0.72 -16.00 3.64 -53.39 -0.19 -16.19 16 21 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 25 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 32 H 0.09 1.48 7.03 -51.93 -0.37 1.12 16 33 H 0.08 1.47 6.64 -51.93 -0.34 1.13 16 34 H 0.21 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.87 4.26 -36.49 -0.16 0.72 16 37 H 0.09 1.67 7.74 -51.93 -0.40 1.27 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.38 9.16 5.93 -40.82 -0.24 8.92 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -31.06 351.47 -7.21 -38.28 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.82 Total: 7.33 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.51 Total: 5.35 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.11 Total: -57.41 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.07 Total: -5.39 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.20 Total: 0.26 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.06 -7.21 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.143 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds