Wall clock time and date at job start Wed Apr 1 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.52278 * 2 1 4 4 C 1.53187 * 109.49837 * 239.91752 * 2 1 3 5 5 N 1.46932 * 108.77478 * 185.41276 * 4 2 1 6 6 C 1.34770 * 120.63299 * 233.58364 * 5 4 2 7 7 O 1.21692 * 120.00100 * 355.64634 * 6 5 4 8 8 C 1.46680 * 120.00594 * 175.64396 * 6 5 4 9 9 S 1.76215 * 126.12841 * 49.84840 * 8 6 5 10 10 C 1.70952 * 90.31242 * 179.97438 * 9 8 6 11 11 N 1.29426 * 110.39333 * 0.34924 * 10 9 8 12 12 C 1.30947 * 117.35935 * 359.72333 * 11 10 9 13 13 C 1.50700 * 122.90121 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.47100 * 119.96364 * 13 12 11 15 15 F 1.39898 * 109.47403 * 239.96411 * 13 12 11 16 16 C 1.46926 * 118.73716 * 53.61177 * 5 4 2 17 17 C 1.53198 * 108.77352 * 306.38722 * 16 5 4 18 18 C 1.53038 * 109.30928 * 54.64019 * 17 16 5 19 19 H 1.09003 * 109.45504 * 178.63023 * 18 17 16 20 20 N 1.46495 * 109.46189 * 58.65746 * 18 17 16 21 21 C 1.36939 * 120.00208 * 84.99982 * 20 18 17 22 22 H 1.07998 * 119.99732 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99866 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00207 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99931 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47005 * 179.97438 * 25 23 21 27 27 H 1.48493 * 109.47075 * 300.00201 * 25 23 21 28 28 H 1.48500 * 109.46994 * 60.00116 * 25 23 21 29 29 H 1.08990 * 109.47078 * 299.92130 * 1 2 3 30 30 H 1.08998 * 109.46732 * 59.92435 * 1 2 3 31 31 H 1.09003 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.58956 * 65.62464 * 4 2 1 33 33 H 1.09005 * 109.58625 * 305.19847 * 4 2 1 34 34 H 1.07997 * 124.80402 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47144 * 359.96710 * 13 12 11 36 36 H 1.09003 * 109.58531 * 186.60493 * 16 5 4 37 37 H 1.08998 * 109.59277 * 66.17659 * 16 5 4 38 38 H 1.08999 * 109.49772 * 294.68816 * 17 16 5 39 39 H 1.08998 * 109.49569 * 174.59161 * 17 16 5 40 40 H 0.97002 * 119.99706 * 264.99699 * 20 18 17 41 41 H 0.97002 * 120.00470 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3865 -2.1781 7 8 3.7707 0.0330 -3.2001 8 6 5.7417 -0.4103 -2.0443 9 16 6.7157 -1.7860 -1.5305 10 6 8.1386 -0.8536 -1.6993 11 7 7.8483 0.3453 -2.0911 12 6 6.5841 0.6249 -2.2871 13 6 6.1065 1.9794 -2.7435 14 9 5.4314 1.8496 -3.9619 15 9 5.2400 2.5157 -1.7850 16 6 4.1053 -1.4267 0.0309 17 6 3.5709 -0.6949 1.2661 18 6 2.0408 -0.7231 1.2484 19 1 1.6582 -0.2242 2.1388 20 7 1.5784 -2.1130 1.2310 21 6 1.4469 -2.8056 2.4049 22 1 1.6844 -2.3273 3.3436 23 6 1.0082 -4.1225 2.3884 24 7 0.7182 -4.7053 1.2444 25 14 0.8294 -5.0676 3.9897 26 1 0.3479 -6.4426 3.7019 27 1 2.1458 -5.1365 4.6734 28 1 -0.1483 -4.3748 4.8668 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7638 -0.1580 -2.1388 33 1 1.6053 -1.7217 -1.2979 34 1 9.1378 -1.2125 -1.5015 35 1 6.9623 2.6424 -2.8711 36 1 5.1897 -1.3245 -0.0136 37 1 3.8376 -2.4818 0.0869 38 1 3.9159 0.3390 1.2541 39 1 3.9335 -1.1895 2.1672 40 1 1.3654 -2.5427 0.3878 41 1 0.4113 -5.6254 1.2328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036102708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:14 Heat of formation + Delta-G solvation = -85.121191 kcal Electronic energy + Delta-G solvation = -29380.339667 eV Core-core repulsion = 25057.803480 eV Total energy + Delta-G solvation = -4322.536187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.07358 -48.08131 -41.72353 -40.73143 -39.09668 -35.96497 -34.58716 -33.09454 -32.45116 -30.97121 -29.45317 -27.49639 -26.51188 -25.76403 -25.31190 -23.15885 -22.70085 -20.74544 -20.25203 -19.54643 -19.26858 -18.52752 -18.34083 -17.87464 -17.46328 -17.02181 -16.62171 -16.27501 -16.06749 -15.77276 -15.57971 -15.38459 -14.97544 -14.89175 -14.79928 -14.44721 -14.36073 -14.20490 -13.95073 -13.67584 -13.39629 -13.11041 -12.99659 -12.84345 -12.71296 -12.47698 -12.18721 -12.15482 -12.04681 -11.97628 -11.59927 -11.42434 -11.19336 -10.98927 -10.89558 -10.61227 -10.24884 -9.75441 -8.92237 -7.86666 -5.13353 -0.96377 -0.19268 0.35656 1.14121 1.51841 1.52092 1.53330 1.58871 1.85384 2.26796 2.61595 3.08289 3.14817 3.46724 3.49052 3.72246 3.79742 3.83857 3.88596 3.94281 4.03667 4.09702 4.24014 4.32258 4.46427 4.55161 4.59274 4.65084 4.78687 4.88892 4.98330 5.10743 5.15355 5.21392 5.25574 5.43148 5.55551 5.61949 6.14250 6.24419 6.34422 6.81058 7.42635 8.16971 8.41801 9.36192 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.003732 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.234629 B = 7500.331329 C = 8508.109752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.126 3.874 5 N -0.589 5.589 6 C 0.581 3.419 7 O -0.549 6.549 8 C -0.278 4.278 9 S 0.256 5.744 10 C 0.041 3.959 11 N -0.468 5.468 12 C 0.040 3.960 13 C 0.336 3.664 14 F -0.194 7.194 15 F -0.202 7.202 16 C 0.112 3.888 17 C -0.141 4.141 18 C 0.174 3.826 19 H 0.051 0.949 20 N -0.723 5.723 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.069 4.069 24 N -0.968 5.968 25 Si 0.962 3.038 26 H -0.303 1.303 27 H -0.278 1.278 28 H -0.284 1.284 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.261 0.739 35 H 0.170 0.830 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.374 0.626 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.514 10.510 -4.900 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.101 0.899 4 C 0.004 3.996 5 N -0.320 5.320 6 C 0.367 3.633 7 O -0.428 6.428 8 C -0.404 4.404 9 S 0.514 5.486 10 C -0.253 4.253 11 N -0.181 5.181 12 C -0.100 4.100 13 C 0.280 3.720 14 F -0.176 7.176 15 F -0.184 7.184 16 C -0.010 4.010 17 C -0.181 4.181 18 C 0.065 3.935 19 H 0.069 0.931 20 N -0.364 5.364 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.261 4.261 24 N -0.619 5.619 25 Si 0.793 3.207 26 H -0.230 1.230 27 H -0.204 1.204 28 H -0.210 1.210 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.276 0.724 35 H 0.187 0.813 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.208 0.792 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.489 9.969 -4.994 19.905 hybrid contribution -0.939 -0.339 0.224 1.023 sum 15.550 9.631 -4.770 18.902 Atomic orbital electron populations 1.21589 0.93616 1.01708 1.01895 1.21640 0.96911 0.99206 0.94135 0.89917 1.21610 0.77877 1.00842 0.99293 1.48027 1.07227 1.58836 1.17906 1.17084 0.84793 0.78084 0.83331 1.90853 1.74522 1.48284 1.29173 1.25606 0.99198 1.01290 1.14285 1.84440 0.96783 1.11977 1.55378 1.29599 1.06320 0.90825 0.98587 1.65898 1.16029 1.20049 1.16091 1.20984 0.88688 0.97102 1.03220 1.20107 0.88328 0.90759 0.72783 1.93074 1.82968 1.96740 1.44774 1.93012 1.73605 1.86759 1.64993 1.21949 0.97611 0.97797 0.83668 1.22396 0.98780 0.99881 0.97087 1.20408 0.91897 0.85391 0.95804 0.93051 1.42564 1.79108 1.09086 1.05691 1.19520 1.35023 0.93857 0.87623 0.90650 1.25345 1.03416 0.98365 0.98976 1.69790 1.53678 1.12913 1.25508 0.85379 0.77857 0.77369 0.80120 1.22960 1.20434 1.21048 0.92016 0.91719 0.93834 0.89653 0.92183 0.72374 0.81293 0.89346 0.91414 0.91219 0.90726 0.79242 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.05 71.98 0.65 -3.45 16 2 C -0.10 -3.19 2.67 -10.72 -0.03 -3.22 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.13 4.34 5.41 86.36 0.47 4.81 16 5 N -0.59 -19.51 2.97 -823.60 -2.45 -21.96 16 6 C 0.58 19.75 6.96 86.45 0.60 20.35 16 7 O -0.55 -21.94 14.61 -4.32 -0.06 -22.01 16 8 C -0.28 -7.59 5.31 23.88 0.13 -7.46 16 9 S 0.26 4.69 20.43 -56.49 -1.15 3.54 16 10 C 0.04 0.55 12.22 130.60 1.60 2.14 16 11 N -0.47 -9.16 10.50 -190.41 -2.00 -11.16 16 12 C 0.04 1.00 6.25 42.09 0.26 1.26 16 13 C 0.34 8.21 5.28 71.24 0.38 8.58 16 14 F -0.19 -5.93 15.48 44.97 0.70 -5.23 16 15 F -0.20 -5.69 17.04 44.97 0.77 -4.92 16 16 C 0.11 3.48 5.73 86.36 0.49 3.98 16 17 C -0.14 -4.41 5.78 30.67 0.18 -4.23 16 18 C 0.17 6.24 2.53 45.02 0.11 6.35 16 19 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 20 N -0.72 -32.58 3.64 -322.82 -1.17 -33.75 16 21 C -0.23 -11.55 9.93 84.03 0.83 -10.72 16 22 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 23 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.97 -56.20 13.06 21.65 0.28 -55.92 16 25 Si 0.96 43.99 29.55 68.60 2.03 46.01 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.62 7.54 -2.39 -0.02 1.60 16 32 H 0.09 2.97 7.03 -2.39 -0.02 2.96 16 33 H 0.06 2.31 6.64 -2.38 -0.02 2.30 16 34 H 0.26 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.17 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.09 2.28 4.26 -12.20 -0.05 2.23 16 37 H 0.07 2.47 7.74 -2.39 -0.02 2.45 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.37 18.45 5.93 -92.71 -0.55 17.90 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -68.82 351.47 3.57 -65.25 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.50 Total: 24.97 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.14 Total: 15.18 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -5.34 Total: -122.79 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.06 Total: -22.01 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 1.46 Total: -10.15 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.15 Total: 3.54 kcal Total: -68.82 3.57 -65.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.876 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds