Wall clock time and date at job start Wed Apr 1 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49818 * 2 1 4 4 C 1.53192 * 109.49963 * 239.94374 * 2 1 3 5 5 N 1.46921 * 108.77698 * 185.41789 * 4 2 1 6 6 C 1.34781 * 120.62772 * 233.62814 * 5 4 2 7 7 O 1.21691 * 120.00009 * 355.64159 * 6 5 4 8 8 C 1.46676 * 120.00143 * 175.64376 * 6 5 4 9 9 S 1.76218 * 126.12812 * 49.66331 * 8 6 5 10 10 C 1.70955 * 90.31274 * 179.97438 * 9 8 6 11 11 N 1.29427 * 110.39069 * 0.34710 * 10 9 8 12 12 C 1.30943 * 117.36622 * 359.72226 * 11 10 9 13 13 C 1.50699 * 122.90664 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.47003 * 120.04243 * 13 12 11 15 15 F 1.39888 * 109.47305 * 240.04276 * 13 12 11 16 16 C 1.46922 * 118.74266 * 53.60215 * 5 4 2 17 17 C 1.53194 * 108.77233 * 306.39424 * 16 5 4 18 18 C 1.53031 * 109.49762 * 120.06929 * 2 1 3 19 19 H 1.08995 * 109.43449 * 61.28065 * 18 2 1 20 20 N 1.46495 * 109.48792 * 301.32181 * 18 2 1 21 21 C 1.36937 * 120.00610 * 154.91483 * 20 18 2 22 22 H 1.07999 * 119.99486 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00458 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00069 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47458 * 89.99842 * 25 23 21 27 27 H 1.48505 * 109.47397 * 209.99919 * 25 23 21 28 28 H 1.48500 * 109.47406 * 330.00057 * 25 23 21 29 29 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47395 * 300.05968 * 1 2 3 31 31 H 1.09004 * 109.46907 * 60.06144 * 1 2 3 32 32 H 1.08997 * 109.59280 * 65.61899 * 4 2 1 33 33 H 1.09013 * 109.69921 * 305.26814 * 4 2 1 34 34 H 1.08003 * 124.80148 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46853 * 0.04773 * 13 12 11 36 36 H 1.09008 * 109.58629 * 186.60862 * 16 5 4 37 37 H 1.08992 * 109.70400 * 66.25106 * 16 5 4 38 38 H 1.09007 * 109.49474 * 174.58905 * 17 16 5 39 39 H 1.09002 * 109.50144 * 294.64744 * 17 16 5 40 40 H 0.97006 * 120.00008 * 334.91671 * 20 18 2 41 41 H 0.97005 * 120.00079 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5046 -0.8287 -1.1699 6 6 4.2812 -0.3848 -2.1780 7 8 3.7707 0.0360 -3.1994 8 6 5.7416 -0.4088 -2.0441 9 16 6.7151 -1.7838 -1.5276 10 6 8.1383 -0.8522 -1.6982 11 7 7.8485 0.3460 -2.0924 12 6 6.5845 0.6257 -2.2890 13 6 6.1072 1.9797 -2.7470 14 9 5.4308 1.8485 -3.9646 15 9 5.2420 2.5180 -1.7886 16 6 4.1053 -1.4267 0.0302 17 6 3.5708 -0.6954 1.2657 18 6 2.0408 -0.7228 1.2484 19 1 1.6962 -1.7568 1.2353 20 7 1.5271 -0.0527 2.4456 21 6 1.3957 -0.7494 3.6171 22 1 1.6711 -1.7928 3.6586 23 6 0.9085 -0.1146 4.7513 24 7 0.5733 1.1573 4.7009 25 14 0.7285 -1.0652 6.3492 26 1 1.9856 -0.9591 7.1327 27 1 -0.3955 -0.4996 7.1379 28 1 0.4524 -2.4928 6.0475 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5147 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.7638 -0.1572 -2.1390 33 1 1.6054 -1.7211 -1.3012 34 1 9.1375 -1.2111 -1.4996 35 1 6.9632 2.6420 -2.8766 36 1 5.1896 -1.3245 -0.0142 37 1 3.8397 -2.4822 0.0871 38 1 3.9334 -1.1904 2.1666 39 1 3.9163 0.3383 1.2545 40 1 1.2801 0.8846 2.4085 41 1 0.2332 1.6010 5.4937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036102711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:20 Heat of formation + Delta-G solvation = -67.303867 kcal Electronic energy + Delta-G solvation = -29004.788362 eV Core-core repulsion = 24683.024792 eV Total energy + Delta-G solvation = -4321.763569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.05200 -47.03474 -40.69222 -39.71134 -37.68425 -34.73564 -33.03588 -31.69054 -31.47001 -29.43756 -28.43710 -26.27700 -25.18080 -24.88229 -23.03216 -21.85988 -21.44960 -19.87758 -19.56659 -18.74945 -17.53892 -17.32812 -17.11990 -16.82883 -16.54820 -15.99778 -15.35564 -15.07346 -14.89337 -14.54277 -14.21559 -13.87945 -13.82204 -13.72660 -13.38382 -13.37550 -13.13718 -12.91611 -12.54768 -12.49008 -12.37549 -11.91942 -11.68180 -11.30536 -11.21042 -10.98327 -10.85851 -10.73487 -10.48147 -10.42980 -10.23359 -10.11381 -9.84213 -9.72193 -9.67954 -9.51923 -8.93125 -8.63229 -7.00412 -5.80588 -3.09748 -0.17125 0.58690 1.04236 1.95249 2.55022 2.94603 3.10113 3.39685 3.45008 3.47008 3.92364 4.09412 4.38467 4.40915 4.54182 4.85236 4.87866 4.95036 5.16692 5.19079 5.24444 5.25267 5.45703 5.47600 5.63234 5.70825 5.87710 6.02675 6.07896 6.24323 6.28850 6.38790 6.44226 6.56157 6.74339 6.87879 6.98037 6.99757 7.25544 7.64937 7.92690 8.37282 9.48865 10.05883 10.40836 11.41762 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003301 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.738138 B = 8479.457881 C = 9043.467774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.584 3.416 7 O -0.509 6.509 8 C -0.233 4.233 9 S 0.223 5.777 10 C 0.016 3.984 11 N -0.452 5.452 12 C 0.040 3.960 13 C 0.346 3.654 14 F -0.176 7.176 15 F -0.187 7.187 16 C 0.097 3.903 17 C -0.150 4.150 18 C 0.185 3.815 19 H 0.049 0.951 20 N -0.719 5.719 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.213 0.787 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.389 -5.650 -15.092 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.001 3.999 5 N -0.325 5.325 6 C 0.368 3.632 7 O -0.385 6.385 8 C -0.359 4.359 9 S 0.479 5.521 10 C -0.280 4.280 11 N -0.165 5.165 12 C -0.099 4.099 13 C 0.289 3.711 14 F -0.157 7.157 15 F -0.168 7.168 16 C -0.027 4.027 17 C -0.192 4.192 18 C 0.074 3.926 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.229 0.771 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.323 -6.246 -15.237 21.825 hybrid contribution -0.189 0.567 0.895 1.076 sum 14.134 -5.680 -14.342 20.922 Atomic orbital electron populations 1.21651 0.93823 1.01829 1.02000 1.21759 0.96781 1.00221 0.94347 0.90998 1.21813 0.76989 1.01275 0.99811 1.48025 1.07531 1.59351 1.17556 1.16747 0.83526 0.78919 0.84022 1.90900 1.73335 1.46176 1.28073 1.25770 1.00232 0.98882 1.10981 1.84220 0.97304 1.13998 1.56556 1.28731 1.04945 0.92172 1.02112 1.65800 1.17354 1.18773 1.14526 1.20892 0.88007 0.97325 1.03690 1.19574 0.88014 0.89649 0.73858 1.93113 1.82353 1.96562 1.43692 1.93075 1.72886 1.86439 1.64398 1.22176 0.97439 0.97873 0.85216 1.22699 1.00625 1.00492 0.95341 1.20176 0.90097 0.95776 0.86535 0.93277 1.42401 1.76425 1.11422 1.05715 1.19204 1.36135 0.94082 0.87719 0.91226 1.24727 1.01959 0.95996 0.98033 1.69661 1.49854 1.09471 1.28891 0.86231 0.77286 0.78903 0.83983 1.21788 1.21806 1.20784 0.92991 0.90630 0.93706 0.89015 0.91019 0.77079 0.85150 0.91117 0.90607 0.90304 0.92001 0.78136 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.02 37.16 0.34 -1.83 16 2 C -0.11 -1.82 2.46 -90.51 -0.22 -2.04 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.12 1.77 5.71 -3.71 -0.02 1.75 16 5 N -0.59 -8.52 2.97 -174.31 -0.52 -9.04 16 6 C 0.58 8.98 6.96 -12.85 -0.09 8.89 16 7 O -0.51 -9.21 14.60 5.20 0.08 -9.13 16 8 C -0.23 -3.03 5.32 -37.10 -0.20 -3.22 16 9 S 0.22 1.88 20.42 -107.50 -2.19 -0.31 16 10 C 0.02 0.12 12.22 51.75 0.63 0.75 16 11 N -0.45 -4.91 10.50 -11.53 -0.12 -5.04 16 12 C 0.04 0.51 6.25 -83.89 -0.52 -0.02 16 13 C 0.35 4.43 5.28 36.00 0.19 4.62 16 14 F -0.18 -2.63 15.48 2.25 0.03 -2.60 16 15 F -0.19 -2.84 17.04 2.25 0.04 -2.80 16 16 C 0.10 1.26 5.98 -3.71 -0.02 1.23 16 17 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 18 C 0.18 3.41 2.19 -67.90 -0.15 3.26 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.72 -16.98 4.41 -53.40 -0.24 -17.22 16 21 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 25 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.42 7.37 -51.93 -0.38 1.04 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.38 7.03 -51.93 -0.36 1.01 16 33 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.21 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.82 4.25 -36.23 -0.15 0.66 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.38 9.88 7.51 -40.82 -0.31 9.57 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -32.80 355.39 -7.31 -40.10 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.98 Total: 6.72 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.46 Total: 3.92 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.15 Total: -57.94 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.07 Total: -5.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.19 Total: -0.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.80 -7.31 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.203 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds