Wall clock time and date at job start Wed Apr 1 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49818 * 2 1 4 4 C 1.53192 * 109.49963 * 239.94374 * 2 1 3 5 5 N 1.46921 * 108.77698 * 185.41789 * 4 2 1 6 6 C 1.34781 * 120.62772 * 233.62814 * 5 4 2 7 7 O 1.21691 * 120.00009 * 355.64159 * 6 5 4 8 8 C 1.46676 * 120.00143 * 175.64376 * 6 5 4 9 9 S 1.76218 * 126.12812 * 49.66331 * 8 6 5 10 10 C 1.70955 * 90.31274 * 179.97438 * 9 8 6 11 11 N 1.29427 * 110.39069 * 0.34710 * 10 9 8 12 12 C 1.30943 * 117.36622 * 359.72226 * 11 10 9 13 13 C 1.50699 * 122.90664 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.47003 * 120.04243 * 13 12 11 15 15 F 1.39888 * 109.47305 * 240.04276 * 13 12 11 16 16 C 1.46922 * 118.74266 * 53.60215 * 5 4 2 17 17 C 1.53194 * 108.77233 * 306.39424 * 16 5 4 18 18 C 1.53031 * 109.49762 * 120.06929 * 2 1 3 19 19 H 1.08995 * 109.43449 * 61.28065 * 18 2 1 20 20 N 1.46495 * 109.48792 * 301.32181 * 18 2 1 21 21 C 1.36937 * 120.00610 * 154.91483 * 20 18 2 22 22 H 1.07999 * 119.99486 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00458 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00069 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47458 * 89.99842 * 25 23 21 27 27 H 1.48505 * 109.47397 * 209.99919 * 25 23 21 28 28 H 1.48500 * 109.47406 * 330.00057 * 25 23 21 29 29 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47395 * 300.05968 * 1 2 3 31 31 H 1.09004 * 109.46907 * 60.06144 * 1 2 3 32 32 H 1.08997 * 109.59280 * 65.61899 * 4 2 1 33 33 H 1.09013 * 109.69921 * 305.26814 * 4 2 1 34 34 H 1.08003 * 124.80148 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46853 * 0.04773 * 13 12 11 36 36 H 1.09008 * 109.58629 * 186.60862 * 16 5 4 37 37 H 1.08992 * 109.70400 * 66.25106 * 16 5 4 38 38 H 1.09007 * 109.49474 * 174.58905 * 17 16 5 39 39 H 1.09002 * 109.50144 * 294.64744 * 17 16 5 40 40 H 0.97006 * 120.00008 * 334.91671 * 20 18 2 41 41 H 0.97005 * 120.00079 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5046 -0.8287 -1.1699 6 6 4.2812 -0.3848 -2.1780 7 8 3.7707 0.0360 -3.1994 8 6 5.7416 -0.4088 -2.0441 9 16 6.7151 -1.7838 -1.5276 10 6 8.1383 -0.8522 -1.6982 11 7 7.8485 0.3460 -2.0924 12 6 6.5845 0.6257 -2.2890 13 6 6.1072 1.9797 -2.7470 14 9 5.4308 1.8485 -3.9646 15 9 5.2420 2.5180 -1.7886 16 6 4.1053 -1.4267 0.0302 17 6 3.5708 -0.6954 1.2657 18 6 2.0408 -0.7228 1.2484 19 1 1.6962 -1.7568 1.2353 20 7 1.5271 -0.0527 2.4456 21 6 1.3957 -0.7494 3.6171 22 1 1.6711 -1.7928 3.6586 23 6 0.9085 -0.1146 4.7513 24 7 0.5733 1.1573 4.7009 25 14 0.7285 -1.0652 6.3492 26 1 1.9856 -0.9591 7.1327 27 1 -0.3955 -0.4996 7.1379 28 1 0.4524 -2.4928 6.0475 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5147 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.7638 -0.1572 -2.1390 33 1 1.6054 -1.7211 -1.3012 34 1 9.1375 -1.2111 -1.4996 35 1 6.9632 2.6420 -2.8766 36 1 5.1896 -1.3245 -0.0142 37 1 3.8397 -2.4822 0.0871 38 1 3.9334 -1.1904 2.1666 39 1 3.9163 0.3383 1.2545 40 1 1.2801 0.8846 2.4085 41 1 0.2332 1.6010 5.4937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036102711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:19 Heat of formation + Delta-G solvation = -89.357347 kcal Electronic energy + Delta-G solvation = -29005.744672 eV Core-core repulsion = 24683.024792 eV Total energy + Delta-G solvation = -4322.719880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.11495 -48.12229 -41.70503 -40.69899 -39.02003 -36.26796 -34.59003 -33.16568 -32.46222 -31.10485 -29.44328 -27.50815 -26.66316 -25.79289 -24.59670 -23.19447 -22.59008 -21.09816 -20.57841 -19.78281 -19.04880 -18.57445 -18.37989 -17.92795 -17.48168 -17.01307 -16.77224 -16.35082 -15.90790 -15.72009 -15.54778 -15.36323 -15.10243 -14.94709 -14.83354 -14.48799 -14.29568 -14.06639 -13.93721 -13.71279 -13.43975 -13.28733 -13.01486 -12.83990 -12.81967 -12.52526 -12.19529 -12.15372 -12.11051 -11.87933 -11.69755 -11.43824 -11.19289 -10.99095 -10.91930 -10.62113 -10.23270 -9.83164 -8.96601 -7.89747 -5.17957 -0.96656 -0.18724 0.33646 1.14219 1.45600 1.50162 1.50911 1.59186 1.87284 2.25759 2.59137 3.06103 3.13188 3.43386 3.47919 3.70604 3.75570 3.77185 3.85236 3.91246 4.00006 4.08120 4.22185 4.30912 4.44298 4.57869 4.58855 4.71593 4.73551 4.76763 4.90108 4.98342 5.14438 5.24091 5.35430 5.46010 5.55831 5.58319 6.09497 6.25482 6.31009 6.79709 7.37684 8.12968 8.36498 9.33944 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003301 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.738138 B = 8479.457881 C = 9043.467774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.047 0.953 4 C 0.129 3.871 5 N -0.595 5.595 6 C 0.583 3.417 7 O -0.546 6.546 8 C -0.282 4.282 9 S 0.284 5.716 10 C 0.035 3.965 11 N -0.474 5.474 12 C 0.036 3.964 13 C 0.333 3.667 14 F -0.193 7.193 15 F -0.206 7.206 16 C 0.104 3.896 17 C -0.141 4.141 18 C 0.181 3.819 19 H 0.057 0.943 20 N -0.732 5.732 21 C -0.231 4.231 22 H 0.081 0.919 23 C -0.076 4.076 24 N -0.972 5.972 25 Si 0.968 3.032 26 H -0.290 1.290 27 H -0.302 1.302 28 H -0.266 1.266 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.260 0.740 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.370 0.630 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.699 -8.530 -15.463 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.066 0.934 4 C 0.007 3.993 5 N -0.326 5.326 6 C 0.369 3.631 7 O -0.425 6.425 8 C -0.408 4.408 9 S 0.542 5.458 10 C -0.259 4.259 11 N -0.186 5.186 12 C -0.104 4.104 13 C 0.277 3.723 14 F -0.174 7.174 15 F -0.188 7.188 16 C -0.019 4.019 17 C -0.182 4.182 18 C 0.072 3.928 19 H 0.075 0.925 20 N -0.370 5.370 21 C -0.362 4.362 22 H 0.099 0.901 23 C -0.268 4.268 24 N -0.623 5.623 25 Si 0.798 3.202 26 H -0.217 1.217 27 H -0.229 1.229 28 H -0.191 1.191 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.275 0.725 35 H 0.183 0.817 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.201 0.799 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.667 -9.196 -15.629 24.629 hybrid contribution -0.795 1.410 0.944 1.874 sum 15.872 -7.786 -14.685 22.982 Atomic orbital electron populations 1.21562 0.93512 1.02324 1.01234 1.21618 0.96999 0.98924 0.94607 0.93441 1.21721 0.77497 1.02102 0.97988 1.48089 1.07436 1.59312 1.17797 1.17064 0.84707 0.77860 0.83488 1.90866 1.74496 1.47642 1.29518 1.25682 0.99388 1.01669 1.14041 1.83932 0.95891 1.11107 1.54915 1.29604 1.06688 0.90890 0.98738 1.65862 1.16184 1.20338 1.16255 1.20898 0.88896 0.97034 1.03572 1.20110 0.88231 0.91176 0.72829 1.93068 1.82879 1.96745 1.44698 1.93027 1.73754 1.86843 1.65159 1.22217 0.98390 0.98541 0.82736 1.22475 0.98807 0.99682 0.97210 1.20412 0.91297 0.95696 0.85402 0.92504 1.42600 1.76829 1.10830 1.06770 1.19624 1.33735 0.94511 0.88365 0.90077 1.25494 1.03125 0.96855 1.01322 1.69833 1.52072 1.11219 1.29208 0.85213 0.76582 0.78296 0.80115 1.21704 1.22930 1.19106 0.91776 0.94023 0.91816 0.89681 0.88558 0.72474 0.81705 0.89297 0.87724 0.90675 0.94350 0.79895 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.02 71.98 0.65 -3.47 16 2 C -0.10 -3.34 2.46 -10.72 -0.03 -3.36 16 3 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.13 3.59 5.71 86.36 0.49 4.08 16 5 N -0.59 -16.37 2.97 -823.61 -2.45 -18.82 16 6 C 0.58 17.60 6.96 86.45 0.60 18.20 16 7 O -0.55 -20.05 14.60 -4.32 -0.06 -20.11 16 8 C -0.28 -6.90 5.32 23.88 0.13 -6.77 16 9 S 0.28 3.74 20.42 -56.49 -1.15 2.59 16 10 C 0.04 0.39 12.22 130.60 1.60 1.99 16 11 N -0.47 -9.03 10.50 -190.40 -2.00 -11.02 16 12 C 0.04 0.88 6.25 42.09 0.26 1.14 16 13 C 0.33 8.53 5.28 71.24 0.38 8.90 16 14 F -0.19 -5.91 15.48 44.97 0.70 -5.21 16 15 F -0.21 -6.48 17.04 44.97 0.77 -5.72 16 16 C 0.10 2.46 5.98 86.36 0.52 2.97 16 17 C -0.14 -4.51 5.66 30.67 0.17 -4.34 16 18 C 0.18 6.58 2.19 45.01 0.10 6.68 16 19 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 20 N -0.73 -35.10 4.41 -322.85 -1.42 -36.52 16 21 C -0.23 -12.09 9.93 84.03 0.83 -11.25 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 24 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 25 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.62 7.37 -2.39 -0.02 1.60 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 2.53 7.03 -2.39 -0.02 2.52 16 33 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.26 0.19 8.06 -2.91 -0.02 0.17 16 35 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.09 1.79 4.25 -12.36 -0.05 1.74 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.37 19.80 7.51 -92.70 -0.70 19.10 16 41 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -74.53 355.39 3.20 -71.33 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.35 Total: 24.22 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.17 Total: 11.00 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -5.59 Total: -124.97 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.06 Total: -20.11 kcal Atomic # 9 Polarization: -12.39 SS G_CDS: 1.46 Total: -10.93 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.15 Total: 2.59 kcal Total: -74.53 3.20 -71.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036102711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.028 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds