Wall clock time and date at job start Wed Apr 1 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.47055 * 2 1 4 4 C 1.50703 * 109.47417 * 119.99461 * 2 1 3 5 5 H 1.07994 * 120.00353 * 120.00155 * 4 2 1 6 6 C 1.37881 * 119.99805 * 300.00381 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46769 * 90.00151 * 8 6 4 10 10 H 1.48493 * 109.47324 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47110 * 330.00316 * 8 6 4 12 12 C 1.50696 * 109.47495 * 239.99997 * 2 1 3 13 13 O 1.20833 * 119.99595 * 239.99944 * 12 2 1 14 14 O 1.34224 * 120.00302 * 59.99416 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47021 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00041 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 N 1.40103 * 119.99932 * 180.02562 * 18 16 15 20 20 C 1.34777 * 119.99513 * 180.02562 * 19 18 16 21 21 O 1.21545 * 120.00474 * 359.97438 * 20 19 18 22 22 C 1.47918 * 119.99724 * 179.97438 * 20 19 18 23 23 C 1.39631 * 119.99290 * 359.72457 * 22 20 19 24 24 C 1.37723 * 120.00427 * 179.76554 * 23 22 20 25 25 C 1.39671 * 119.99334 * 0.50868 * 24 23 22 26 26 C 1.43207 * 120.00608 * 179.72246 * 25 24 23 27 27 N 9.85027 * 144.13914 * 213.47001 * 16 1 2 28 28 C 1.39676 * 119.98856 * 359.74276 * 25 24 23 29 29 C 1.37725 * 119.99737 * 359.97438 * 28 25 24 30 30 H 1.08998 * 109.47013 * 60.00785 * 1 2 3 31 31 H 1.09005 * 109.46409 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47081 * 300.00323 * 1 2 3 33 33 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 35 35 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 36 36 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 37 37 H 0.96996 * 120.00224 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.99410 * 359.97438 * 23 22 20 39 39 H 1.08002 * 120.00335 * 180.23211 * 24 23 22 40 40 H 1.08009 * 120.00144 * 179.97438 * 28 25 24 41 41 H 1.07998 * 120.00213 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3214 -1.1199 4.0081 9 1 3.6296 -0.5453 4.4124 10 1 1.3432 -0.9489 5.1121 11 1 2.4861 -2.5658 3.7122 12 6 2.0324 -0.7104 -1.2304 13 8 2.7271 -1.6928 -1.1194 14 8 1.7081 -0.2519 -2.4495 15 6 2.2270 -0.9865 -3.5896 16 6 1.7631 -0.3294 -4.8639 17 8 1.0636 0.6603 -4.8161 18 7 2.1245 -0.8420 -6.0568 19 7 1.6937 -0.2308 -7.2415 20 6 2.0548 -0.7438 -8.4344 21 8 2.7546 -1.7364 -8.4823 22 6 1.5994 -0.0988 -9.6852 23 6 0.7908 1.0382 -9.6300 24 6 0.3707 1.6417 -10.7944 25 6 0.7448 1.1102 -12.0307 26 6 0.3032 1.7341 -13.2417 27 7 -0.0486 2.2280 -14.2023 28 6 1.5494 -0.0302 -12.0857 29 6 1.9741 -0.6300 -10.9209 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.7088 1.1617 3.4843 34 1 3.3165 -0.9861 -3.5567 35 1 1.8628 -2.0133 -3.5563 36 1 2.6836 -1.6338 -6.0951 37 1 1.1349 0.5612 -7.2033 38 1 0.4976 1.4462 -8.6740 39 1 -0.2517 2.5233 -10.7517 40 1 1.8385 -0.4416 -13.0415 41 1 2.5959 -1.5120 -10.9633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118466884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:34 Heat of formation + Delta-G solvation = -61.139051 kcal Electronic energy + Delta-G solvation = -27378.050920 eV Core-core repulsion = 23032.198241 eV Total energy + Delta-G solvation = -4345.852679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18042 -40.22851 -39.56148 -38.83463 -36.98050 -36.02311 -35.56971 -33.94731 -33.10209 -31.95435 -31.42425 -30.66961 -28.30105 -25.58107 -25.23593 -23.53181 -23.13983 -22.09264 -21.47425 -19.96944 -19.72034 -18.70995 -18.30205 -16.94007 -16.79307 -16.52518 -16.23157 -15.93700 -15.77972 -15.61790 -15.49329 -15.04577 -14.78091 -14.53702 -14.51244 -14.39406 -14.09491 -13.72297 -13.42107 -13.07298 -12.90060 -12.86510 -12.70421 -12.22697 -11.89182 -11.74240 -11.58405 -11.08133 -10.88213 -10.85418 -10.74973 -10.42910 -10.31591 -10.29052 -10.09896 -9.87241 -9.78613 -9.28299 -9.08814 -8.83745 -8.48758 -6.13983 -4.20255 -0.37081 0.53307 1.16699 1.71969 2.02140 2.19882 2.60731 3.04002 3.12895 3.14399 3.18598 3.28296 3.34354 3.40364 3.62770 3.98409 3.99056 4.09520 4.38608 4.40696 4.46895 4.61408 4.82727 5.05976 5.09159 5.16038 5.19506 5.29303 5.43076 5.49159 5.86703 5.89458 6.10587 6.22976 6.64083 6.81761 6.82103 6.83406 6.98878 7.04799 7.35072 7.39037 7.70756 7.87475 7.90658 8.08681 8.68277 8.87951 9.45569 10.93249 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.033849 B = 0.001518 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.996920 B =18439.880295 C =19173.187017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.067 0.933 4 C -0.515 4.515 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.469 3.531 13 O -0.514 6.514 14 O -0.341 6.341 15 C 0.055 3.945 16 C 0.520 3.480 17 O -0.509 6.509 18 N -0.524 5.524 19 N -0.511 5.511 20 C 0.558 3.442 21 O -0.529 6.529 22 C -0.097 4.097 23 C -0.085 4.085 24 C -0.074 4.074 25 C 0.001 3.999 26 C 0.249 3.751 27 N -0.404 5.404 28 C -0.076 4.076 29 C -0.055 4.055 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.435 0.565 37 H 0.433 0.567 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -0.651 -27.433 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.400 6.400 14 O -0.258 6.258 15 C -0.024 4.024 16 C 0.306 3.694 17 O -0.381 6.381 18 N -0.276 5.276 19 N -0.260 5.260 20 C 0.345 3.655 21 O -0.404 6.404 22 C -0.102 4.102 23 C -0.104 4.104 24 C -0.094 4.094 25 C -0.003 4.003 26 C -0.067 4.067 27 N -0.078 5.078 28 C -0.097 4.097 29 C -0.074 4.074 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.278 0.722 37 H 0.277 0.723 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.256 -0.053 -28.705 28.707 hybrid contribution 0.517 -0.694 1.101 1.401 sum 0.261 -0.746 -27.604 27.615 Atomic orbital electron populations 1.21749 0.95367 1.00134 1.02014 1.18815 0.95052 0.97096 0.84891 0.91503 1.21122 1.32172 1.13374 0.88670 0.90556 1.24937 0.94832 0.95006 0.99140 1.69883 1.36281 1.22726 1.23957 0.86363 0.78506 0.80131 0.81704 1.20510 1.21119 1.19666 1.25620 0.76471 0.83285 0.83303 1.90518 1.36399 1.26674 1.86425 1.86739 1.70050 1.54748 1.14295 1.22220 1.00813 0.96319 0.83076 1.20636 0.80700 0.84914 0.83154 1.90778 1.36134 1.24829 1.86353 1.44775 1.54891 1.31671 0.96311 1.44666 1.53319 1.30947 0.97044 1.18300 0.80851 0.84349 0.82046 1.90841 1.37665 1.25255 1.86685 1.19835 1.00551 0.97031 0.92787 1.21327 0.95762 0.94117 0.99223 1.21156 0.98471 0.99708 0.90083 1.16189 1.00384 0.96202 0.87519 1.25642 0.94099 0.93924 0.93056 1.81309 1.07904 1.08077 1.10538 1.21209 0.95478 0.93490 0.99500 1.21210 0.97115 0.99332 0.89724 0.95470 0.94938 0.88481 0.92616 0.87907 0.87909 0.72199 0.72309 0.84132 0.83816 0.83843 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 3 H 0.07 1.71 8.14 -51.92 -0.42 1.29 16 4 C -0.52 -14.04 8.37 -34.44 -0.29 -14.32 16 5 H 0.08 2.15 6.76 -52.49 -0.35 1.79 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 8 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.47 10.39 7.25 36.00 0.26 10.66 16 13 O -0.51 -12.06 15.21 -18.76 -0.29 -12.34 16 14 O -0.34 -6.46 9.66 -45.89 -0.44 -6.90 16 15 C 0.06 0.74 5.94 36.01 0.21 0.95 16 16 C 0.52 6.43 8.03 -10.99 -0.09 6.34 16 17 O -0.51 -8.02 16.34 -14.11 -0.23 -8.25 16 18 N -0.52 -4.87 6.26 31.22 0.20 -4.67 16 19 N -0.51 -4.09 6.21 30.55 0.19 -3.90 16 20 C 0.56 4.36 7.89 -12.30 -0.10 4.26 16 21 O -0.53 -5.59 16.17 5.33 0.09 -5.51 16 22 C -0.10 -0.50 5.88 -104.90 -0.62 -1.12 16 23 C -0.09 -0.30 9.52 -39.25 -0.37 -0.67 16 24 C -0.07 -0.23 9.73 -39.23 -0.38 -0.61 16 25 C 0.00 0.00 5.73 -106.90 -0.61 -0.61 16 26 C 0.25 1.53 15.32 -22.47 -0.34 1.19 16 27 N -0.40 -3.61 18.54 41.84 0.78 -2.84 16 28 C -0.08 -0.24 9.73 -39.23 -0.38 -0.63 16 29 C -0.05 -0.23 9.58 -39.25 -0.38 -0.61 16 30 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 35 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 36 H 0.44 3.36 8.00 -182.60 -1.46 1.89 16 37 H 0.43 2.91 6.02 -182.60 -1.10 1.81 16 38 H 0.14 0.27 6.39 -52.49 -0.34 -0.07 16 39 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.14 0.20 8.06 -52.48 -0.42 -0.22 16 41 H 0.15 0.60 7.64 -52.49 -0.40 0.20 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -34.91 376.45 -7.59 -42.51 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.06 Total: -0.89 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.10 Total: 4.85 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 1.79 Total: -35.09 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.87 Total: -33.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.91 -7.59 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.632 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds