Wall clock time and date at job start Wed Apr 1 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34933 * 117.00138 * 2 1 4 4 O 1.21642 * 120.00106 * 0.02562 * 3 2 1 5 5 C 1.46155 * 120.00325 * 179.97438 * 3 2 1 6 6 C 1.35373 * 120.00318 * 179.97438 * 5 3 2 7 7 C 1.46266 * 119.99916 * 180.02562 * 6 5 3 8 8 C 1.38128 * 125.82412 * 180.02562 * 7 6 5 9 9 C 1.39789 * 106.83201 * 179.76454 * 8 7 6 10 10 C 1.37753 * 106.90118 * 0.40811 * 9 8 7 11 11 C 1.46994 * 125.76642 * 179.84559 * 10 9 8 12 12 O 1.21667 * 119.99780 * 359.71741 * 11 10 9 13 13 N 1.34767 * 119.99935 * 179.71955 * 11 10 9 14 14 C 1.40045 * 120.00162 * 179.97438 * 13 11 10 15 15 C 1.40431 * 125.97292 * 0.02562 * 14 13 11 16 16 C 1.35237 * 107.86309 * 179.74127 * 15 14 13 17 17 N 1.34968 * 107.86722 * 0.41981 * 16 15 14 18 18 C 1.46500 * 125.97386 * 179.83847 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71606 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31242 * 125.97823 * 180.02562 * 14 13 11 28 28 O 1.34588 * 125.82918 * 0.02961 * 7 6 5 29 29 H 1.08999 * 109.47478 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46907 * 300.00163 * 1 2 3 31 31 H 1.09006 * 109.47357 * 59.99298 * 1 2 3 32 32 H 1.08004 * 119.99388 * 0.02562 * 5 3 2 33 33 H 1.07996 * 119.99846 * 0.02562 * 6 5 3 34 34 H 1.07997 * 126.58440 * 0.04656 * 8 7 6 35 35 H 1.08004 * 126.54480 * 180.26299 * 9 8 7 36 36 H 0.97008 * 120.00278 * 0.02562 * 13 11 10 37 37 H 1.08003 * 126.06945 * 0.02562 * 15 14 13 38 38 H 1.08001 * 126.06375 * 180.30807 * 16 15 14 39 39 H 1.09004 * 109.47078 * 4.72368 * 18 17 16 40 40 H 1.08993 * 109.47364 * 244.72139 * 18 17 16 41 41 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2022 0.0000 4 8 1.3791 2.2224 0.0005 5 6 3.5012 1.2788 0.0006 6 6 4.1158 2.4849 0.0000 7 6 5.5764 2.5614 0.0000 8 6 6.3252 3.7222 0.0000 9 6 7.6690 3.3370 0.0055 10 6 7.6908 1.9596 -0.0007 11 6 8.8970 1.1195 -0.0013 12 8 9.9984 1.6365 -0.0011 13 7 8.7828 -0.2233 -0.0020 14 6 9.9320 -1.0238 -0.0031 15 6 11.2584 -0.5627 -0.0030 16 6 12.0729 -1.6424 0.0016 17 7 11.2968 -2.7466 -0.0052 18 6 11.7719 -4.1324 -0.0067 19 6 11.1638 -4.8732 1.1563 20 1 10.4905 -4.3629 1.8290 21 6 11.4671 -6.2024 1.3616 22 7 12.2829 -6.8253 0.5393 23 14 10.7128 -7.1209 2.8027 24 1 11.1898 -8.5272 2.7978 25 1 11.1163 -6.4658 4.0730 26 1 9.2329 -7.0997 2.6831 27 7 9.9576 -2.3360 -0.0044 28 8 6.4202 1.5129 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 4.0893 0.3729 0.0006 33 1 3.5276 3.3907 -0.0004 34 1 5.9454 4.7331 0.0007 35 1 8.5262 3.9939 0.0110 36 1 7.9047 -0.6355 -0.0025 37 1 11.5725 0.4706 -0.0017 38 1 13.1527 -1.6241 0.0075 39 1 12.8582 -4.1441 0.0831 40 1 11.4791 -4.6159 -0.9386 41 1 12.6744 -6.3485 -0.2092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126398799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:29 Heat of formation + Delta-G solvation = -22.787701 kcal Electronic energy + Delta-G solvation = -27627.105778 eV Core-core repulsion = 23282.916139 eV Total energy + Delta-G solvation = -4344.189639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.79924 -42.33724 -41.53716 -40.56548 -37.86447 -36.58556 -35.66846 -35.21259 -34.22159 -32.85227 -31.10906 -30.82039 -28.93725 -28.17870 -26.27931 -25.04649 -23.90020 -22.90329 -22.59334 -22.00360 -21.17184 -20.77692 -19.44785 -19.22335 -18.95949 -18.24079 -17.71898 -17.69361 -17.46913 -17.06617 -16.80525 -16.40691 -15.84643 -15.75664 -15.54757 -15.09664 -15.04617 -14.41611 -14.35531 -14.20640 -14.13101 -13.96922 -13.75945 -13.71932 -13.58215 -13.23987 -12.89784 -12.62919 -12.16292 -11.95854 -11.85320 -11.82473 -11.80796 -11.79865 -11.38513 -11.09484 -11.02996 -10.69926 -9.92059 -9.45690 -9.21024 -8.78550 -6.56379 -0.99921 0.16301 0.95985 1.03793 1.25502 1.40190 1.51141 1.57291 1.62726 1.71796 1.78976 1.95236 2.19087 2.20338 2.48480 3.00774 3.22887 3.54407 3.71651 3.83954 3.89694 4.01022 4.10214 4.26600 4.31256 4.39026 4.46208 4.51753 4.61706 4.64331 4.69988 4.73895 4.77679 4.84365 4.96757 5.03076 5.26512 5.27118 5.52886 5.63756 5.71459 5.89251 6.06021 6.24781 6.40172 6.59115 6.68624 6.88334 7.18907 8.58208 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.002233 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.810309 B =12538.139009 C =15281.216467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.499 3.501 4 O -0.532 6.532 5 C -0.185 4.185 6 C 0.035 3.965 7 C 0.015 3.985 8 C -0.152 4.152 9 C -0.106 4.106 10 C -0.076 4.076 11 C 0.611 3.389 12 O -0.516 6.516 13 N -0.617 5.617 14 C 0.264 3.736 15 C -0.288 4.288 16 C 0.059 3.941 17 N -0.340 5.340 18 C 0.258 3.742 19 C -0.622 4.622 20 H 0.045 0.955 21 C -0.018 4.018 22 N -0.923 5.923 23 Si 1.119 2.881 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.276 1.276 27 N -0.342 5.342 28 O -0.162 6.162 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.188 0.812 34 H 0.206 0.794 35 H 0.184 0.816 36 H 0.425 0.575 37 H 0.175 0.825 38 H 0.206 0.794 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 22.418 -1.603 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.347 3.653 4 O -0.425 6.425 5 C -0.204 4.204 6 C 0.017 3.983 7 C -0.036 4.036 8 C -0.170 4.170 9 C -0.127 4.127 10 C -0.129 4.129 11 C 0.399 3.601 12 O -0.392 6.392 13 N -0.265 5.265 14 C 0.010 3.990 15 C -0.319 4.319 16 C -0.089 4.089 17 N -0.122 5.122 18 C 0.139 3.861 19 C -0.660 4.660 20 H 0.063 0.937 21 C -0.218 4.218 22 N -0.559 5.559 23 Si 0.940 3.060 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.201 1.201 27 N -0.173 5.173 28 O -0.058 6.058 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.205 0.795 34 H 0.223 0.777 35 H 0.201 0.799 36 H 0.263 0.737 37 H 0.192 0.808 38 H 0.223 0.777 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.545 20.083 -0.880 27.350 hybrid contribution 0.101 1.643 -0.995 1.924 sum -18.444 21.726 -1.875 28.561 Atomic orbital electron populations 1.23212 0.75127 1.05724 1.02661 1.86223 1.25078 1.32352 1.83677 1.21348 0.90168 0.81359 0.72409 1.90880 1.67868 1.36425 1.47302 1.22393 0.90029 1.00727 1.07234 1.21825 0.86539 0.99662 0.90235 1.21441 0.90503 0.85144 1.06505 1.22720 0.90967 1.00276 1.03029 1.22478 0.99839 0.91882 0.98466 1.21922 0.81373 0.94211 1.15399 1.16773 0.86996 0.80085 0.76198 1.90800 1.25356 1.73100 1.49929 1.42361 1.07479 1.05043 1.71587 1.19330 0.88440 0.89450 1.01791 1.21759 0.89476 1.00919 1.19700 1.23235 1.00031 0.85274 1.00343 1.48615 1.02086 1.07463 1.54047 1.19463 0.95224 0.73965 0.97447 1.22277 1.31785 0.98861 1.13063 0.93692 1.27252 0.95150 0.95627 1.03795 1.70948 1.29596 1.39801 1.15508 0.82891 0.75746 0.75232 0.72167 1.19981 1.19629 1.20121 1.77302 0.99928 1.10141 1.29894 1.84056 1.15111 1.36118 1.70514 0.85404 0.91842 0.91817 0.83204 0.79457 0.77696 0.79898 0.73749 0.80777 0.77717 0.92514 0.96438 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.45 113.37 1.18 1.48 16 2 O -0.36 -6.06 10.48 -58.49 -0.61 -6.67 16 3 C 0.50 8.75 7.87 69.88 0.55 9.30 16 4 O -0.53 -11.20 16.01 19.37 0.31 -10.89 16 5 C -0.18 -2.61 9.80 23.66 0.23 -2.37 16 6 C 0.04 0.39 9.64 23.70 0.23 0.62 16 7 C 0.02 0.21 7.02 24.33 0.17 0.38 16 8 C -0.15 -1.56 10.88 22.62 0.25 -1.31 16 9 C -0.11 -1.62 10.64 22.53 0.24 -1.38 16 10 C -0.08 -1.61 7.16 24.45 0.18 -1.43 16 11 C 0.61 17.19 7.77 86.54 0.67 17.87 16 12 O -0.52 -16.56 13.99 -4.24 -0.06 -16.62 16 13 N -0.62 -19.24 5.44 -310.87 -1.69 -20.93 16 14 C 0.26 10.47 8.10 133.36 1.08 11.55 16 15 C -0.29 -10.83 9.60 22.11 0.21 -10.61 16 16 C 0.06 2.26 11.43 83.52 0.95 3.22 16 17 N -0.34 -15.79 3.67 -351.84 -1.29 -17.08 16 18 C 0.26 13.14 5.57 85.64 0.48 13.62 16 19 C -0.62 -35.19 9.24 25.60 0.24 -34.96 16 20 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16 21 C -0.02 -1.03 5.46 84.65 0.46 -0.56 16 22 N -0.92 -53.64 13.65 21.45 0.29 -53.34 16 23 Si 1.12 49.54 29.90 68.60 2.05 51.60 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 N -0.34 -15.93 12.42 -54.50 -0.68 -16.60 16 28 O -0.16 -3.05 10.01 -8.99 -0.09 -3.14 16 29 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 32 H 0.15 2.06 7.78 -2.91 -0.02 2.04 16 33 H 0.19 1.30 7.52 -2.91 -0.02 1.28 16 34 H 0.21 0.49 8.06 -2.91 -0.02 0.46 16 35 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.42 11.51 8.57 -92.70 -0.79 10.71 16 37 H 0.18 6.11 5.91 -2.91 -0.02 6.09 16 38 H 0.21 6.00 8.06 -2.91 -0.02 5.97 16 39 H 0.06 2.75 7.94 -2.39 -0.02 2.73 16 40 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 41 H 0.26 14.98 7.22 -92.71 -0.67 14.32 16 Total: -1.00 -75.31 376.86 5.76 -69.55 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.41 Total: 18.75 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 7.12 Total: 5.39 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.37 Total: -107.96 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.45 Total: -37.32 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.60 kcal Total: -75.31 5.76 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126398799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.758 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds