Wall clock time and date at job start Wed Apr 1 2020 03:20:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34228 * 117.00067 * 2 1
4 4 O 1.20821 * 120.00090 * 359.97438 * 3 2 1
5 5 C 1.50701 * 120.00020 * 179.97438 * 3 2 1
6 6 C 1.53003 * 109.46900 * 179.97438 * 5 3 2
7 7 N 1.46503 * 109.46888 * 180.02562 * 6 5 3
8 8 C 1.36939 * 120.00021 * 264.59561 * 7 6 5
9 9 H 1.08001 * 119.99843 * 134.36959 * 8 7 6
10 10 C 1.38988 * 120.00339 * 314.37482 * 8 7 6
11 11 N 1.31412 * 119.99771 * 3.24162 * 10 8 7
12 12 Si 1.86796 * 120.00464 * 183.24659 * 10 8 7
13 13 H 1.48499 * 109.46861 * 359.97438 * 12 10 8
14 14 H 1.48501 * 109.47507 * 119.99763 * 12 10 8
15 15 H 1.48498 * 109.47345 * 240.00063 * 12 10 8
16 16 C 1.34774 * 120.00282 * 84.60251 * 7 6 5
17 17 O 1.21642 * 119.99786 * 354.92016 * 16 7 6
18 18 C 1.47364 * 120.00191 * 175.19465 * 16 7 6
19 19 C 1.36332 * 126.37113 * 184.40435 * 18 16 7
20 20 O 1.34292 * 107.10454 * 179.84430 * 19 18 16
21 21 C 1.34482 * 108.17310 * 0.42257 * 20 19 18
22 22 C 1.47866 * 125.47693 * 179.75418 * 21 20 19
23 23 C 1.39979 * 120.55789 * 359.69664 * 22 21 20
24 24 C 1.38372 * 118.29231 * 179.78082 * 23 22 21
25 25 C 1.38345 * 119.30142 * 0.47570 * 24 23 22
26 26 N 1.31911 * 121.07505 * 359.76578 * 25 24 23
27 27 C 1.31712 * 121.87823 * 359.97438 * 26 25 24
28 28 N 1.30904 * 109.04096 * 359.73806 * 21 20 19
29 29 H 1.08997 * 109.47134 * 180.02562 * 1 2 3
30 30 H 1.08994 * 109.47185 * 299.99975 * 1 2 3
31 31 H 1.08998 * 109.46953 * 59.99968 * 1 2 3
32 32 H 1.09004 * 109.47015 * 60.00641 * 5 3 2
33 33 H 1.08986 * 109.47844 * 300.00177 * 5 3 2
34 34 H 1.08998 * 109.46950 * 60.00838 * 6 5 3
35 35 H 1.09002 * 109.47472 * 300.00441 * 6 5 3
36 36 H 0.96998 * 120.00200 * 179.97438 * 11 10 8
37 37 H 1.08004 * 126.44641 * 0.02562 * 19 18 16
38 38 H 1.08000 * 120.85788 * 0.02562 * 23 22 21
39 39 H 1.07996 * 120.34751 * 180.22872 * 24 23 22
40 40 H 1.07991 * 119.46039 * 179.78772 * 25 24 23
41 41 H 1.07993 * 119.71735 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 6 4.0001 2.7421 -0.0002
7 7 5.4631 2.8188 -0.0002
8 6 6.1410 2.9667 1.1803
9 1 7.0105 2.3591 1.3836
10 6 5.7102 3.8988 2.1170
11 7 4.6161 4.5929 1.8980
12 14 6.6865 4.1649 3.6872
13 1 7.8684 3.2660 3.6935
14 1 7.1382 5.5779 3.7558
15 1 5.8286 3.8620 4.8609
16 6 6.1419 2.7438 -1.1622
17 8 5.5481 2.5201 -2.2000
18 6 7.6040 2.9267 -1.1745
19 6 8.4052 2.9612 -2.2771
20 8 9.6630 3.1487 -1.8456
21 6 9.6398 3.2190 -0.5028
22 6 10.8195 3.4150 0.3668
23 6 12.0990 3.5395 -0.1869
24 6 13.1692 3.7260 0.6701
25 6 12.9440 3.7731 2.0343
26 7 11.7273 3.6477 2.5282
27 6 10.6765 3.4736 1.7533
28 7 8.4048 3.0864 -0.0896
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 3.9564 0.7806 -0.8892
33 1 3.9558 0.7810 0.8907
34 1 3.6101 3.2367 0.8894
35 1 3.6107 3.2357 -0.8906
36 1 4.3152 5.2432 2.5519
37 1 8.0876 2.8600 -3.3044
38 1 12.2467 3.4952 -1.2559
39 1 14.1703 3.8298 0.2784
40 1 13.7778 3.9151 2.7057
41 1 9.6961 3.3746 2.1951
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001132452576.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:01
Heat of formation + Delta-G solvation = -63.456403 kcal
Electronic energy + Delta-G solvation = -29601.845880 eV
Core-core repulsion = 25255.892713 eV
Total energy + Delta-G solvation = -4345.953167 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-44.26590 -41.55029 -40.99488 -40.33333 -37.65043 -36.88553 -35.81243 -34.19402
-33.81886 -32.90783 -32.33009 -30.23595 -28.74329 -26.95555 -26.15328 -25.35075
-24.69871 -23.54904 -22.38543 -21.69238 -21.15077 -19.80683 -18.76905 -18.23757
-17.84793 -17.72499 -17.65121 -17.55476 -17.42722 -16.99981 -16.75242 -16.22089
-16.07580 -15.54394 -15.16132 -14.91797 -14.85700 -14.71995 -14.49171 -14.15354
-14.06292 -13.76356 -13.68455 -13.09730 -13.02288 -12.99523 -12.80981 -12.70964
-12.33561 -11.99734 -11.95222 -11.78605 -11.61651 -11.46501 -11.26997 -11.03669
-10.65572 -10.57298 -10.53889 -9.58808 -9.36331 -8.22802 -6.10840 -0.48664
0.21678 0.40015 1.14353 1.32693 1.44351 1.47791 1.50049 1.58215
1.70328 2.28843 2.49527 2.65139 2.83263 3.00957 3.15022 3.51382
3.81427 3.82124 3.85880 3.99285 4.03381 4.15710 4.18553 4.30913
4.32606 4.33969 4.43000 4.60362 4.61083 4.69750 4.75185 4.79035
4.90309 5.04535 5.08632 5.19906 5.28966 5.44639 5.64057 5.70849
5.95515 6.49255 6.61727 6.71325 6.90849 7.13446 7.44841 7.85932
8.75258
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.014317 B = 0.003244 C = 0.002808
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.242516 B = 8628.830986 C = 9968.059144
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.363 6.363
3 C 0.475 3.525
4 O -0.535 6.535
5 C -0.114 4.114
6 C 0.126 3.874
7 N -0.429 5.429
8 C -0.308 4.308
9 H 0.109 0.891
10 C 0.004 3.996
11 N -0.904 5.904
12 Si 0.971 3.029
13 H -0.248 1.248
14 H -0.286 1.286
15 H -0.278 1.278
16 C 0.532 3.468
17 O -0.618 6.618
18 C -0.061 4.061
19 C 0.013 3.987
20 O -0.186 6.186
21 C 0.206 3.794
22 C -0.077 4.077
23 C -0.046 4.046
24 C -0.154 4.154
25 C 0.108 3.892
26 N -0.508 5.508
27 C 0.128 3.872
28 N -0.429 5.429
29 H 0.138 0.862
30 H 0.060 0.940
31 H 0.060 0.940
32 H 0.102 0.898
33 H 0.114 0.886
34 H 0.114 0.886
35 H 0.034 0.966
36 H 0.269 0.731
37 H 0.261 0.739
38 H 0.166 0.834
39 H 0.189 0.811
40 H 0.197 0.803
41 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.046 -5.731 -2.631 14.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.279 6.279
3 C 0.319 3.681
4 O -0.425 6.425
5 C -0.153 4.153
6 C 0.003 3.997
7 N -0.145 5.145
8 C -0.437 4.437
9 H 0.126 0.874
10 C -0.198 4.198
11 N -0.543 5.543
12 Si 0.796 3.204
13 H -0.171 1.171
14 H -0.213 1.213
15 H -0.204 1.204
16 C 0.322 3.678
17 O -0.507 6.507
18 C -0.182 4.182
19 C -0.061 4.061
20 O -0.072 6.072
21 C 0.000 4.000
22 C -0.080 4.080
23 C -0.073 4.073
24 C -0.173 4.173
25 C -0.049 4.049
26 N -0.217 5.217
27 C -0.030 4.030
28 N -0.158 5.158
29 H 0.156 0.844
30 H 0.079 0.921
31 H 0.079 0.921
32 H 0.120 0.880
33 H 0.132 0.868
34 H 0.131 0.869
35 H 0.053 0.947
36 H 0.079 0.921
37 H 0.276 0.724
38 H 0.183 0.817
39 H 0.206 0.794
40 H 0.214 0.786
41 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 12.071 -5.371 -1.467 13.293
hybrid contribution -0.424 0.542 -0.876 1.114
sum 11.647 -4.829 -2.342 12.824
Atomic orbital electron populations
1.23582 0.74759 1.05871 1.02463 1.86506 1.25179 1.32359 1.83895
1.23751 0.91963 0.81290 0.71068 1.90640 1.67777 1.37431 1.46630
1.21653 0.87032 1.00789 1.05825 1.21308 0.81524 0.93074 1.03802
1.43505 1.04988 1.60488 1.05517 1.19950 1.11292 1.19552 0.92879
0.87364 1.26270 0.96474 0.94320 1.02713 1.69786 1.22580 1.24628
1.37271 0.85188 0.79291 0.78282 0.77663 1.17128 1.21257 1.20404
1.17586 0.85128 0.81472 0.83643 1.90624 1.69867 1.57223 1.32956
1.21753 0.95671 1.10955 0.89835 1.25752 0.78977 1.00032 1.01303
1.84340 1.30633 1.68804 1.23444 1.24204 0.93774 1.03018 0.78993
1.18389 0.89623 1.07885 0.92131 1.22030 0.89767 0.92824 1.02650
1.22540 1.01349 0.99778 0.93612 1.23722 0.94214 0.91697 0.95292
1.67837 1.00294 1.13317 1.40209 1.22792 0.98333 0.93002 0.88892
1.71550 0.99523 1.14562 1.30214 0.84378 0.92133 0.92088 0.87986
0.86760 0.86850 0.94746 0.92094 0.72381 0.81694 0.79426 0.78631
0.83856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.62 10.56 113.37 1.20 1.82 16
2 O -0.36 -11.76 10.57 -51.40 -0.54 -12.30 16
3 C 0.48 18.89 7.96 71.24 0.57 19.46 16
4 O -0.54 -24.39 15.73 21.98 0.35 -24.04 16
5 C -0.11 -4.77 6.10 29.85 0.18 -4.59 16
6 C 0.13 6.43 4.12 86.38 0.36 6.79 16
7 N -0.43 -22.35 2.53 -639.30 -1.62 -23.97 16
8 C -0.31 -16.02 7.61 84.08 0.64 -15.38 16
9 H 0.11 5.56 6.36 -2.91 -0.02 5.55 16
10 C 0.00 0.18 5.36 84.94 0.46 0.64 16
11 N -0.90 -50.40 10.82 21.67 0.23 -50.16 16
12 Si 0.97 42.35 29.55 68.60 2.03 44.38 16
13 H -0.25 -10.20 6.98 99.48 0.69 -9.51 16
14 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
16 C 0.53 26.64 7.58 86.65 0.66 27.30 16
17 O -0.62 -31.97 16.52 -4.16 -0.07 -32.04 16
18 C -0.06 -2.63 6.71 40.49 0.27 -2.36 16
19 C 0.01 0.44 11.94 67.38 0.80 1.24 16
20 O -0.19 -5.67 10.53 -4.13 -0.04 -5.71 16
21 C 0.21 7.11 7.89 87.38 0.69 7.80 16
22 C -0.08 -2.19 5.89 -20.00 -0.12 -2.31 16
23 C -0.05 -0.87 9.85 22.72 0.22 -0.64 16
24 C -0.15 -2.05 10.10 22.33 0.23 -1.82 16
25 C 0.11 1.86 11.17 84.71 0.95 2.81 16
26 N -0.51 -13.88 10.35 -194.78 -2.02 -15.89 16
27 C 0.13 4.02 10.85 85.02 0.92 4.95 16
28 N -0.43 -18.22 7.90 -294.26 -2.32 -20.54 16
29 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16
30 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16
31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16
32 H 0.10 4.15 8.05 -2.38 -0.02 4.13 16
33 H 0.11 4.48 8.14 -2.39 -0.02 4.46 16
34 H 0.11 6.33 5.26 -2.39 -0.01 6.32 16
35 H 0.03 1.87 7.62 -2.39 -0.02 1.86 16
36 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16
37 H 0.26 6.48 8.06 -2.91 -0.02 6.46 16
38 H 0.17 2.30 7.97 -2.91 -0.02 2.28 16
39 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16
40 H 0.20 1.79 8.06 -2.92 -0.02 1.76 16
41 H 0.14 5.29 7.70 -2.91 -0.02 5.27 16
Total: -1.00 -74.98 367.37 5.09 -69.89
By element:
Atomic # 1 Polarization: 23.64 SS G_CDS: 1.08 Total: 24.71 kcal
Atomic # 6 Polarization: 37.66 SS G_CDS: 8.02 Total: 45.68 kcal
Atomic # 7 Polarization: -104.84 SS G_CDS: -5.72 Total: -110.57 kcal
Atomic # 8 Polarization: -73.78 SS G_CDS: -0.31 Total: -74.09 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal
Total: -74.98 5.09 -69.89 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132452576.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.431 kcal
(2) G-P(sol) polarization free energy of solvation -74.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.456 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds