Wall clock time and date at job start Wed Apr 1 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99974 * 2 1 4 4 O 1.20829 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00148 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47214 * 179.97438 * 5 3 2 7 7 N 1.46489 * 109.47226 * 179.97438 * 6 5 3 8 8 C 1.36790 * 120.00091 * 269.99751 * 7 6 5 9 9 H 1.07996 * 120.00093 * 139.86999 * 8 7 6 10 10 C 1.39112 * 119.99811 * 319.87685 * 8 7 6 11 11 N 1.31315 * 120.00118 * 161.34969 * 10 8 7 12 12 Si 1.86807 * 119.99885 * 341.34646 * 10 8 7 13 13 H 1.48498 * 109.46653 * 95.62658 * 12 10 8 14 14 H 1.48499 * 109.46802 * 215.62300 * 12 10 8 15 15 H 1.48492 * 109.47131 * 335.62478 * 12 10 8 16 16 C 1.34779 * 120.00213 * 89.99575 * 7 6 5 17 17 O 1.21539 * 119.99704 * 354.79719 * 16 7 6 18 18 C 1.48189 * 120.00098 * 175.06743 * 16 7 6 19 19 C 1.41974 * 126.85453 * 181.62563 * 18 16 7 20 20 C 1.36678 * 103.81673 * 179.89358 * 19 18 16 21 21 C 1.47859 * 126.80542 * 180.11939 * 20 19 18 22 22 C 1.39983 * 120.56069 * 180.27321 * 21 20 19 23 23 C 1.38359 * 118.29463 * 179.97438 * 22 21 20 24 24 C 1.38344 * 119.30519 * 0.02562 * 23 22 21 25 25 N 1.31912 * 121.07908 * 0.02562 * 24 23 22 26 26 C 1.31707 * 121.87360 * 359.67643 * 25 24 23 27 27 O 1.34471 * 106.39209 * 0.36701 * 20 19 18 28 28 N 1.20883 * 111.75365 * 359.75237 * 27 20 19 29 29 H 1.08998 * 109.46982 * 60.00846 * 1 2 3 30 30 H 1.09001 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47187 * 300.00220 * 1 2 3 32 32 H 1.08994 * 109.47647 * 59.99319 * 5 3 2 33 33 H 1.09007 * 109.46561 * 299.99097 * 5 3 2 34 34 H 1.08994 * 109.47192 * 59.99258 * 6 5 3 35 35 H 1.09006 * 109.46559 * 299.99667 * 6 5 3 36 36 H 0.96997 * 120.00075 * 179.97438 * 11 10 8 37 37 H 1.08003 * 128.09165 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.85616 * 0.02562 * 22 21 20 39 39 H 1.08005 * 120.34546 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.46094 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.71674 * 180.28740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4630 2.8188 -0.0011 8 6 6.1460 2.8551 1.1836 9 1 7.0656 2.2998 1.2940 10 6 5.6558 3.6073 2.2462 11 7 6.0767 3.3708 3.4674 12 14 4.3990 4.9540 1.9359 13 1 3.0330 4.4183 2.1646 14 1 4.6481 6.0868 2.8633 15 1 4.5167 5.4274 0.5334 16 6 6.1361 2.8536 -1.1682 17 8 5.5380 2.7262 -2.2186 18 6 7.6061 3.0412 -1.1706 19 6 8.4511 3.1317 -2.3078 20 6 9.6983 3.3015 -1.7750 21 6 10.9663 3.4556 -2.5198 22 6 12.1776 3.6171 -1.8371 23 6 13.3360 3.7566 -2.5808 24 6 13.2610 3.7329 -3.9620 25 7 12.1049 3.5802 -4.5786 26 6 10.9762 3.4378 -3.9150 27 8 9.5444 3.2951 -0.4392 28 7 8.3868 3.1509 -0.1223 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.9558 0.7809 -0.8907 33 1 3.9564 0.7807 0.8893 34 1 3.6107 3.2364 0.8888 35 1 3.6101 3.2359 -0.8912 36 1 5.7352 3.8955 4.2083 37 1 8.1732 3.0808 -3.3502 38 1 12.2074 3.6315 -0.7576 39 1 14.2888 3.8828 -2.0881 40 1 14.1637 3.8412 -4.5449 41 1 10.0498 3.3104 -4.4553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132666389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:59 Heat of formation + Delta-G solvation = 1.829858 kcal Electronic energy + Delta-G solvation = -29212.359623 eV Core-core repulsion = 24869.237481 eV Total energy + Delta-G solvation = -4343.122142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.44858 -40.28350 -40.17769 -38.92875 -36.40480 -35.32533 -33.90336 -33.38269 -32.42206 -32.18933 -30.98501 -29.60908 -27.72836 -25.42631 -24.95380 -24.22584 -23.91836 -22.49274 -21.80868 -20.56864 -19.25011 -18.29355 -17.55039 -17.26646 -17.08900 -16.61873 -16.44621 -16.31280 -16.30799 -16.13990 -15.29467 -14.84239 -14.24822 -14.19142 -14.07598 -13.90443 -13.53223 -13.51166 -13.24151 -13.14385 -12.76380 -12.64432 -12.39236 -12.07471 -11.91438 -11.81781 -11.28137 -11.18218 -10.79668 -10.69530 -10.68763 -10.30029 -10.17586 -10.00304 -9.86869 -9.77636 -9.73881 -9.49414 -8.99972 -8.43715 -8.06208 -6.62730 -4.25007 0.46099 1.03278 1.93218 2.26765 2.45014 2.85459 3.03817 3.16279 3.17515 3.23127 3.66670 3.86996 3.98144 4.03144 4.23317 4.54003 4.62681 4.66924 4.73068 4.86634 4.98039 5.06862 5.13563 5.19985 5.36199 5.40665 5.43814 5.44854 5.47920 5.57853 5.59720 5.81138 5.93785 5.95166 6.01871 6.17335 6.27741 6.40620 6.41351 6.56715 7.08347 7.70937 7.83733 7.95667 8.19538 8.55601 8.81274 9.09356 9.36634 10.45658 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.002787 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.662838 B =10045.929894 C =11266.475005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.115 3.885 7 N -0.437 5.437 8 C -0.341 4.341 9 H 0.125 0.875 10 C 0.077 3.923 11 N -0.841 5.841 12 Si 0.866 3.134 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.260 1.260 16 C 0.540 3.460 17 O -0.585 6.585 18 C -0.001 4.001 19 C -0.161 4.161 20 C -0.028 4.028 21 C -0.054 4.054 22 C -0.057 4.057 23 C -0.169 4.169 24 C 0.097 3.903 25 N -0.480 5.480 26 C 0.124 3.876 27 O 0.115 5.885 28 N -0.276 5.276 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.279 0.721 37 H 0.176 0.824 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -2.794 -7.998 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.008 4.008 7 N -0.156 5.156 8 C -0.469 4.469 9 H 0.143 0.857 10 C -0.134 4.134 11 N -0.475 5.475 12 Si 0.693 3.307 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.184 1.184 16 C 0.330 3.670 17 O -0.469 6.469 18 C -0.159 4.159 19 C -0.183 4.183 20 C -0.091 4.091 21 C -0.057 4.057 22 C -0.083 4.083 23 C -0.188 4.188 24 C -0.059 4.059 25 N -0.188 5.188 26 C -0.035 4.035 27 O 0.038 5.962 28 N 0.026 4.974 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.194 0.806 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.175 0.825 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.610 -2.551 -7.880 10.004 hybrid contribution -0.908 0.809 0.412 1.284 sum 4.702 -1.742 -7.469 8.996 Atomic orbital electron populations 1.23214 0.76981 1.03306 1.02425 1.86533 1.23007 1.33876 1.84375 1.23937 0.92217 0.81075 0.71616 1.90650 1.67367 1.36333 1.45522 1.21756 0.86338 1.01284 1.06753 1.21481 0.82201 0.93765 1.03331 1.43602 1.04191 1.61896 1.05940 1.19477 1.10066 1.30624 0.86738 0.85743 1.25394 0.96904 0.96313 0.94759 1.69660 1.41682 1.37435 0.98685 0.87075 0.81386 0.82492 0.79776 1.19226 1.20940 1.18404 1.17083 0.83691 0.82351 0.83917 1.90661 1.68194 1.56576 1.31451 1.23224 0.97110 1.06961 0.88590 1.22542 0.89931 1.04820 1.01028 1.22104 0.94466 1.07868 0.84708 1.18690 0.89884 1.03438 0.93701 1.21801 0.91123 0.93939 1.01429 1.22104 0.99359 1.01990 0.95377 1.22889 0.95996 0.94716 0.92324 1.67739 0.98514 1.11991 1.40539 1.22871 0.97010 0.94093 0.89484 1.85031 1.24079 1.65688 1.21401 1.74881 0.88151 1.12833 1.21554 0.92055 0.88359 0.92048 0.87184 0.86474 0.90333 0.89821 0.91071 0.80632 0.83678 0.84210 0.82501 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.56 10.57 -39.24 -0.41 -5.98 16 3 C 0.47 8.45 7.96 36.01 0.29 8.73 16 4 O -0.51 -10.42 15.73 -18.75 -0.29 -10.71 16 5 C -0.12 -2.29 6.14 -27.88 -0.17 -2.46 16 6 C 0.12 2.54 3.43 -4.05 -0.01 2.53 16 7 N -0.44 -10.41 2.14 -115.78 -0.25 -10.66 16 8 C -0.34 -8.71 8.29 -15.02 -0.12 -8.83 16 9 H 0.13 3.38 6.37 -52.49 -0.33 3.05 16 10 C 0.08 1.99 5.35 -17.45 -0.09 1.90 16 11 N -0.84 -22.57 13.95 55.50 0.77 -21.79 16 12 Si 0.87 20.58 24.89 -169.99 -4.23 16.35 16 13 H -0.27 -6.22 6.74 56.52 0.38 -5.84 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.26 -6.33 7.11 56.52 0.40 -5.92 16 16 C 0.54 12.63 7.65 -12.17 -0.09 12.54 16 17 O -0.58 -14.07 16.58 5.33 0.09 -13.98 16 18 C 0.00 -0.03 6.90 -82.63 -0.57 -0.60 16 19 C -0.16 -2.70 10.35 -38.72 -0.40 -3.10 16 20 C -0.03 -0.43 7.17 -36.21 -0.26 -0.69 16 21 C -0.05 -0.66 5.89 -104.83 -0.62 -1.28 16 22 C -0.06 -0.58 9.87 -38.88 -0.38 -0.97 16 23 C -0.17 -1.38 10.10 -39.50 -0.40 -1.78 16 24 C 0.10 0.87 11.17 -17.48 -0.20 0.67 16 25 N -0.48 -5.46 10.35 -12.91 -0.13 -5.59 16 26 C 0.12 1.42 10.76 -17.12 -0.18 1.24 16 27 O 0.12 2.05 11.09 16.02 0.18 2.23 16 28 N -0.28 -5.88 9.02 33.35 0.30 -5.58 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.08 1.82 3.29 -51.93 -0.17 1.65 16 35 H 0.08 1.87 7.46 -51.93 -0.39 1.48 16 36 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.18 2.48 7.49 -52.48 -0.39 2.09 16 38 H 0.15 1.33 8.03 -52.48 -0.42 0.91 16 39 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.16 1.61 7.17 -52.49 -0.38 1.23 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -32.01 361.76 -4.88 -36.89 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.20 Total: 4.02 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -2.15 Total: 9.36 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.69 Total: -43.63 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.44 Total: -28.44 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.23 Total: 16.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.01 -4.88 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132666389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds