Wall clock time and date at job start Wed Apr 1 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99974 * 2 1 4 4 O 1.20829 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00148 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47214 * 179.97438 * 5 3 2 7 7 N 1.46489 * 109.47226 * 179.97438 * 6 5 3 8 8 C 1.36790 * 120.00091 * 269.99751 * 7 6 5 9 9 H 1.07996 * 120.00093 * 139.86999 * 8 7 6 10 10 C 1.39112 * 119.99811 * 319.87685 * 8 7 6 11 11 N 1.31315 * 120.00118 * 161.34969 * 10 8 7 12 12 Si 1.86807 * 119.99885 * 341.34646 * 10 8 7 13 13 H 1.48498 * 109.46653 * 95.62658 * 12 10 8 14 14 H 1.48499 * 109.46802 * 215.62300 * 12 10 8 15 15 H 1.48492 * 109.47131 * 335.62478 * 12 10 8 16 16 C 1.34779 * 120.00213 * 89.99575 * 7 6 5 17 17 O 1.21539 * 119.99704 * 354.79719 * 16 7 6 18 18 C 1.48189 * 120.00098 * 175.06743 * 16 7 6 19 19 C 1.41974 * 126.85453 * 181.62563 * 18 16 7 20 20 C 1.36678 * 103.81673 * 179.89358 * 19 18 16 21 21 C 1.47859 * 126.80542 * 180.11939 * 20 19 18 22 22 C 1.39983 * 120.56069 * 180.27321 * 21 20 19 23 23 C 1.38359 * 118.29463 * 179.97438 * 22 21 20 24 24 C 1.38344 * 119.30519 * 0.02562 * 23 22 21 25 25 N 1.31912 * 121.07908 * 0.02562 * 24 23 22 26 26 C 1.31707 * 121.87360 * 359.67643 * 25 24 23 27 27 O 1.34471 * 106.39209 * 0.36701 * 20 19 18 28 28 N 1.20883 * 111.75365 * 359.75237 * 27 20 19 29 29 H 1.08998 * 109.46982 * 60.00846 * 1 2 3 30 30 H 1.09001 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47187 * 300.00220 * 1 2 3 32 32 H 1.08994 * 109.47647 * 59.99319 * 5 3 2 33 33 H 1.09007 * 109.46561 * 299.99097 * 5 3 2 34 34 H 1.08994 * 109.47192 * 59.99258 * 6 5 3 35 35 H 1.09006 * 109.46559 * 299.99667 * 6 5 3 36 36 H 0.96997 * 120.00075 * 179.97438 * 11 10 8 37 37 H 1.08003 * 128.09165 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.85616 * 0.02562 * 22 21 20 39 39 H 1.08005 * 120.34546 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.46094 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.71674 * 180.28740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4630 2.8188 -0.0011 8 6 6.1460 2.8551 1.1836 9 1 7.0656 2.2998 1.2940 10 6 5.6558 3.6073 2.2462 11 7 6.0767 3.3708 3.4674 12 14 4.3990 4.9540 1.9359 13 1 3.0330 4.4183 2.1646 14 1 4.6481 6.0868 2.8633 15 1 4.5167 5.4274 0.5334 16 6 6.1361 2.8536 -1.1682 17 8 5.5380 2.7262 -2.2186 18 6 7.6061 3.0412 -1.1706 19 6 8.4511 3.1317 -2.3078 20 6 9.6983 3.3015 -1.7750 21 6 10.9663 3.4556 -2.5198 22 6 12.1776 3.6171 -1.8371 23 6 13.3360 3.7566 -2.5808 24 6 13.2610 3.7329 -3.9620 25 7 12.1049 3.5802 -4.5786 26 6 10.9762 3.4378 -3.9150 27 8 9.5444 3.2951 -0.4392 28 7 8.3868 3.1509 -0.1223 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.9558 0.7809 -0.8907 33 1 3.9564 0.7807 0.8893 34 1 3.6107 3.2364 0.8888 35 1 3.6101 3.2359 -0.8912 36 1 5.7352 3.8955 4.2083 37 1 8.1732 3.0808 -3.3502 38 1 12.2074 3.6315 -0.7576 39 1 14.2888 3.8828 -2.0881 40 1 14.1637 3.8412 -4.5449 41 1 10.0498 3.3104 -4.4553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132666389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:58 Heat of formation + Delta-G solvation = -18.123612 kcal Electronic energy + Delta-G solvation = -29213.224871 eV Core-core repulsion = 24869.237481 eV Total energy + Delta-G solvation = -4343.987389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.95204 -41.70922 -40.98219 -40.70974 -37.80106 -37.12971 -35.16175 -34.69827 -34.30043 -33.11108 -32.54751 -30.75633 -28.87251 -27.24418 -26.56563 -25.23786 -25.01740 -23.80070 -23.15369 -21.98829 -20.93717 -19.76198 -18.91087 -18.78485 -18.24528 -18.21431 -17.87177 -17.65405 -17.58909 -17.13155 -16.81558 -16.33394 -15.97714 -15.72286 -15.31192 -14.91626 -14.77659 -14.68066 -14.55002 -14.52699 -14.15535 -14.09791 -13.97749 -13.66806 -13.11607 -13.03946 -12.87713 -12.76109 -12.45930 -12.02519 -11.93901 -11.83930 -11.75044 -11.70769 -11.37203 -11.35719 -10.90685 -10.61228 -10.53671 -9.97209 -9.53271 -8.61633 -6.25342 -0.48857 0.27055 0.36561 1.02054 1.08047 1.14449 1.22841 1.29723 1.53239 1.91782 2.05653 2.15607 2.34136 2.82049 2.86792 3.22522 3.39346 3.57725 3.64442 3.76055 3.85281 3.94419 3.99121 4.04918 4.12817 4.26006 4.27283 4.29172 4.32945 4.40913 4.55397 4.62142 4.65912 4.74001 4.77588 4.91867 5.13530 5.20995 5.21571 5.23032 5.67740 5.93498 6.17731 6.58075 6.75631 6.93511 7.09394 7.30415 7.47640 8.50987 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.002787 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.662838 B =10045.929894 C =11266.475005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.476 3.524 4 O -0.538 6.538 5 C -0.116 4.116 6 C 0.114 3.886 7 N -0.449 5.449 8 C -0.334 4.334 9 H 0.105 0.895 10 C 0.048 3.952 11 N -0.875 5.875 12 Si 0.907 3.093 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.273 1.273 16 C 0.541 3.459 17 O -0.594 6.594 18 C -0.032 4.032 19 C -0.169 4.169 20 C 0.001 3.999 21 C -0.081 4.081 22 C -0.059 4.059 23 C -0.158 4.158 24 C 0.104 3.896 25 N -0.502 5.502 26 C 0.123 3.877 27 O 0.125 5.875 28 N -0.310 5.310 29 H 0.064 0.936 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.283 0.717 37 H 0.199 0.801 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.192 0.808 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.110 -3.083 -9.440 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.429 6.429 5 C -0.154 4.154 6 C -0.009 4.009 7 N -0.168 5.168 8 C -0.462 4.462 9 H 0.122 0.878 10 C -0.159 4.159 11 N -0.511 5.511 12 Si 0.733 3.267 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.198 1.198 16 C 0.330 3.670 17 O -0.479 6.479 18 C -0.189 4.189 19 C -0.191 4.191 20 C -0.063 4.063 21 C -0.084 4.084 22 C -0.085 4.085 23 C -0.177 4.177 24 C -0.052 4.052 25 N -0.211 5.211 26 C -0.034 4.034 27 O 0.045 5.955 28 N -0.007 5.007 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.216 0.784 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.209 0.791 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.216 -2.863 -9.309 12.121 hybrid contribution -1.174 0.850 0.660 1.593 sum 6.042 -2.013 -8.649 10.741 Atomic orbital electron populations 1.23625 0.74447 1.06031 1.02626 1.86506 1.25371 1.32029 1.83606 1.23646 0.91805 0.81472 0.71036 1.90639 1.67829 1.37382 1.47020 1.21579 0.87411 0.99008 1.07403 1.21442 0.81314 0.95913 1.02242 1.43654 1.04795 1.62802 1.05594 1.19225 1.09542 1.30248 0.87230 0.87788 1.25737 0.98154 0.97375 0.94640 1.69695 1.43453 1.38742 0.99237 0.86439 0.80349 0.81102 0.78782 1.18771 1.20291 1.19773 1.17425 0.84816 0.81133 0.83579 1.90630 1.68935 1.56684 1.31633 1.23220 0.96401 1.08869 0.90370 1.22736 0.89569 1.05652 1.01111 1.22539 0.95441 1.04915 0.83355 1.18681 0.89141 1.06672 0.93935 1.22065 0.91158 0.93128 1.02166 1.22477 1.00018 1.00155 0.95088 1.23570 0.96292 0.92227 0.93155 1.67822 0.99174 1.13063 1.41028 1.23013 0.97747 0.93538 0.89141 1.84961 1.22667 1.64888 1.22967 1.74852 0.89241 1.14104 1.22533 0.91742 0.84394 0.92055 0.86245 0.86095 0.91566 0.90569 0.90660 0.78367 0.82884 0.80567 0.79128 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.58 10.57 -51.35 -0.54 -11.12 16 3 C 0.48 17.03 7.96 71.24 0.57 17.59 16 4 O -0.54 -21.95 15.73 21.95 0.35 -21.61 16 5 C -0.12 -4.34 6.14 29.85 0.18 -4.16 16 6 C 0.11 5.12 3.43 86.38 0.30 5.42 16 7 N -0.45 -21.95 2.14 -638.48 -1.36 -23.31 16 8 C -0.33 -17.62 8.29 84.13 0.70 -16.93 16 9 H 0.10 5.90 6.37 -2.91 -0.02 5.88 16 10 C 0.05 2.55 5.35 84.98 0.45 3.01 16 11 N -0.88 -48.15 13.95 21.69 0.30 -47.85 16 12 Si 0.91 43.35 24.89 68.60 1.71 45.05 16 13 H -0.26 -12.20 6.74 99.48 0.67 -11.53 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 16 C 0.54 25.86 7.65 86.89 0.66 26.52 16 17 O -0.59 -28.94 16.58 -3.84 -0.06 -29.00 16 18 C -0.03 -1.39 6.90 42.81 0.30 -1.10 16 19 C -0.17 -5.62 10.35 22.83 0.24 -5.38 16 20 C 0.00 0.03 7.17 24.45 0.18 0.20 16 21 C -0.08 -1.85 5.89 -20.00 -0.12 -1.96 16 22 C -0.06 -1.06 9.87 22.72 0.22 -0.84 16 23 C -0.16 -1.96 10.10 22.32 0.23 -1.74 16 24 C 0.10 1.44 11.17 84.71 0.95 2.39 16 25 N -0.50 -10.09 10.35 -194.76 -2.01 -12.10 16 26 C 0.12 2.60 10.76 85.02 0.91 3.52 16 27 O 0.12 4.48 11.09 67.52 0.75 5.23 16 28 N -0.31 -13.60 9.02 -48.97 -0.44 -14.04 16 29 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 33 H 0.12 4.44 8.14 -2.38 -0.02 4.42 16 34 H 0.07 3.14 3.29 -2.39 -0.01 3.13 16 35 H 0.08 3.50 7.46 -2.38 -0.02 3.48 16 36 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.20 5.45 7.49 -2.91 -0.02 5.43 16 38 H 0.15 2.45 8.03 -2.91 -0.02 2.43 16 39 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.17 3.12 7.17 -2.91 -0.02 3.10 16 Total: -1.00 -71.17 361.76 6.70 -64.47 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.06 Total: 15.99 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 6.96 Total: 28.29 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.52 Total: -97.31 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: 0.49 Total: -56.50 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.71 Total: 45.05 kcal Total: -71.17 6.70 -64.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132666389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.351 kcal (2) G-P(sol) polarization free energy of solvation -71.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds