Wall clock time and date at job start Wed Apr 1 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99704 * 2 1 4 4 C 1.50693 * 109.47226 * 269.99736 * 3 2 1 5 5 C 1.41385 * 126.79906 * 94.71580 * 4 3 2 6 6 C 1.35455 * 103.98533 * 179.88944 * 5 4 3 7 7 O 1.34039 * 106.44644 * 0.36667 * 6 5 4 8 8 N 1.20924 * 111.56463 * 359.75042 * 7 6 5 9 9 C 1.34779 * 120.00084 * 180.02562 * 2 1 3 10 10 O 1.21355 * 119.99839 * 181.01128 * 9 2 1 11 11 C 1.49352 * 120.00033 * 1.00662 * 9 2 1 12 12 O 1.21383 * 120.00074 * 4.07437 * 11 9 2 13 13 N 1.34770 * 120.00045 * 184.06935 * 11 9 2 14 14 C 1.39730 * 120.00265 * 173.27010 * 13 11 9 15 15 C 1.39024 * 120.04052 * 330.87826 * 14 13 11 16 16 C 1.38131 * 120.06437 * 180.02562 * 15 14 13 17 17 C 1.38184 * 120.14290 * 359.71876 * 16 15 14 18 18 C 1.38918 * 120.07886 * 0.55621 * 17 16 15 19 19 O 1.35754 * 120.02940 * 179.72065 * 18 17 16 20 20 C 1.34838 * 117.00005 * 173.99725 * 19 18 17 21 21 H 1.07996 * 119.99563 * 5.08661 * 20 19 18 22 22 C 1.38648 * 120.00015 * 185.08375 * 20 19 18 23 23 N 1.31560 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00405 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46675 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47260 * 119.99689 * 24 22 20 27 27 H 1.48496 * 109.47665 * 240.00397 * 24 22 20 28 28 C 1.38761 * 119.94258 * 359.44603 * 18 17 16 29 29 H 1.08995 * 109.46765 * 263.26049 * 1 2 3 30 30 H 1.08998 * 109.47250 * 23.26382 * 1 2 3 31 31 H 1.09000 * 109.47065 * 143.26694 * 1 2 3 32 32 H 1.08995 * 109.47065 * 30.00332 * 3 2 1 33 33 H 1.09005 * 109.47112 * 149.99890 * 3 2 1 34 34 H 1.08000 * 128.00959 * 0.02562 * 5 4 3 35 35 H 1.07995 * 126.77619 * 180.09216 * 6 5 4 36 36 H 0.96998 * 119.99967 * 353.27344 * 13 11 9 37 37 H 1.07999 * 119.96757 * 359.97438 * 15 14 13 38 38 H 1.07993 * 119.93061 * 180.02562 * 16 15 14 39 39 H 1.07998 * 119.96097 * 180.29863 * 17 16 15 40 40 H 0.97003 * 120.00347 * 179.97438 * 23 22 20 41 41 H 1.07990 * 120.07485 * 180.25628 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 6 1.6566 2.5883 -2.1882 6 6 2.2990 2.6538 -3.3789 7 8 3.3686 1.8524 -3.2775 8 7 3.4347 1.3353 -2.1864 9 6 2.1390 -1.1672 -0.0005 10 8 3.3524 -1.1672 0.0180 11 6 1.3924 -2.4605 -0.0238 12 8 0.1821 -2.4611 -0.1169 13 7 2.0624 -3.6270 0.0584 14 6 1.3604 -4.8291 0.1784 15 6 0.1168 -4.8498 0.7996 16 6 -0.5774 -6.0380 0.9190 17 6 -0.0414 -7.2083 0.4166 18 6 1.2033 -7.1955 -0.2002 19 8 1.7315 -8.3469 -0.6883 20 6 2.8824 -8.2459 -1.3836 21 1 3.3848 -7.2930 -1.4607 22 6 3.4208 -9.3654 -1.9994 23 7 2.8085 -10.5261 -1.9058 24 14 5.0155 -9.2258 -2.9621 25 1 5.5008 -7.8230 -2.9151 26 1 6.0360 -10.1223 -2.3621 27 1 4.7780 -9.6208 -4.3736 28 6 1.9037 -6.0039 -0.3219 29 1 -0.3633 -0.1206 1.0205 30 1 -0.3634 0.9441 -0.4059 31 1 -0.3633 -0.8236 -0.6146 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1385 0.5139 34 1 0.7504 3.0962 -1.8928 35 1 2.0048 3.2334 -4.2413 36 1 3.0321 -3.6320 0.0344 37 1 -0.3065 -3.9361 1.1900 38 1 -1.5435 -6.0515 1.4016 39 1 -0.5889 -8.1348 0.5072 40 1 3.1850 -11.3092 -2.3369 41 1 2.8696 -5.9908 -0.8047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252045428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:35 Heat of formation + Delta-G solvation = 27.007526 kcal Electronic energy + Delta-G solvation = -28964.976711 eV Core-core repulsion = 24622.946355 eV Total energy + Delta-G solvation = -4342.030356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.28691 -41.13173 -39.44793 -38.45626 -36.83236 -36.33340 -34.54752 -33.93866 -32.26339 -32.03432 -29.61488 -29.01116 -28.58237 -27.04782 -25.40557 -24.37180 -23.51985 -22.05402 -21.87023 -20.97182 -19.93118 -18.36234 -18.14373 -18.03545 -17.86374 -17.24736 -16.84978 -16.39631 -15.77456 -15.51472 -15.27829 -15.00338 -14.82599 -14.32990 -14.02606 -13.98987 -13.82495 -13.62083 -13.32546 -13.16904 -13.06803 -12.83216 -12.60885 -12.41381 -11.85649 -11.65516 -11.56940 -11.40081 -11.10492 -10.99928 -10.82304 -10.67964 -10.44098 -10.03647 -9.96483 -9.56372 -9.38473 -9.12582 -8.83284 -7.81951 -7.23210 -6.47156 -4.07066 1.09934 1.18194 1.63943 2.08925 2.30332 2.39486 2.92451 3.09884 3.14029 3.15168 3.19523 3.36134 3.76462 3.95447 4.08772 4.25014 4.53639 4.71442 4.74786 4.87261 4.94710 5.05790 5.16348 5.23710 5.24462 5.36422 5.57868 5.58066 5.66339 5.87623 5.92668 6.02331 6.14805 6.17350 6.50881 6.63743 6.82880 6.86002 7.05989 7.22229 7.34520 7.38463 7.61900 7.69996 7.94242 7.95293 7.99140 8.98432 9.66483 10.70598 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.002574 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.800132 B =10875.616862 C =12601.669416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.587 5.587 3 C 0.193 3.807 4 C -0.013 4.013 5 C -0.225 4.225 6 C -0.062 4.062 7 O 0.107 5.893 8 N -0.337 5.337 9 C 0.509 3.491 10 O -0.504 6.504 11 C 0.507 3.493 12 O -0.495 6.495 13 N -0.633 5.633 14 C 0.175 3.825 15 C -0.208 4.208 16 C -0.062 4.062 17 C -0.196 4.196 18 C 0.169 3.831 19 O -0.174 6.174 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.041 3.959 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.252 4.252 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.217 0.783 36 H 0.419 0.581 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.270 0.730 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 27.145 1.720 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.322 5.322 3 C 0.069 3.931 4 C -0.173 4.173 5 C -0.247 4.247 6 C -0.143 4.143 7 O 0.036 5.964 8 N -0.037 5.037 9 C 0.291 3.709 10 O -0.378 6.378 11 C 0.289 3.711 12 O -0.370 6.370 13 N -0.278 5.278 14 C 0.082 3.918 15 C -0.229 4.229 16 C -0.081 4.081 17 C -0.216 4.216 18 C 0.114 3.886 19 O -0.077 6.077 20 C -0.469 4.469 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.274 4.274 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.190 0.810 35 H 0.233 0.767 36 H 0.256 0.744 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.693 25.872 1.806 26.196 hybrid contribution 0.463 0.777 -0.592 1.081 sum -3.230 26.648 1.214 26.871 Atomic orbital electron populations 1.22543 0.76990 1.04687 1.03939 1.47644 1.08420 1.04316 1.71799 1.19737 0.99506 0.85052 0.88773 1.24009 0.93683 0.99656 0.99965 1.22743 1.03792 1.04155 0.94043 1.26077 0.89295 0.97703 1.01249 1.84911 1.39590 1.44541 1.27336 1.74012 1.21688 1.15742 0.92274 1.20193 0.87567 0.85169 0.77981 1.90805 1.13108 1.87035 1.46837 1.19954 0.87714 0.85010 0.78465 1.90651 1.13370 1.86387 1.46616 1.43176 1.11373 1.04312 1.68921 1.17424 0.93229 0.83426 0.97749 1.20583 0.96089 0.98739 1.07489 1.20523 0.98441 0.91419 0.97687 1.20297 0.95385 0.98829 1.07105 1.19049 0.91538 0.85975 0.91999 1.84009 1.37724 1.25294 1.60651 1.21350 0.98151 0.97259 1.30170 0.89076 1.25281 0.99561 0.94365 0.97182 1.70045 1.38631 0.99525 1.41366 0.85659 0.79967 0.78879 0.79027 1.19059 1.20082 1.20090 1.20813 1.04079 0.91700 1.10783 0.91802 0.91499 0.86842 0.87354 0.87661 0.81000 0.76661 0.74387 0.85887 0.86413 0.86212 0.92010 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 9.59 59.85 0.57 1.09 16 2 N -0.59 -6.27 2.86 -183.51 -0.52 -6.80 16 3 C 0.19 1.68 5.97 -5.20 -0.03 1.65 16 4 C -0.01 -0.13 6.91 -82.10 -0.57 -0.70 16 5 C -0.23 -1.48 11.12 -39.38 -0.44 -1.92 16 6 C -0.06 -0.38 12.30 29.74 0.37 -0.02 16 7 O 0.11 1.10 11.20 17.18 0.19 1.29 16 8 N -0.34 -4.26 12.07 33.42 0.40 -3.85 16 9 C 0.51 7.11 7.74 -11.63 -0.09 7.02 16 10 O -0.50 -8.11 16.06 5.49 0.09 -8.02 16 11 C 0.51 7.78 7.54 -11.63 -0.09 7.70 16 12 O -0.49 -7.89 10.57 5.47 0.06 -7.83 16 13 N -0.63 -10.41 5.34 -10.31 -0.06 -10.46 16 14 C 0.17 3.34 6.35 -83.77 -0.53 2.81 16 15 C -0.21 -3.83 8.67 -39.33 -0.34 -4.17 16 16 C -0.06 -1.12 10.03 -39.64 -0.40 -1.52 16 17 C -0.20 -4.11 9.99 -39.35 -0.39 -4.51 16 18 C 0.17 4.06 6.64 -39.14 -0.26 3.80 16 19 O -0.17 -4.91 9.76 0.01 0.00 -4.91 16 20 C -0.39 -10.94 9.49 30.88 0.29 -10.64 16 21 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 22 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 24 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 C -0.25 -5.49 9.07 -39.19 -0.36 -5.84 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.38 8.02 -51.93 -0.42 -0.03 16 31 H 0.11 1.25 5.30 -51.99 -0.28 0.97 16 32 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.11 1.04 7.41 -51.93 -0.38 0.66 16 34 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.42 6.33 8.28 -40.82 -0.34 6.00 16 37 H 0.12 2.12 6.14 -52.49 -0.32 1.80 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -34.98 362.02 -4.98 -39.96 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -3.97 Total: 8.16 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.36 Total: -4.23 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.58 Total: -45.51 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.34 Total: -19.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.98 -4.98 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252045428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.969 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds