Wall clock time and date at job start Wed Apr 1 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00136 * 2 1 4 4 O 1.20820 * 119.99876 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99752 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47006 * 180.02562 * 5 3 2 7 7 C 1.36887 * 120.00402 * 263.46426 * 6 5 3 8 8 H 1.07997 * 120.00315 * 133.48944 * 7 6 5 9 9 C 1.39040 * 120.00130 * 313.49524 * 7 6 5 10 10 N 1.31380 * 119.99487 * 344.71120 * 9 7 6 11 11 Si 1.86797 * 120.00204 * 164.70503 * 9 7 6 12 12 H 1.48506 * 109.46674 * 60.00459 * 11 9 7 13 13 H 1.48500 * 109.47011 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47600 * 300.00402 * 11 9 7 15 15 C 1.34776 * 120.00255 * 83.46537 * 6 5 3 16 16 O 1.21626 * 119.99803 * 359.63754 * 15 6 5 17 17 C 1.47525 * 120.00243 * 179.36318 * 15 6 5 18 18 C 1.39781 * 120.08353 * 326.98703 * 17 15 6 19 19 C 1.37703 * 119.91016 * 179.72089 * 18 17 15 20 20 C 1.39065 * 120.08314 * 0.55519 * 19 18 17 21 21 N 1.39836 * 119.91236 * 179.74509 * 20 19 18 22 22 C 1.37745 * 126.52424 * 130.00500 * 21 20 19 23 23 C 1.34405 * 106.90537 * 180.02562 * 22 21 20 24 24 N 1.34405 * 108.34551 * 359.97438 * 23 22 21 25 25 C 1.30997 * 109.36762 * 359.72017 * 24 23 22 26 26 O 1.35494 * 125.78546 * 180.26558 * 25 24 23 27 27 C 1.39071 * 120.17459 * 359.72088 * 20 19 18 28 28 C 1.37686 * 120.08539 * 359.97438 * 27 20 19 29 29 H 1.09006 * 109.46961 * 299.99870 * 1 2 3 30 30 H 1.09002 * 109.47460 * 59.99348 * 1 2 3 31 31 H 1.08997 * 109.47583 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47366 * 60.00196 * 5 3 2 33 33 H 1.08995 * 109.47365 * 300.00566 * 5 3 2 34 34 H 0.96998 * 119.99577 * 179.97438 * 10 9 7 35 35 H 1.08000 * 120.04721 * 359.97438 * 18 17 15 36 36 H 1.07997 * 119.95443 * 180.29679 * 19 18 17 37 37 H 1.07998 * 126.54505 * 0.02562 * 22 21 20 38 38 H 1.07990 * 125.82449 * 180.02562 * 23 22 21 39 39 H 0.96700 * 114.00322 * 270.20630 * 26 25 24 40 40 H 1.08000 * 119.95784 * 179.97438 * 27 20 19 41 41 H 1.07999 * 120.04587 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.3047 3.2985 -1.1773 8 1 3.9088 4.2786 -1.3986 9 6 5.1426 2.6653 -2.0885 10 7 5.8595 1.6306 -1.7125 11 14 5.2486 3.2857 -3.8473 12 1 5.7178 4.6947 -3.8476 13 1 6.2046 2.4450 -4.6119 14 1 3.9076 3.2104 -4.4806 15 6 4.0460 3.3628 1.1602 16 8 3.7527 2.8148 2.2056 17 6 4.4778 4.7734 1.1625 18 6 5.4242 5.2180 0.2348 19 6 5.8204 6.5368 0.2365 20 6 5.2890 7.4231 1.1670 21 7 5.6979 8.7604 1.1690 22 6 4.8792 9.8680 1.1790 23 6 5.6809 10.9467 1.1766 24 7 6.9571 10.5252 1.1659 25 6 6.9821 9.2155 1.1677 26 8 8.0961 8.4443 1.1641 27 6 4.3515 6.9833 2.0953 28 6 3.9456 5.6676 2.0960 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7804 0.8890 34 1 6.4437 1.1886 -2.3483 35 1 5.8410 4.5291 -0.4849 36 1 6.5480 6.8821 -0.4830 37 1 3.7992 9.8694 1.1873 38 1 5.3553 11.9763 1.1830 39 1 8.4177 8.2218 0.2796 40 1 3.9413 7.6745 2.8166 41 1 3.2172 5.3268 2.8169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293845679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:25 Heat of formation + Delta-G solvation = -42.712264 kcal Electronic energy + Delta-G solvation = -29924.506607 eV Core-core repulsion = 25579.452973 eV Total energy + Delta-G solvation = -4345.053633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26586 -40.05091 -39.31465 -37.81667 -37.30302 -35.87212 -35.03817 -33.88897 -31.91543 -30.88798 -29.93280 -28.77808 -28.34043 -26.52253 -25.25259 -23.51066 -22.72389 -21.39368 -21.14452 -20.74266 -19.64841 -18.81148 -18.04975 -17.19922 -17.10354 -16.60250 -15.87684 -15.77302 -15.48646 -15.28642 -14.94750 -14.72900 -14.45763 -14.18936 -13.96413 -13.85058 -13.42475 -13.29874 -13.10572 -12.92977 -12.80736 -12.34391 -12.11983 -11.92475 -11.75053 -11.57956 -11.48716 -11.20565 -10.98711 -10.90903 -10.61342 -10.34715 -10.26689 -10.02657 -9.86586 -9.44190 -8.91148 -8.76190 -8.57428 -8.24227 -7.84136 -6.72981 -4.49149 0.94801 1.63882 1.93145 2.43220 2.89643 2.92532 2.93906 3.04157 3.05098 3.10945 3.52262 3.83420 3.87064 4.20928 4.41584 4.70771 4.77519 4.99505 5.04917 5.24246 5.36469 5.42928 5.43881 5.50407 5.58503 5.63208 5.70676 5.80899 5.89521 6.01224 6.12352 6.22401 6.41841 6.48348 6.54468 6.57482 6.77537 6.89395 6.91715 7.09860 7.17627 7.51288 7.63190 7.84861 8.01388 8.43045 8.70330 9.05178 9.51278 10.30786 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.003400 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.116873 B = 8234.461668 C = 9487.523838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.445 3.555 4 O -0.504 6.504 5 C 0.133 3.867 6 N -0.416 5.416 7 C -0.345 4.345 8 H 0.092 0.908 9 C 0.047 3.953 10 N -0.854 5.854 11 Si 0.914 3.086 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.270 1.270 15 C 0.529 3.471 16 O -0.588 6.588 17 C -0.082 4.082 18 C -0.043 4.043 19 C -0.131 4.131 20 C 0.112 3.888 21 N -0.411 5.411 22 C -0.037 4.037 23 C -0.019 4.019 24 N -0.486 5.486 25 C 0.382 3.618 26 O -0.438 6.438 27 C -0.130 4.130 28 C -0.062 4.062 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.278 0.722 35 H 0.174 0.826 36 H 0.122 0.878 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.400 0.600 40 H 0.127 0.873 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 5.855 -0.181 6.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.287 3.713 4 O -0.390 6.390 5 C 0.007 3.993 6 N -0.134 5.134 7 C -0.473 4.473 8 H 0.110 0.890 9 C -0.161 4.161 10 N -0.488 5.488 11 Si 0.740 3.260 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.195 1.195 15 C 0.319 3.681 16 O -0.473 6.473 17 C -0.085 4.085 18 C -0.062 4.062 19 C -0.151 4.151 20 C 0.021 3.979 21 N -0.102 5.102 22 C -0.168 4.168 23 C -0.166 4.166 24 N -0.214 5.214 25 C 0.084 3.916 26 O -0.238 6.238 27 C -0.149 4.149 28 C -0.082 4.082 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.191 0.809 36 H 0.140 0.860 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.257 0.743 40 H 0.145 0.855 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.939 6.071 0.828 6.427 hybrid contribution -0.895 -0.318 -1.536 1.806 sum -2.834 5.754 -0.708 6.453 Atomic orbital electron populations 1.23103 0.77950 1.02711 1.02022 1.86545 1.22327 1.34716 1.84877 1.25275 0.93564 0.80929 0.71551 1.90581 1.67032 1.36431 1.44993 1.20926 0.84141 0.87669 1.06563 1.42774 1.56346 1.08461 1.05810 1.19384 1.28307 1.04497 0.95069 0.89008 1.25562 0.93689 0.96461 1.00383 1.69859 1.22377 1.20768 1.35801 0.86181 0.78755 0.79308 0.81804 1.19193 1.20435 1.19459 1.18238 0.79876 0.86373 0.83642 1.90666 1.54202 1.70432 1.31975 1.20078 0.97791 0.94467 0.96134 1.22196 0.93507 0.94508 0.95957 1.20917 1.02026 0.93935 0.98214 1.17847 1.00159 0.81525 0.98405 1.43580 1.06972 1.05344 1.54258 1.22761 0.97790 0.84980 1.11267 1.22155 0.87614 0.99091 1.07692 1.70539 1.22886 1.06285 1.21738 1.20551 0.79282 0.86180 1.05613 1.84906 1.36750 1.68201 1.33961 1.20778 0.99200 0.96406 0.98540 1.21090 0.98414 0.91429 0.97283 0.92468 0.92462 0.88825 0.84784 0.87993 0.91157 0.80895 0.86004 0.80163 0.80513 0.74285 0.85512 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.71 10.56 -39.26 -0.41 -7.13 16 3 C 0.45 9.55 7.98 36.00 0.29 9.84 16 4 O -0.50 -12.03 16.02 -18.75 -0.30 -12.33 16 5 C 0.13 2.91 5.42 -5.20 -0.03 2.88 16 6 N -0.42 -9.71 2.01 -117.28 -0.24 -9.94 16 7 C -0.34 -7.82 5.90 -15.00 -0.09 -7.91 16 8 H 0.09 2.09 6.96 -52.49 -0.37 1.72 16 9 C 0.05 1.04 4.64 -17.45 -0.08 0.96 16 10 N -0.85 -19.48 11.87 55.50 0.66 -18.82 16 11 Si 0.91 17.37 29.58 -169.99 -5.03 12.34 16 12 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 13 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 15 C 0.53 12.42 7.14 -12.47 -0.09 12.33 16 16 O -0.59 -14.96 16.47 5.25 0.09 -14.87 16 17 C -0.08 -1.65 5.48 -104.95 -0.57 -2.22 16 18 C -0.04 -0.79 7.96 -39.20 -0.31 -1.10 16 19 C -0.13 -2.07 9.38 -39.47 -0.37 -2.44 16 20 C 0.11 1.71 5.98 -83.59 -0.50 1.21 16 21 N -0.41 -5.88 2.89 -62.14 -0.18 -6.06 16 22 C -0.04 -0.45 11.30 -16.25 -0.18 -0.63 16 23 C -0.02 -0.23 11.84 -17.78 -0.21 -0.44 16 24 N -0.49 -7.32 11.27 -14.64 -0.17 -7.48 16 25 C 0.38 5.69 8.85 -88.85 -0.79 4.91 16 26 O -0.44 -5.86 13.24 -18.18 -0.24 -6.10 16 27 C -0.13 -1.98 9.67 -39.47 -0.38 -2.36 16 28 C -0.06 -1.10 9.59 -39.20 -0.38 -1.48 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.13 2.95 6.12 -51.93 -0.32 2.63 16 33 H 0.10 2.21 7.63 -51.93 -0.40 1.81 16 34 H 0.28 6.01 8.31 -40.82 -0.34 5.67 16 35 H 0.17 3.42 5.46 -52.49 -0.29 3.14 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.40 3.38 9.06 45.56 0.41 3.80 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 2.31 7.97 -52.49 -0.42 1.89 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -30.97 365.08 -6.41 -37.38 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -3.47 Total: 12.38 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: -2.63 Total: 15.12 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.08 Total: -42.30 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.87 Total: -40.42 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.97 -6.41 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293845679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.332 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds