Wall clock time and date at job start Wed Apr 1 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00136 * 2 1 4 4 O 1.20820 * 119.99876 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99752 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47006 * 180.02562 * 5 3 2 7 7 C 1.36887 * 120.00402 * 263.46426 * 6 5 3 8 8 H 1.07997 * 120.00315 * 133.48944 * 7 6 5 9 9 C 1.39040 * 120.00130 * 313.49524 * 7 6 5 10 10 N 1.31380 * 119.99487 * 344.71120 * 9 7 6 11 11 Si 1.86797 * 120.00204 * 164.70503 * 9 7 6 12 12 H 1.48506 * 109.46674 * 60.00459 * 11 9 7 13 13 H 1.48500 * 109.47011 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47600 * 300.00402 * 11 9 7 15 15 C 1.34776 * 120.00255 * 83.46537 * 6 5 3 16 16 O 1.21626 * 119.99803 * 359.63754 * 15 6 5 17 17 C 1.47525 * 120.00243 * 179.36318 * 15 6 5 18 18 C 1.39781 * 120.08353 * 326.98703 * 17 15 6 19 19 C 1.37703 * 119.91016 * 179.72089 * 18 17 15 20 20 C 1.39065 * 120.08314 * 0.55519 * 19 18 17 21 21 N 1.39836 * 119.91236 * 179.74509 * 20 19 18 22 22 C 1.37745 * 126.52424 * 130.00500 * 21 20 19 23 23 C 1.34405 * 106.90537 * 180.02562 * 22 21 20 24 24 N 1.34405 * 108.34551 * 359.97438 * 23 22 21 25 25 C 1.30997 * 109.36762 * 359.72017 * 24 23 22 26 26 O 1.35494 * 125.78546 * 180.26558 * 25 24 23 27 27 C 1.39071 * 120.17459 * 359.72088 * 20 19 18 28 28 C 1.37686 * 120.08539 * 359.97438 * 27 20 19 29 29 H 1.09006 * 109.46961 * 299.99870 * 1 2 3 30 30 H 1.09002 * 109.47460 * 59.99348 * 1 2 3 31 31 H 1.08997 * 109.47583 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47366 * 60.00196 * 5 3 2 33 33 H 1.08995 * 109.47365 * 300.00566 * 5 3 2 34 34 H 0.96998 * 119.99577 * 179.97438 * 10 9 7 35 35 H 1.08000 * 120.04721 * 359.97438 * 18 17 15 36 36 H 1.07997 * 119.95443 * 180.29679 * 19 18 17 37 37 H 1.07998 * 126.54505 * 0.02562 * 22 21 20 38 38 H 1.07990 * 125.82449 * 180.02562 * 23 22 21 39 39 H 0.96700 * 114.00322 * 270.20630 * 26 25 24 40 40 H 1.08000 * 119.95784 * 179.97438 * 27 20 19 41 41 H 1.07999 * 120.04587 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.3047 3.2985 -1.1773 8 1 3.9088 4.2786 -1.3986 9 6 5.1426 2.6653 -2.0885 10 7 5.8595 1.6306 -1.7125 11 14 5.2486 3.2857 -3.8473 12 1 5.7178 4.6947 -3.8476 13 1 6.2046 2.4450 -4.6119 14 1 3.9076 3.2104 -4.4806 15 6 4.0460 3.3628 1.1602 16 8 3.7527 2.8148 2.2056 17 6 4.4778 4.7734 1.1625 18 6 5.4242 5.2180 0.2348 19 6 5.8204 6.5368 0.2365 20 6 5.2890 7.4231 1.1670 21 7 5.6979 8.7604 1.1690 22 6 4.8792 9.8680 1.1790 23 6 5.6809 10.9467 1.1766 24 7 6.9571 10.5252 1.1659 25 6 6.9821 9.2155 1.1677 26 8 8.0961 8.4443 1.1641 27 6 4.3515 6.9833 2.0953 28 6 3.9456 5.6676 2.0960 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7804 0.8890 34 1 6.4437 1.1886 -2.3483 35 1 5.8410 4.5291 -0.4849 36 1 6.5480 6.8821 -0.4830 37 1 3.7992 9.8694 1.1873 38 1 5.3553 11.9763 1.1830 39 1 8.4177 8.2218 0.2796 40 1 3.9413 7.6745 2.8166 41 1 3.2172 5.3268 2.8169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293845679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:24 Heat of formation + Delta-G solvation = -63.328264 kcal Electronic energy + Delta-G solvation = -29925.400583 eV Core-core repulsion = 25579.452973 eV Total energy + Delta-G solvation = -4345.947610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.29979 -41.70357 -40.83633 -39.29823 -38.29222 -37.51177 -36.79718 -35.09813 -33.66186 -32.22095 -31.32776 -29.96688 -29.57378 -27.92278 -26.93084 -24.85132 -23.98314 -22.65309 -22.22556 -22.12930 -21.30660 -19.96397 -19.64819 -18.76421 -18.30848 -18.20115 -17.41590 -17.09384 -16.95087 -16.70501 -16.50296 -15.94478 -15.72560 -15.39599 -15.38803 -15.25920 -14.62021 -14.58176 -14.43557 -14.41715 -14.27267 -13.78278 -13.50639 -13.32014 -13.14897 -12.95955 -12.86866 -12.84567 -12.64025 -12.23982 -12.12737 -11.80143 -11.61883 -11.40580 -11.19144 -11.07333 -10.64490 -10.07958 -9.73216 -9.60716 -9.37229 -8.42987 -6.24978 -0.36191 0.32752 0.86277 1.21797 1.37910 1.41874 1.48974 1.54091 1.57938 1.93848 1.99775 2.29968 2.66446 2.79776 2.86616 3.05293 3.76318 3.81246 3.84584 3.97583 4.06728 4.25504 4.27896 4.30311 4.32544 4.39725 4.46746 4.60270 4.63649 4.65562 4.71375 4.92079 4.96187 5.14109 5.29555 5.31437 5.38680 5.51165 5.55917 5.66371 5.78022 5.93048 6.27340 6.67009 6.77500 6.85715 6.96840 7.29274 7.76666 8.62104 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.003400 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.116873 B = 8234.461668 C = 9487.523838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.130 3.870 6 N -0.424 5.424 7 C -0.354 4.354 8 H 0.088 0.912 9 C 0.022 3.978 10 N -0.878 5.878 11 Si 0.971 3.029 12 H -0.255 1.255 13 H -0.276 1.276 14 H -0.277 1.277 15 C 0.514 3.486 16 O -0.622 6.622 17 C -0.113 4.113 18 C -0.047 4.047 19 C -0.124 4.124 20 C 0.124 3.876 21 N -0.418 5.418 22 C -0.036 4.036 23 C -0.023 4.023 24 N -0.510 5.510 25 C 0.367 3.633 26 O -0.450 6.450 27 C -0.117 4.117 28 C -0.066 4.066 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.212 0.788 38 H 0.209 0.791 39 H 0.419 0.581 40 H 0.157 0.843 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 7.659 -0.960 8.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.422 6.422 5 C 0.005 3.995 6 N -0.141 5.141 7 C -0.481 4.481 8 H 0.106 0.894 9 C -0.184 4.184 10 N -0.513 5.513 11 Si 0.794 3.206 12 H -0.179 1.179 13 H -0.201 1.201 14 H -0.202 1.202 15 C 0.305 3.695 16 O -0.510 6.510 17 C -0.116 4.116 18 C -0.066 4.066 19 C -0.144 4.144 20 C 0.033 3.967 21 N -0.110 5.110 22 C -0.165 4.165 23 C -0.168 4.168 24 N -0.240 5.240 25 C 0.069 3.931 26 O -0.253 6.253 27 C -0.137 4.137 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.228 0.772 38 H 0.226 0.774 39 H 0.278 0.722 40 H 0.174 0.826 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.382 7.874 0.028 8.226 hybrid contribution -0.776 -0.852 -1.258 1.706 sum -3.158 7.022 -1.230 7.797 Atomic orbital electron populations 1.23527 0.75144 1.05721 1.02091 1.86510 1.24958 1.32688 1.84083 1.25016 0.93328 0.81391 0.70937 1.90556 1.67559 1.37525 1.46534 1.20880 0.85046 0.87492 1.06110 1.42968 1.56184 1.08779 1.06132 1.19450 1.28887 1.04706 0.95083 0.89404 1.26148 0.92896 0.96354 1.03043 1.69926 1.22842 1.21627 1.36913 0.85317 0.78193 0.79489 0.77614 1.17860 1.20119 1.20207 1.18869 0.79490 0.87878 0.83215 1.90608 1.55974 1.71542 1.32906 1.20002 0.99907 0.93227 0.98494 1.21924 0.93633 0.95442 0.95608 1.21053 1.01985 0.92735 0.98588 1.17871 0.99138 0.82194 0.97531 1.43641 1.07291 1.05092 1.54975 1.23359 0.99060 0.84020 1.10020 1.22748 0.86594 1.00694 1.06755 1.70555 1.24572 1.06472 1.22370 1.20741 0.79677 0.86426 1.06265 1.84856 1.36558 1.68058 1.35837 1.20980 0.98503 0.95593 0.98579 1.21117 0.98505 0.92202 0.96709 0.92631 0.92239 0.84342 0.85046 0.88491 0.90857 0.82661 0.83619 0.77167 0.77429 0.72157 0.82552 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.30 10.56 -51.43 -0.54 -13.84 16 3 C 0.45 19.80 7.98 71.24 0.57 20.37 16 4 O -0.53 -26.04 16.02 21.98 0.35 -25.68 16 5 C 0.13 5.96 5.42 85.63 0.46 6.42 16 6 N -0.42 -20.53 2.01 -643.22 -1.29 -21.82 16 7 C -0.35 -16.44 5.90 84.10 0.50 -15.94 16 8 H 0.09 4.08 6.96 -2.91 -0.02 4.06 16 9 C 0.02 0.96 4.64 84.95 0.39 1.36 16 10 N -0.88 -40.71 11.87 21.68 0.26 -40.45 16 11 Si 0.97 35.21 29.58 68.60 2.03 37.24 16 12 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 13 H -0.28 -9.83 7.11 99.48 0.71 -9.12 16 14 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 15 C 0.51 25.20 7.14 86.69 0.62 25.82 16 16 O -0.62 -33.22 16.47 -4.11 -0.07 -33.28 16 17 C -0.11 -4.68 5.48 -20.08 -0.11 -4.79 16 18 C -0.05 -1.75 7.96 22.52 0.18 -1.57 16 19 C -0.12 -3.73 9.38 22.34 0.21 -3.52 16 20 C 0.12 3.53 5.98 38.26 0.23 3.76 16 21 N -0.42 -10.77 2.89 -461.38 -1.33 -12.11 16 22 C -0.04 -0.73 11.30 82.89 0.94 0.21 16 23 C -0.02 -0.48 11.84 83.42 0.99 0.51 16 24 N -0.51 -14.19 11.27 -313.82 -3.54 -17.73 16 25 C 0.37 10.13 8.85 179.73 1.59 11.72 16 26 O -0.45 -11.30 13.24 -87.95 -1.16 -12.46 16 27 C -0.12 -3.33 9.67 22.34 0.22 -3.12 16 28 C -0.07 -2.30 9.59 22.52 0.22 -2.09 16 29 H 0.05 1.52 8.13 -2.38 -0.02 1.50 16 30 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.13 6.00 6.12 -2.38 -0.01 5.99 16 33 H 0.10 4.44 7.63 -2.39 -0.02 4.42 16 34 H 0.28 12.25 8.31 -92.71 -0.77 11.48 16 35 H 0.16 6.30 5.46 -2.91 -0.02 6.28 16 36 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.21 2.81 8.06 -2.92 -0.02 2.79 16 39 H 0.42 6.37 9.06 -74.06 -0.67 5.70 16 40 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.13 4.62 7.97 -2.91 -0.02 4.60 16 Total: -1.00 -68.43 365.08 3.33 -65.10 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.44 Total: 33.95 kcal Atomic # 6 Polarization: 32.90 SS G_CDS: 8.19 Total: 41.09 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -5.91 Total: -92.11 kcal Atomic # 8 Polarization: -83.85 SS G_CDS: -1.42 Total: -85.27 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -68.43 3.33 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293845679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.771 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds