Wall clock time and date at job start Wed Apr 1 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38023 * 119.40527 * 2 1 4 4 C 1.39099 * 120.98209 * 359.97438 * 3 2 1 5 5 C 1.37844 * 119.73504 * 180.02562 * 4 3 2 6 6 C 1.38763 * 120.65603 * 359.95394 * 5 4 3 7 7 C 1.36701 * 120.54214 * 0.02562 * 6 5 4 8 8 C 1.39629 * 119.72525 * 0.02562 * 7 6 5 9 9 C 1.47063 * 121.19551 * 179.97438 * 8 7 6 10 10 N 1.37885 * 120.84784 * 0.02730 * 9 8 7 11 11 C 1.47963 * 111.00015 * 309.61715 * 10 9 8 12 12 C 1.53937 * 86.18022 * 137.58368 * 11 10 9 13 13 O 1.42892 * 113.73819 * 90.63814 * 12 11 10 14 14 C 1.50701 * 113.73022 * 221.81394 * 12 11 10 15 15 H 1.07998 * 120.00501 * 358.10223 * 14 12 11 16 16 C 1.37883 * 120.00072 * 178.09830 * 14 12 11 17 17 N 1.31508 * 120.00197 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 119.99567 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47002 * 90.00055 * 18 16 14 20 20 H 1.48502 * 109.46875 * 209.99769 * 18 16 14 21 21 H 1.48496 * 109.47542 * 329.99495 * 18 16 14 22 22 C 1.48304 * 111.00477 * 48.96797 * 10 9 8 23 23 C 1.36940 * 118.30699 * 180.29402 * 9 8 7 24 24 N 1.48037 * 119.92629 * 179.70741 * 23 9 8 25 25 O 1.21798 * 119.99661 * 0.02562 * 24 23 9 26 26 O 1.21789 * 120.00048 * 180.02562 * 24 23 9 27 27 C 1.34388 * 119.40656 * 180.02562 * 2 1 3 28 28 O 1.21987 * 119.06274 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47580 * 89.99553 * 1 2 3 30 30 H 1.09004 * 109.47325 * 209.99950 * 1 2 3 31 31 H 1.09004 * 109.47204 * 330.00111 * 1 2 3 32 32 H 1.07998 * 120.12973 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.66895 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.72910 * 180.02562 * 6 5 4 35 35 H 1.07995 * 120.13920 * 180.02562 * 7 6 5 36 36 H 1.08999 * 113.75515 * 23.26264 * 11 10 9 37 37 H 1.09004 * 113.75730 * 251.89810 * 11 10 9 38 38 H 0.96697 * 114.00344 * 181.89443 * 13 12 11 39 39 H 0.97006 * 120.00250 * 180.02562 * 17 16 14 40 40 H 1.09003 * 113.85755 * 108.14711 * 22 10 9 41 41 H 1.08998 * 113.75953 * 336.68152 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.2024 0.0000 4 6 1.4553 2.4117 -0.0005 5 6 2.1581 3.5976 -0.0011 6 6 3.5457 3.5976 -0.0001 7 6 4.2405 2.4204 0.0009 8 6 3.5481 1.2078 0.0003 9 6 4.2627 -0.0775 0.0008 10 7 5.6409 -0.1201 0.0023 11 6 6.1994 0.7442 -1.0610 12 6 7.2344 1.1900 -0.0123 13 8 8.4217 0.3950 -0.0018 14 6 7.5185 2.6698 -0.0316 15 1 7.0341 3.3033 -0.7598 16 6 8.3970 3.2151 0.8806 17 7 8.6446 4.5065 0.8641 18 14 9.2354 2.1193 2.1399 19 1 10.5159 1.6146 1.5824 20 1 9.5062 2.9003 3.3735 21 1 8.3506 0.9718 2.4649 22 6 6.1992 0.7716 1.0475 23 6 3.5246 -1.2309 -0.0060 24 7 4.2072 -2.5445 -0.0123 25 8 5.4240 -2.5985 -0.0111 26 8 3.5521 -3.5711 -0.0188 27 6 2.1249 -1.1707 -0.0005 28 8 1.4869 -2.2105 -0.0015 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.3754 2.4215 -0.0005 33 1 1.6234 4.5358 -0.0019 34 1 4.0812 4.5355 -0.0001 35 1 5.3204 2.4280 0.0020 36 1 5.5257 1.5399 -1.3790 37 1 6.6301 0.1910 -1.8955 38 1 9.0622 0.6536 0.6749 39 1 9.2630 4.8901 1.5057 40 1 6.6300 0.2403 1.8963 41 1 5.5256 1.5753 1.3447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307101856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:37 Heat of formation + Delta-G solvation = 66.811881 kcal Electronic energy + Delta-G solvation = -31896.668608 eV Core-core repulsion = 27556.364298 eV Total energy + Delta-G solvation = -4340.304310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49287 -41.19473 -40.54528 -38.65357 -36.19670 -35.99251 -35.55632 -33.68734 -32.78118 -31.10743 -30.12781 -29.07976 -27.60076 -26.12559 -25.97899 -24.64636 -23.20444 -22.95485 -21.53414 -19.96661 -19.49075 -18.83790 -17.89230 -17.62026 -17.16670 -17.09481 -16.67923 -16.44168 -16.19186 -16.13216 -15.16239 -15.04544 -14.69101 -14.47151 -14.26256 -13.65570 -13.58443 -13.40732 -13.31443 -13.04967 -12.61927 -12.43106 -12.11870 -12.04040 -11.66641 -11.53109 -11.13592 -10.89315 -10.77228 -10.76628 -10.72412 -10.41801 -10.36799 -10.27761 -10.18077 -9.64534 -9.21618 -9.01150 -8.93227 -8.52351 -8.35436 -6.64722 -4.74488 -0.38509 0.89176 1.16174 1.59562 1.63583 2.45345 2.79023 2.90668 2.96758 3.06338 3.51586 3.59380 3.87949 3.90177 4.18587 4.31674 4.46317 4.53886 4.72366 4.88919 4.90808 5.00418 5.04075 5.13577 5.23109 5.30785 5.33480 5.37677 5.49791 5.60314 5.65489 6.00648 6.05272 6.08185 6.13099 6.27623 6.31263 6.39543 6.46091 6.69739 6.85819 6.95805 7.14859 7.59355 7.80913 8.32644 8.32875 8.38306 8.92665 10.45485 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.005224 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.943840 B = 5358.321532 C = 7185.195896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.521 5.521 3 C 0.210 3.790 4 C -0.181 4.181 5 C -0.039 4.039 6 C -0.146 4.146 7 C -0.060 4.060 8 C -0.186 4.186 9 C 0.289 3.711 10 N -0.445 5.445 11 C 0.016 3.984 12 C 0.215 3.785 13 O -0.541 6.541 14 C -0.556 4.556 15 H 0.095 0.905 16 C 0.089 3.911 17 N -0.865 5.865 18 Si 0.852 3.148 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.251 1.251 22 C -0.044 4.044 23 C -0.171 4.171 24 N 0.050 4.950 25 O -0.118 6.118 26 O -0.170 6.170 27 C 0.557 3.443 28 O -0.499 6.499 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.196 0.804 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.353 0.647 39 H 0.274 0.726 40 H 0.094 0.906 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 2.413 -0.141 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.240 5.240 3 C 0.108 3.892 4 C -0.201 4.201 5 C -0.058 4.058 6 C -0.165 4.165 7 C -0.077 4.077 8 C -0.192 4.192 9 C 0.187 3.813 10 N -0.165 5.165 11 C -0.108 4.108 12 C 0.173 3.827 13 O -0.351 6.351 14 C -0.592 4.592 15 H 0.113 0.887 16 C -0.119 4.119 17 N -0.499 5.499 18 Si 0.680 3.320 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.176 1.176 22 C -0.168 4.168 23 C -0.260 4.260 24 N 0.570 4.430 25 O -0.340 6.340 26 O -0.379 6.379 27 C 0.351 3.649 28 O -0.375 6.375 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.213 0.787 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.205 0.795 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.487 1.448 -0.531 14.569 hybrid contribution 0.521 0.334 1.220 1.368 sum -13.966 1.781 0.689 14.096 Atomic orbital electron populations 1.22096 0.76238 1.05056 1.03938 1.45109 1.08832 1.04242 1.65795 1.18037 0.90520 0.86124 0.94496 1.20798 1.00338 0.90016 1.08985 1.21397 0.94556 0.97635 0.92190 1.21089 0.93809 0.99249 1.02351 1.22631 1.04833 0.89897 0.90318 1.19214 0.91366 0.93961 1.14637 1.21335 0.93774 0.89742 0.76442 1.66814 0.98969 1.43336 1.07417 1.24727 0.95899 0.94090 0.96095 1.20348 0.82860 0.90489 0.88955 1.86518 1.29492 1.60079 1.58987 1.21278 1.29098 0.89660 1.19198 0.88749 1.24968 0.95174 0.95066 0.96669 1.69838 1.33604 1.10851 1.35577 0.87398 0.81493 0.81280 0.81822 1.18842 1.20811 1.17572 1.26058 0.99331 0.93918 0.97542 1.21511 0.92484 0.84907 1.27101 1.42607 1.00982 1.01056 0.98317 1.94652 0.94203 1.93225 1.51879 1.94569 1.66580 1.22095 1.54697 1.15467 0.86507 0.83797 0.79159 1.91064 1.67606 1.30200 1.48645 0.90574 0.88578 0.89359 0.84235 0.84491 0.83818 0.78749 0.88648 0.88028 0.79517 0.91561 0.88735 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.83 59.85 0.59 1.19 16 2 N -0.52 -6.99 3.04 -124.59 -0.38 -7.37 16 3 C 0.21 2.68 6.52 -83.89 -0.55 2.13 16 4 C -0.18 -1.68 9.20 -39.41 -0.36 -2.04 16 5 C -0.04 -0.35 10.01 -39.53 -0.40 -0.74 16 6 C -0.15 -1.69 9.97 -39.94 -0.40 -2.09 16 7 C -0.06 -0.86 6.21 -39.62 -0.25 -1.10 16 8 C -0.19 -2.79 5.34 -104.93 -0.56 -3.35 16 9 C 0.29 5.16 5.23 -82.04 -0.43 4.73 16 10 N -0.44 -8.57 4.13 -172.58 -0.71 -9.28 16 11 C 0.02 0.30 6.87 -2.76 -0.02 0.28 16 12 C 0.21 4.47 1.00 -90.84 -0.09 4.37 16 13 O -0.54 -12.08 13.35 -35.23 -0.47 -12.55 16 14 C -0.56 -12.54 7.67 -34.44 -0.26 -12.80 16 15 H 0.09 2.21 7.77 -52.49 -0.41 1.80 16 16 C 0.09 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.86 -21.76 13.96 55.43 0.77 -20.98 16 18 Si 0.85 17.59 24.31 -169.99 -4.13 13.46 16 19 H -0.26 -5.34 7.05 56.52 0.40 -4.94 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.25 -4.96 5.15 56.52 0.29 -4.67 16 22 C -0.04 -0.84 5.98 -2.57 -0.02 -0.86 16 23 C -0.17 -3.27 6.87 -79.71 -0.55 -3.82 16 24 N 0.05 1.07 4.45 34.08 0.15 1.23 16 25 O -0.12 -2.60 17.11 -29.46 -0.50 -3.11 16 26 O -0.17 -3.76 17.32 -36.55 -0.63 -4.40 16 27 C 0.56 9.79 7.37 -15.73 -0.12 9.67 16 28 O -0.50 -9.85 14.52 -17.39 -0.25 -10.10 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.93 7.33 -51.93 -0.38 0.55 16 31 H 0.09 0.51 6.17 -51.93 -0.32 0.19 16 32 H 0.14 0.84 6.18 -52.49 -0.32 0.52 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.20 3.25 1.70 -52.49 -0.09 3.16 16 36 H 0.10 1.60 4.88 -51.93 -0.25 1.34 16 37 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 38 H 0.35 7.51 3.57 45.56 0.16 7.67 16 39 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 40 H 0.09 1.86 6.82 -51.93 -0.35 1.51 16 41 H 0.10 1.73 4.72 -51.93 -0.25 1.49 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -30.29 324.89 -7.91 -38.20 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -3.15 Total: 12.41 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.50 Total: -2.41 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.17 Total: -36.40 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.86 Total: -30.15 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -4.13 Total: 13.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.29 -7.91 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307101856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.015 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds