Wall clock time and date at job start Wed Apr 1 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38023 * 119.40527 * 2 1 4 4 C 1.39099 * 120.98209 * 359.97438 * 3 2 1 5 5 C 1.37844 * 119.73504 * 180.02562 * 4 3 2 6 6 C 1.38763 * 120.65603 * 359.95394 * 5 4 3 7 7 C 1.36701 * 120.54214 * 0.02562 * 6 5 4 8 8 C 1.39629 * 119.72525 * 0.02562 * 7 6 5 9 9 C 1.47063 * 121.19551 * 179.97438 * 8 7 6 10 10 N 1.37885 * 120.84784 * 0.02730 * 9 8 7 11 11 C 1.47963 * 111.00015 * 309.61715 * 10 9 8 12 12 C 1.53937 * 86.18022 * 137.58368 * 11 10 9 13 13 O 1.42892 * 113.73819 * 90.63814 * 12 11 10 14 14 C 1.50701 * 113.73022 * 221.81394 * 12 11 10 15 15 H 1.07998 * 120.00501 * 358.10223 * 14 12 11 16 16 C 1.37883 * 120.00072 * 178.09830 * 14 12 11 17 17 N 1.31508 * 120.00197 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 119.99567 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47002 * 90.00055 * 18 16 14 20 20 H 1.48502 * 109.46875 * 209.99769 * 18 16 14 21 21 H 1.48496 * 109.47542 * 329.99495 * 18 16 14 22 22 C 1.48304 * 111.00477 * 48.96797 * 10 9 8 23 23 C 1.36940 * 118.30699 * 180.29402 * 9 8 7 24 24 N 1.48037 * 119.92629 * 179.70741 * 23 9 8 25 25 O 1.21798 * 119.99661 * 0.02562 * 24 23 9 26 26 O 1.21789 * 120.00048 * 180.02562 * 24 23 9 27 27 C 1.34388 * 119.40656 * 180.02562 * 2 1 3 28 28 O 1.21987 * 119.06274 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47580 * 89.99553 * 1 2 3 30 30 H 1.09004 * 109.47325 * 209.99950 * 1 2 3 31 31 H 1.09004 * 109.47204 * 330.00111 * 1 2 3 32 32 H 1.07998 * 120.12973 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.66895 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.72910 * 180.02562 * 6 5 4 35 35 H 1.07995 * 120.13920 * 180.02562 * 7 6 5 36 36 H 1.08999 * 113.75515 * 23.26264 * 11 10 9 37 37 H 1.09004 * 113.75730 * 251.89810 * 11 10 9 38 38 H 0.96697 * 114.00344 * 181.89443 * 13 12 11 39 39 H 0.97006 * 120.00250 * 180.02562 * 17 16 14 40 40 H 1.09003 * 113.85755 * 108.14711 * 22 10 9 41 41 H 1.08998 * 113.75953 * 336.68152 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.2024 0.0000 4 6 1.4553 2.4117 -0.0005 5 6 2.1581 3.5976 -0.0011 6 6 3.5457 3.5976 -0.0001 7 6 4.2405 2.4204 0.0009 8 6 3.5481 1.2078 0.0003 9 6 4.2627 -0.0775 0.0008 10 7 5.6409 -0.1201 0.0023 11 6 6.1994 0.7442 -1.0610 12 6 7.2344 1.1900 -0.0123 13 8 8.4217 0.3950 -0.0018 14 6 7.5185 2.6698 -0.0316 15 1 7.0341 3.3033 -0.7598 16 6 8.3970 3.2151 0.8806 17 7 8.6446 4.5065 0.8641 18 14 9.2354 2.1193 2.1399 19 1 10.5159 1.6146 1.5824 20 1 9.5062 2.9003 3.3735 21 1 8.3506 0.9718 2.4649 22 6 6.1992 0.7716 1.0475 23 6 3.5246 -1.2309 -0.0060 24 7 4.2072 -2.5445 -0.0123 25 8 5.4240 -2.5985 -0.0111 26 8 3.5521 -3.5711 -0.0188 27 6 2.1249 -1.1707 -0.0005 28 8 1.4869 -2.2105 -0.0015 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.3754 2.4215 -0.0005 33 1 1.6234 4.5358 -0.0019 34 1 4.0812 4.5355 -0.0001 35 1 5.3204 2.4280 0.0020 36 1 5.5257 1.5399 -1.3790 37 1 6.6301 0.1910 -1.8955 38 1 9.0622 0.6536 0.6749 39 1 9.2630 4.8901 1.5057 40 1 6.6300 0.2403 1.8963 41 1 5.5256 1.5753 1.3447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307101856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:36 Heat of formation + Delta-G solvation = 45.771618 kcal Electronic energy + Delta-G solvation = -31897.580982 eV Core-core repulsion = 27556.364298 eV Total energy + Delta-G solvation = -4341.216684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.81029 -42.71714 -41.88917 -39.80819 -37.71059 -37.38475 -36.95478 -35.11256 -34.58447 -32.13642 -31.17261 -30.52366 -28.71434 -27.67595 -27.50290 -26.01944 -24.40504 -24.10703 -22.74877 -21.43292 -20.86363 -20.27594 -19.49612 -19.06034 -18.68163 -18.39940 -18.15860 -17.76458 -17.52649 -17.31254 -16.50514 -16.19676 -15.99603 -15.63186 -15.45871 -15.10958 -14.92669 -14.73275 -14.57632 -14.36807 -13.93192 -13.59928 -13.27896 -13.14713 -13.00295 -12.81572 -12.60170 -12.50816 -12.43660 -12.22265 -12.12383 -11.97835 -11.73240 -11.69769 -11.56164 -11.25783 -10.99259 -10.65852 -10.04255 -10.00464 -9.36711 -8.46791 -6.58001 -1.70685 -0.23375 -0.07690 0.25849 0.37509 1.24297 1.30881 1.33365 1.37240 1.55999 2.14327 2.16416 2.53880 2.72069 2.77050 2.96761 3.22317 3.28400 3.52931 3.69613 3.84634 3.91994 4.00865 4.09806 4.14563 4.22075 4.30223 4.38965 4.50878 4.55204 4.66661 4.68125 4.75419 4.77834 4.79478 5.06797 5.19398 5.23037 5.23713 5.40271 5.47378 5.68652 5.74501 6.00968 6.37106 6.49524 6.65471 6.67750 7.11152 8.65727 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.005224 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.943840 B = 5358.321532 C = 7185.195896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.509 5.509 3 C 0.207 3.793 4 C -0.159 4.159 5 C -0.011 4.011 6 C -0.142 4.142 7 C -0.083 4.083 8 C -0.201 4.201 9 C 0.293 3.707 10 N -0.462 5.462 11 C 0.024 3.976 12 C 0.205 3.795 13 O -0.555 6.555 14 C -0.544 4.544 15 H 0.080 0.920 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.893 3.107 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.242 1.242 22 C -0.034 4.034 23 C -0.198 4.198 24 N 0.053 4.947 25 O -0.146 6.146 26 O -0.196 6.196 27 C 0.552 3.448 28 O -0.534 6.534 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.188 0.812 33 H 0.187 0.813 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.355 0.645 39 H 0.275 0.725 40 H 0.086 0.914 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.950 5.095 0.089 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.226 5.226 3 C 0.104 3.896 4 C -0.179 4.179 5 C -0.030 4.030 6 C -0.161 4.161 7 C -0.100 4.100 8 C -0.207 4.207 9 C 0.191 3.809 10 N -0.184 5.184 11 C -0.100 4.100 12 C 0.164 3.836 13 O -0.366 6.366 14 C -0.581 4.581 15 H 0.098 0.902 16 C -0.153 4.153 17 N -0.539 5.539 18 Si 0.719 3.281 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.166 1.166 22 C -0.159 4.159 23 C -0.288 4.288 24 N 0.567 4.433 25 O -0.363 6.363 26 O -0.402 6.402 27 C 0.346 3.654 28 O -0.414 6.414 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.205 0.795 33 H 0.204 0.796 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.207 0.793 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.795 4.113 -0.306 18.267 hybrid contribution 1.410 -0.240 1.083 1.794 sum -16.385 3.874 0.777 16.855 Atomic orbital electron populations 1.22540 0.73161 1.06735 1.05740 1.45175 1.10480 1.03101 1.63817 1.18372 0.89707 0.87101 0.94383 1.21359 1.02545 0.88046 1.05988 1.21934 0.93159 0.99557 0.88343 1.21328 0.95503 0.98248 1.00981 1.22324 1.03778 0.90891 0.93038 1.19138 0.92595 0.92390 1.16528 1.21478 0.93086 0.90777 0.75596 1.66701 1.00535 1.43688 1.07428 1.24716 0.95531 0.94380 0.95400 1.20447 0.82855 0.89404 0.90894 1.86513 1.30222 1.60458 1.59362 1.21318 1.28239 0.90358 1.18200 0.90220 1.25489 0.95860 0.95798 0.98189 1.69919 1.34977 1.12159 1.36839 0.86723 0.81013 0.80297 0.80070 1.18430 1.20842 1.16610 1.25916 0.99038 0.94156 0.96741 1.21737 0.93647 0.83413 1.30001 1.42929 1.00854 1.02016 0.97550 1.94620 0.95018 1.93761 1.52939 1.94535 1.66483 1.23529 1.55672 1.15399 0.85812 0.84831 0.79327 1.91036 1.67944 1.31567 1.50820 0.88671 0.89679 0.84969 0.79524 0.79570 0.83148 0.81434 0.86747 0.88533 0.79260 0.91549 0.89613 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 9.83 127.77 1.26 2.02 16 2 N -0.51 -12.17 3.04 -666.42 -2.02 -14.19 16 3 C 0.21 4.45 6.52 38.94 0.25 4.70 16 4 C -0.16 -1.85 9.20 22.38 0.21 -1.64 16 5 C -0.01 -0.12 10.01 22.30 0.22 0.10 16 6 C -0.14 -2.70 9.97 22.04 0.22 -2.48 16 7 C -0.08 -2.21 6.21 22.25 0.14 -2.07 16 8 C -0.20 -5.64 5.34 -20.07 -0.11 -5.75 16 9 C 0.29 10.48 5.23 40.20 0.21 10.69 16 10 N -0.46 -18.18 4.13 -703.12 -2.90 -21.08 16 11 C 0.02 0.90 6.87 86.41 0.59 1.49 16 12 C 0.21 8.62 1.00 -10.89 -0.01 8.60 16 13 O -0.55 -25.14 13.35 -148.98 -1.99 -27.12 16 14 C -0.54 -24.79 7.67 25.60 0.20 -24.59 16 15 H 0.08 3.80 7.77 -2.91 -0.02 3.77 16 16 C 0.05 2.41 5.47 84.66 0.46 2.87 16 17 N -0.90 -45.89 13.96 21.45 0.30 -45.59 16 18 Si 0.89 36.28 24.31 68.60 1.67 37.95 16 19 H -0.26 -10.28 7.05 99.48 0.70 -9.58 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.24 -9.38 5.15 99.48 0.51 -8.87 16 22 C -0.03 -1.31 5.98 86.34 0.52 -0.79 16 23 C -0.20 -7.73 6.87 36.52 0.25 -7.48 16 24 N 0.05 2.39 4.45 -46.09 -0.21 2.18 16 25 O -0.15 -6.79 17.11 18.89 0.32 -6.46 16 26 O -0.20 -9.18 17.32 25.68 0.44 -8.74 16 27 C 0.55 19.25 7.37 84.76 0.62 19.87 16 28 O -0.53 -21.41 14.52 16.07 0.23 -21.18 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.42 7.33 -2.38 -0.02 1.41 16 31 H 0.13 0.59 6.17 -2.39 -0.01 0.58 16 32 H 0.19 0.51 6.18 -2.91 -0.02 0.49 16 33 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.17 5.49 1.70 -2.91 0.00 5.49 16 36 H 0.11 3.84 4.88 -2.39 -0.01 3.83 16 37 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.36 15.17 3.57 -74.06 -0.26 14.91 16 39 H 0.27 13.22 8.31 -92.70 -0.77 12.45 16 40 H 0.09 3.43 6.82 -2.39 -0.02 3.41 16 41 H 0.11 3.97 4.72 -2.39 -0.01 3.96 16 Total: -1.00 -71.44 324.89 1.56 -69.88 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.68 Total: 28.80 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.03 Total: 5.56 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -4.83 Total: -78.69 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -0.99 Total: -63.50 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 1.67 Total: 37.95 kcal Total: -71.44 1.56 -69.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307101856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.648 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds