Wall clock time and date at job start Wed Apr 1 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35993 * 117.00372 * 2 1 4 4 C 1.38566 * 120.07080 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99806 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.92725 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46928 * 260.00390 * 6 5 4 8 8 C 1.38826 * 119.99772 * 180.02562 * 7 6 5 9 9 C 1.39798 * 119.58387 * 359.97438 * 8 7 6 10 10 C 1.38592 * 119.48792 * 179.97438 * 9 8 7 11 11 C 1.38393 * 118.68558 * 0.02562 * 10 9 8 12 12 C 1.40558 * 119.14323 * 359.97438 * 11 10 9 13 13 C 1.41314 * 119.77985 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00314 * 0.02562 * 13 12 11 15 15 C 1.40034 * 119.99906 * 179.97438 * 13 12 11 16 16 N 1.30743 * 119.99755 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99897 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47154 * 60.00438 * 17 15 13 19 19 H 1.48500 * 109.46860 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47235 * 300.00014 * 17 15 13 21 21 N 1.31959 * 119.58385 * 179.72607 * 8 7 6 22 22 C 1.38251 * 120.14488 * 0.25705 * 5 4 3 23 23 N 1.48005 * 119.92449 * 179.74273 * 22 5 4 24 24 O 1.21803 * 119.99805 * 180.02562 * 23 22 5 25 25 O 1.21798 * 120.00380 * 359.97438 * 23 22 5 26 26 C 1.38245 * 120.14731 * 359.49246 * 22 5 4 27 27 C 1.38566 * 119.99903 * 0.50420 * 26 22 5 28 28 O 1.35989 * 120.07319 * 179.77686 * 27 26 22 29 29 H 1.09007 * 109.46836 * 59.99828 * 1 2 3 30 30 H 1.08991 * 109.47638 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47111 * 300.00421 * 1 2 3 32 32 H 1.07995 * 120.00122 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.47247 * 140.00322 * 6 5 4 34 34 H 1.09001 * 109.47358 * 19.99748 * 6 5 4 35 35 H 0.96995 * 120.00050 * 359.72380 * 7 6 5 36 36 H 1.07997 * 120.25517 * 359.95830 * 9 8 7 37 37 H 1.08006 * 120.65828 * 180.02562 * 10 9 8 38 38 H 1.07993 * 120.42794 * 179.97438 * 11 10 9 39 39 H 0.97003 * 119.99668 * 179.97438 * 16 15 13 40 40 H 1.08005 * 120.00018 * 180.25674 * 26 22 5 41 41 H 0.96708 * 113.99555 * 269.97534 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9226 3.6057 0.0011 6 6 1.1019 4.8696 0.0011 7 7 1.0376 5.4100 -1.3591 8 6 0.3317 6.5791 -1.6088 9 6 -0.3148 7.2332 -0.5560 10 6 -1.0185 8.4005 -0.8074 11 6 -1.0597 8.8853 -2.1030 12 6 -0.3891 8.1821 -3.1187 13 6 -0.4219 8.6654 -4.4462 14 1 -0.9606 9.5724 -4.6776 15 6 0.2450 7.9687 -5.4616 16 7 0.8975 6.8710 -5.1813 17 14 0.2022 8.6079 -7.2163 18 1 0.7984 9.9672 -7.2626 19 1 0.9788 7.6961 -8.0942 20 1 -1.2048 8.6682 -7.6870 21 7 0.2837 7.0616 -2.8361 22 6 3.3031 3.6797 -0.0043 23 7 3.9717 5.0001 -0.0095 24 8 5.1879 5.0669 -0.0147 25 8 3.3058 6.0200 -0.0094 26 6 4.0604 2.5231 0.0004 27 6 3.4360 1.2861 -0.0001 28 8 4.1795 0.1475 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2148 2.3197 0.0014 33 1 1.5640 5.6029 0.6619 34 1 0.0939 4.6484 0.3521 35 1 1.4918 4.9534 -2.0844 36 1 -0.2666 6.8319 0.4455 37 1 -1.5246 8.9214 -0.0081 38 1 -1.6000 9.7922 -2.3307 39 1 1.3591 6.3882 -5.8848 40 1 5.1387 2.5837 0.0004 41 1 4.3945 -0.1818 -0.8836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308499635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:50 Heat of formation + Delta-G solvation = -20.253645 kcal Electronic energy + Delta-G solvation = -29775.795401 eV Core-core repulsion = 25431.715647 eV Total energy + Delta-G solvation = -4344.079755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.33350 -41.80599 -40.11777 -39.21904 -38.53096 -37.61483 -36.39713 -35.06741 -32.72475 -32.35651 -32.00436 -30.35835 -28.83921 -27.72782 -27.20159 -25.93583 -23.85861 -23.45312 -23.06494 -22.18639 -20.63838 -19.77150 -19.39962 -19.23810 -18.70563 -18.37614 -18.07170 -17.63424 -17.06145 -16.61379 -16.46328 -16.06227 -15.94666 -15.64415 -15.44158 -15.16550 -14.92648 -14.65371 -14.32218 -13.89553 -13.77717 -13.65201 -13.19315 -12.86140 -12.71483 -12.64000 -12.59387 -12.54217 -12.44940 -12.26131 -12.20301 -12.08993 -11.92060 -11.74404 -11.23007 -10.62303 -10.46047 -9.81852 -9.78499 -9.40954 -8.27477 -8.20321 -6.44484 -1.33105 -0.45337 0.17224 0.35569 1.10852 1.39859 1.41190 1.52917 1.60875 1.82539 1.87348 2.25973 2.68074 2.75594 2.95912 3.13153 3.17198 3.40183 3.86091 4.06236 4.13527 4.15207 4.25993 4.31390 4.33689 4.39667 4.43177 4.54777 4.70488 4.79844 4.82340 4.91352 5.02044 5.04981 5.13527 5.31620 5.37575 5.75146 5.83408 6.00523 6.08815 6.23473 6.47011 6.55019 6.57225 6.81491 6.92877 7.22388 8.37598 8.53852 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003062 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.188513 B = 9142.248249 C = 9292.569409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.299 6.299 3 C 0.166 3.834 4 C -0.170 4.170 5 C -0.001 4.001 6 C 0.165 3.835 7 N -0.718 5.718 8 C 0.405 3.595 9 C -0.359 4.359 10 C -0.030 4.030 11 C -0.344 4.344 12 C 0.261 3.739 13 C -0.475 4.475 14 H 0.086 0.914 15 C 0.028 3.972 16 N -0.755 5.755 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.257 1.257 21 N -0.565 5.565 22 C -0.070 4.070 23 N 0.036 4.964 24 O -0.180 6.180 25 O -0.182 6.182 26 C -0.044 4.044 27 C 0.090 3.910 28 O -0.479 6.479 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.182 0.818 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.386 0.614 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.274 0.726 40 H 0.176 0.824 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -18.743 9.203 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.210 6.210 3 C 0.117 3.883 4 C -0.190 4.190 5 C -0.003 4.003 6 C 0.041 3.959 7 N -0.352 5.352 8 C 0.165 3.835 9 C -0.384 4.384 10 C -0.054 4.054 11 C -0.367 4.367 12 C 0.134 3.866 13 C -0.507 4.507 14 H 0.104 0.896 15 C -0.194 4.194 16 N -0.377 5.377 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.182 1.182 21 N -0.288 5.288 22 C -0.155 4.155 23 N 0.547 4.453 24 O -0.393 6.393 25 O -0.391 6.391 26 C -0.063 4.063 27 C 0.043 3.957 28 O -0.292 6.292 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.199 0.801 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.219 0.781 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.194 0.806 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 1.757 -20.118 9.280 22.224 hybrid contribution -0.005 1.265 -0.795 1.494 sum 1.751 -18.853 8.485 20.748 Atomic orbital electron populations 1.23667 0.75085 1.06893 1.03249 1.86221 1.24398 1.24321 1.86105 1.19776 0.91816 0.85780 0.90917 1.21308 1.02644 0.88521 1.06482 1.19640 0.90255 0.96888 0.93544 1.20433 0.99122 0.90623 0.85690 1.43849 1.58017 1.25573 1.07782 1.18769 0.88073 0.86310 0.90383 1.20918 1.15677 1.03536 0.98292 1.21001 0.94688 0.94128 0.95572 1.21684 1.14547 1.05559 0.94910 1.18627 0.86959 0.87206 0.93792 1.19903 1.29417 1.09300 0.92049 0.89628 1.26928 0.93026 0.94277 1.05123 1.70260 1.20119 1.12550 1.34773 0.85252 0.79561 0.79027 0.75730 1.18609 1.19430 1.18165 1.68126 1.26516 1.16384 1.17737 1.20748 0.92775 0.82218 1.19710 1.43826 1.00775 1.03588 0.97075 1.94461 0.96735 1.94149 1.53995 1.94666 1.64242 1.25694 1.54494 1.21138 1.02791 0.88357 0.94062 1.17181 0.86350 0.86218 1.05989 1.84886 1.71062 1.37334 1.35875 0.91138 0.85112 0.90462 0.80100 0.89919 0.89404 0.78130 0.86271 0.85273 0.88065 0.91603 0.80629 0.72381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.15 16 2 O -0.30 -4.16 10.28 -79.60 -0.82 -4.98 16 3 C 0.17 2.75 6.70 22.57 0.15 2.90 16 4 C -0.17 -3.01 8.66 22.35 0.19 -2.81 16 5 C 0.00 -0.03 5.25 -19.86 -0.10 -0.13 16 6 C 0.17 5.01 4.02 85.63 0.34 5.35 16 7 N -0.72 -29.00 4.93 -348.69 -1.72 -30.72 16 8 C 0.40 20.08 7.65 133.42 1.02 21.10 16 9 C -0.36 -16.29 9.34 22.73 0.21 -16.08 16 10 C -0.03 -1.36 10.15 22.39 0.23 -1.14 16 11 C -0.34 -17.95 9.83 22.87 0.22 -17.73 16 12 C 0.26 15.25 6.55 40.18 0.26 15.51 16 13 C -0.47 -27.01 9.14 23.46 0.21 -26.79 16 14 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 15 C 0.03 1.47 5.50 85.29 0.47 1.94 16 16 N -0.75 -41.97 11.46 21.84 0.25 -41.72 16 17 Si 0.98 39.64 29.56 68.60 2.03 41.67 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 N -0.57 -32.55 7.89 -186.58 -1.47 -34.02 16 22 C -0.07 -1.86 6.85 36.38 0.25 -1.62 16 23 N 0.04 1.25 4.45 -46.46 -0.21 1.04 16 24 O -0.18 -6.28 18.44 18.88 0.35 -5.93 16 25 O -0.18 -7.39 14.72 18.89 0.28 -7.11 16 26 C -0.04 -0.90 9.49 22.35 0.21 -0.69 16 27 C 0.09 1.54 6.72 22.57 0.15 1.70 16 28 O -0.48 -6.62 13.29 -79.56 -1.06 -7.67 16 29 H 0.07 0.49 7.67 -2.38 -0.02 0.47 16 30 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.40 7.66 -2.39 -0.02 0.38 16 32 H 0.18 2.30 6.27 -2.91 -0.02 2.29 16 33 H 0.08 2.78 5.66 -2.39 -0.01 2.77 16 34 H 0.09 2.25 7.78 -2.39 -0.02 2.24 16 35 H 0.39 16.35 8.58 -92.71 -0.80 15.55 16 36 H 0.12 4.60 6.68 -2.91 -0.02 4.58 16 37 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 39 H 0.27 13.83 8.29 -92.71 -0.77 13.06 16 40 H 0.18 3.18 7.61 -2.91 -0.02 3.16 16 41 H 0.42 1.93 9.07 -74.05 -0.67 1.26 16 Total: -1.00 -77.00 359.36 2.24 -74.76 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.33 Total: 32.03 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.94 Total: -17.33 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.15 Total: -105.42 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.25 Total: -25.70 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -77.00 2.24 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308499635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.507 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds