Wall clock time and date at job start Wed Apr 1 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35533 * 125.67354 * 2 1 4 4 C 1.35451 * 108.86862 * 179.73380 * 3 2 1 5 5 N 1.48019 * 126.06907 * 180.25354 * 4 3 2 6 6 O 1.21797 * 120.00203 * 180.20328 * 5 4 3 7 7 O 1.21806 * 119.99459 * 0.19272 * 5 4 3 8 8 C 1.39829 * 107.86534 * 0.39822 * 4 3 2 9 9 C 1.37642 * 125.68032 * 179.97438 * 2 1 3 10 10 C 1.46677 * 126.23484 * 0.04934 * 9 2 1 11 11 O 1.21697 * 119.99843 * 354.70026 * 10 9 2 12 12 N 1.34777 * 120.00078 * 174.69877 * 10 9 2 13 13 C 1.46501 * 120.00201 * 185.04534 * 12 10 9 14 14 C 1.50697 * 109.47556 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96125 * 269.72736 * 14 13 12 16 16 C 1.38277 * 120.13341 * 179.76428 * 15 14 13 17 17 C 1.38119 * 120.07360 * 0.51031 * 16 15 14 18 18 C 1.38855 * 119.92940 * 359.73939 * 17 16 15 19 19 O 1.35757 * 120.07327 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99389 * 354.38471 * 19 18 17 21 21 H 1.07996 * 120.00397 * 5.06890 * 20 19 18 22 22 C 1.38655 * 119.99423 * 185.06833 * 20 19 18 23 23 N 1.31553 * 120.00208 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99873 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47054 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47199 * 119.99855 * 24 22 20 27 27 H 1.48499 * 109.47071 * 240.00057 * 24 22 20 28 28 C 1.38077 * 119.97036 * 89.99836 * 14 13 12 29 29 H 1.08999 * 109.46666 * 274.62248 * 1 2 3 30 30 H 1.09000 * 109.47504 * 34.62542 * 1 2 3 31 31 H 1.09002 * 109.46476 * 154.63022 * 1 2 3 32 32 H 1.07998 * 125.56478 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.45680 * 179.87265 * 8 4 3 34 34 H 0.97000 * 119.99945 * 5.04894 * 12 10 9 35 35 H 1.09009 * 109.46782 * 300.00438 * 13 12 10 36 36 H 1.09004 * 109.47284 * 59.99897 * 13 12 10 37 37 H 1.07999 * 119.93111 * 359.97438 * 15 14 13 38 38 H 1.08000 * 119.96455 * 180.25319 * 16 15 14 39 39 H 1.07999 * 120.03878 * 179.72498 * 17 16 15 40 40 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 41 41 H 1.08005 * 120.03034 * 359.95685 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0060 5 7 4.7322 1.6028 0.0133 6 8 5.8545 1.1294 0.0145 7 8 4.5810 2.8114 0.0179 8 6 3.5780 -0.6886 0.0006 9 6 2.2679 -1.1180 0.0005 10 6 1.8126 -2.5124 0.0001 11 8 0.6260 -2.7650 0.0966 12 7 2.7082 -3.5137 -0.1072 13 6 2.2474 -4.8999 -0.2189 14 6 3.4377 -5.8181 -0.3246 15 6 3.9545 -6.1389 -1.5669 16 6 5.0496 -6.9772 -1.6678 17 6 5.6243 -7.5053 -0.5283 18 6 5.1046 -7.1892 0.7200 19 8 5.6668 -7.7071 1.8419 20 6 6.6520 -8.6116 1.6712 21 1 7.0162 -8.8327 0.6789 22 6 7.1975 -9.2581 2.7699 23 7 6.7541 -8.9885 3.9788 24 14 8.5629 -10.5108 2.5337 25 1 8.8791 -10.6315 1.0877 26 1 9.7738 -10.0680 3.2704 27 1 8.1207 -11.8291 3.0549 28 6 4.0077 -6.3427 0.8183 29 1 -0.3632 0.0828 1.0243 30 1 -0.3634 0.8456 -0.5839 31 1 -0.3632 -0.9286 -0.4403 32 1 1.9081 2.1236 0.0004 33 1 4.4584 -1.3142 0.0013 34 1 3.6580 -3.3166 -0.1103 35 1 1.6645 -5.1613 0.6644 36 1 1.6263 -5.0057 -1.1084 37 1 3.5039 -5.7311 -2.4597 38 1 5.4534 -7.2225 -2.6389 39 1 6.4768 -8.1635 -0.6080 40 1 7.1354 -9.4410 4.7474 41 1 3.6014 -6.0948 1.7878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318448368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:20 Heat of formation + Delta-G solvation = 11.744559 kcal Electronic energy + Delta-G solvation = -28272.103218 eV Core-core repulsion = 23929.411010 eV Total energy + Delta-G solvation = -4342.692208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.73457 -41.65441 -39.69645 -39.01188 -36.91552 -36.58559 -35.00697 -33.79156 -32.39547 -31.52225 -30.20244 -29.18284 -28.24761 -26.28655 -25.66518 -25.21803 -23.06872 -21.81010 -21.52357 -20.93533 -20.45530 -19.28081 -18.61307 -17.79329 -17.65471 -17.27299 -17.04814 -16.38466 -16.31776 -15.93542 -15.42338 -15.08790 -14.63373 -14.50877 -14.45333 -14.03512 -13.69406 -13.58259 -13.48755 -13.13445 -13.05057 -12.81897 -12.53181 -12.31107 -11.73954 -11.68400 -11.46538 -11.37814 -11.22171 -11.02470 -10.91040 -10.78621 -10.50928 -10.44111 -9.95068 -9.48772 -9.45446 -9.15084 -8.94512 -8.35222 -7.40680 -6.53977 -4.13565 0.08741 0.70541 1.10770 1.69496 1.90006 2.04630 2.19241 2.80874 3.03438 3.08865 3.10267 3.14516 3.88674 3.90237 4.10287 4.14281 4.35554 4.45138 4.61342 4.72129 4.79283 4.99278 5.01267 5.05279 5.14114 5.40595 5.44090 5.59751 5.69447 5.77206 5.81950 5.99184 6.05720 6.12711 6.17193 6.29764 6.46199 6.72701 6.92191 7.07420 7.16309 7.21712 7.29496 7.57814 7.62434 7.78138 7.89874 8.91434 9.58653 10.63643 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.002225 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.880144 B =12581.151552 C =13725.839578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.389 5.389 3 C 0.108 3.892 4 C -0.128 4.128 5 N 0.063 4.937 6 O -0.157 6.157 7 O -0.177 6.177 8 C -0.083 4.083 9 C -0.025 4.025 10 C 0.589 3.411 11 O -0.543 6.543 12 N -0.701 5.701 13 C 0.171 3.829 14 C -0.078 4.078 15 C -0.194 4.194 16 C -0.075 4.075 17 C -0.223 4.223 18 C 0.150 3.850 19 O -0.175 6.175 20 C -0.394 4.394 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.169 4.169 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.200 0.800 33 H 0.174 0.826 34 H 0.408 0.592 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.271 0.729 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.428 16.339 -9.768 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.061 5.061 3 C -0.036 4.036 4 C -0.220 4.220 5 N 0.581 4.419 6 O -0.374 6.374 7 O -0.389 6.389 8 C -0.108 4.108 9 C -0.138 4.138 10 C 0.375 3.625 11 O -0.422 6.422 12 N -0.351 5.351 13 C 0.049 3.951 14 C -0.079 4.079 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.243 4.243 18 C 0.096 3.904 19 O -0.078 6.078 20 C -0.470 4.470 21 H 0.111 0.889 22 C -0.164 4.164 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.189 4.189 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.216 0.784 33 H 0.191 0.809 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.238 15.605 -9.222 22.446 hybrid contribution 1.572 -0.279 -0.107 1.600 sum -11.666 15.326 -9.329 21.402 Atomic orbital electron populations 1.22631 0.73426 1.06864 1.05176 1.44057 1.08179 1.04174 1.49675 1.21739 0.88106 0.93472 1.00269 1.20117 0.85878 0.91025 1.24934 1.42600 1.01553 1.00816 0.96970 1.94585 1.09219 1.79874 1.53675 1.94529 1.92918 0.96720 1.54703 1.21283 0.96662 0.91973 1.00915 1.20277 0.88759 0.88903 1.15856 1.16667 0.85918 0.82697 0.77254 1.90811 1.15997 1.84403 1.51012 1.45866 1.10134 1.06361 1.72780 1.20253 0.94523 0.77548 1.02791 1.19182 0.96607 0.98788 0.93328 1.20467 1.00336 1.04792 0.95805 1.20751 0.95214 0.95998 0.97375 1.21268 1.04247 1.06554 0.92184 1.19315 0.91438 0.92514 0.87134 1.83984 1.46489 1.50984 1.26330 1.21380 1.12562 1.17787 0.95228 0.88917 1.25309 0.98795 0.98041 0.94302 1.70039 1.40673 1.40526 0.98148 0.85635 0.79484 0.79362 0.78889 1.19051 1.20041 1.20086 1.20081 0.97838 1.03021 0.97973 0.89115 0.88835 0.86459 0.78359 0.80860 0.75607 0.90234 0.90455 0.87476 0.87191 0.85366 0.91926 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.66 59.85 0.64 0.92 16 2 N -0.39 -2.98 3.16 -120.23 -0.38 -3.36 16 3 C 0.11 0.79 11.06 -16.91 -0.19 0.60 16 4 C -0.13 -1.31 7.11 -80.35 -0.57 -1.88 16 5 N 0.06 0.80 4.45 33.77 0.15 0.95 16 6 O -0.16 -2.23 19.05 -29.46 -0.56 -2.79 16 7 O -0.18 -2.26 19.03 -29.46 -0.56 -2.82 16 8 C -0.08 -0.82 10.08 -39.12 -0.39 -1.22 16 9 C -0.03 -0.25 6.88 -81.98 -0.56 -0.81 16 10 C 0.59 6.75 7.77 -12.85 -0.10 6.66 16 11 O -0.54 -7.30 14.65 5.19 0.08 -7.23 16 12 N -0.70 -7.91 5.53 -62.80 -0.35 -8.26 16 13 C 0.17 2.16 5.80 -5.19 -0.03 2.13 16 14 C -0.08 -1.21 5.25 -104.65 -0.55 -1.75 16 15 C -0.19 -2.93 9.70 -39.53 -0.38 -3.31 16 16 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 17 C -0.22 -4.47 9.17 -39.40 -0.36 -4.83 16 18 C 0.15 3.36 6.65 -39.11 -0.26 3.11 16 19 O -0.17 -4.75 9.76 0.02 0.00 -4.75 16 20 C -0.39 -10.56 9.49 30.89 0.29 -10.26 16 21 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 24 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 28 C -0.17 -3.22 9.64 -39.40 -0.38 -3.60 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.12 0.78 6.18 -51.93 -0.32 0.46 16 32 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.17 1.52 7.45 -52.49 -0.39 1.13 16 34 H 0.41 4.18 7.37 -40.82 -0.30 3.88 16 35 H 0.08 1.05 8.08 -51.92 -0.42 0.63 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -32.82 369.80 -7.75 -40.57 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.09 Total: 5.93 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.34 Total: -14.92 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.18 Total: -34.45 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.05 Total: -17.59 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.82 -7.75 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318448368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.311 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds