Wall clock time and date at job start Wed Apr 1 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35533 * 125.67354 * 2 1 4 4 C 1.35451 * 108.86862 * 179.73380 * 3 2 1 5 5 N 1.48019 * 126.06907 * 180.25354 * 4 3 2 6 6 O 1.21797 * 120.00203 * 180.20328 * 5 4 3 7 7 O 1.21806 * 119.99459 * 0.19272 * 5 4 3 8 8 C 1.39829 * 107.86534 * 0.39822 * 4 3 2 9 9 C 1.37642 * 125.68032 * 179.97438 * 2 1 3 10 10 C 1.46677 * 126.23484 * 0.04934 * 9 2 1 11 11 O 1.21697 * 119.99843 * 354.70026 * 10 9 2 12 12 N 1.34777 * 120.00078 * 174.69877 * 10 9 2 13 13 C 1.46501 * 120.00201 * 185.04534 * 12 10 9 14 14 C 1.50697 * 109.47556 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96125 * 269.72736 * 14 13 12 16 16 C 1.38277 * 120.13341 * 179.76428 * 15 14 13 17 17 C 1.38119 * 120.07360 * 0.51031 * 16 15 14 18 18 C 1.38855 * 119.92940 * 359.73939 * 17 16 15 19 19 O 1.35757 * 120.07327 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99389 * 354.38471 * 19 18 17 21 21 H 1.07996 * 120.00397 * 5.06890 * 20 19 18 22 22 C 1.38655 * 119.99423 * 185.06833 * 20 19 18 23 23 N 1.31553 * 120.00208 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99873 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47054 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47199 * 119.99855 * 24 22 20 27 27 H 1.48499 * 109.47071 * 240.00057 * 24 22 20 28 28 C 1.38077 * 119.97036 * 89.99836 * 14 13 12 29 29 H 1.08999 * 109.46666 * 274.62248 * 1 2 3 30 30 H 1.09000 * 109.47504 * 34.62542 * 1 2 3 31 31 H 1.09002 * 109.46476 * 154.63022 * 1 2 3 32 32 H 1.07998 * 125.56478 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.45680 * 179.87265 * 8 4 3 34 34 H 0.97000 * 119.99945 * 5.04894 * 12 10 9 35 35 H 1.09009 * 109.46782 * 300.00438 * 13 12 10 36 36 H 1.09004 * 109.47284 * 59.99897 * 13 12 10 37 37 H 1.07999 * 119.93111 * 359.97438 * 15 14 13 38 38 H 1.08000 * 119.96455 * 180.25319 * 16 15 14 39 39 H 1.07999 * 120.03878 * 179.72498 * 17 16 15 40 40 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 41 41 H 1.08005 * 120.03034 * 359.95685 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0060 5 7 4.7322 1.6028 0.0133 6 8 5.8545 1.1294 0.0145 7 8 4.5810 2.8114 0.0179 8 6 3.5780 -0.6886 0.0006 9 6 2.2679 -1.1180 0.0005 10 6 1.8126 -2.5124 0.0001 11 8 0.6260 -2.7650 0.0966 12 7 2.7082 -3.5137 -0.1072 13 6 2.2474 -4.8999 -0.2189 14 6 3.4377 -5.8181 -0.3246 15 6 3.9545 -6.1389 -1.5669 16 6 5.0496 -6.9772 -1.6678 17 6 5.6243 -7.5053 -0.5283 18 6 5.1046 -7.1892 0.7200 19 8 5.6668 -7.7071 1.8419 20 6 6.6520 -8.6116 1.6712 21 1 7.0162 -8.8327 0.6789 22 6 7.1975 -9.2581 2.7699 23 7 6.7541 -8.9885 3.9788 24 14 8.5629 -10.5108 2.5337 25 1 8.8791 -10.6315 1.0877 26 1 9.7738 -10.0680 3.2704 27 1 8.1207 -11.8291 3.0549 28 6 4.0077 -6.3427 0.8183 29 1 -0.3632 0.0828 1.0243 30 1 -0.3634 0.8456 -0.5839 31 1 -0.3632 -0.9286 -0.4403 32 1 1.9081 2.1236 0.0004 33 1 4.4584 -1.3142 0.0013 34 1 3.6580 -3.3166 -0.1103 35 1 1.6645 -5.1613 0.6644 36 1 1.6263 -5.0057 -1.1084 37 1 3.5039 -5.7311 -2.4597 38 1 5.4534 -7.2225 -2.6389 39 1 6.4768 -8.1635 -0.6080 40 1 7.1354 -9.4410 4.7474 41 1 3.6014 -6.0948 1.7878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318448368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:19 Heat of formation + Delta-G solvation = -8.918439 kcal Electronic energy + Delta-G solvation = -28272.999233 eV Core-core repulsion = 23929.411010 eV Total energy + Delta-G solvation = -4343.588223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.50827 -42.50555 -40.97248 -40.28825 -38.46491 -37.53993 -36.06579 -34.50057 -34.27916 -32.65125 -31.27492 -30.64180 -28.90490 -27.64484 -26.96348 -26.36683 -23.96918 -23.26329 -22.53091 -22.19923 -21.29852 -20.21333 -19.54916 -19.40467 -18.78219 -18.55181 -18.01582 -17.14222 -17.04090 -16.92995 -16.72112 -16.47952 -16.08476 -15.76829 -15.55516 -15.29921 -15.07435 -14.72938 -14.36090 -14.14592 -13.95326 -13.75640 -13.59326 -13.50200 -13.34392 -13.04253 -12.67273 -12.57685 -12.38675 -12.33092 -12.28516 -12.23084 -12.09439 -11.42268 -11.21390 -10.82667 -10.63068 -10.37321 -9.93706 -9.78505 -9.04337 -8.47985 -6.16285 -0.81842 -0.03771 0.30394 0.36400 0.69747 1.10829 1.29147 1.35592 1.43439 1.53357 1.94595 2.16404 2.17957 2.83166 3.13176 3.23571 3.37593 3.39635 3.62035 3.75839 3.80314 4.08446 4.18184 4.29222 4.30879 4.33713 4.39731 4.50994 4.61022 4.65004 4.70560 4.72737 5.00243 5.10918 5.14290 5.16425 5.24785 5.35108 5.54208 5.60987 5.68777 5.71081 6.00959 6.15218 6.26931 6.58581 6.87340 6.97250 7.77264 8.75278 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.002225 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.880144 B =12581.151552 C =13725.839578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.383 5.383 3 C 0.143 3.857 4 C -0.156 4.156 5 N 0.067 4.933 6 O -0.214 6.214 7 O -0.167 6.167 8 C -0.084 4.084 9 C -0.039 4.039 10 C 0.593 3.407 11 O -0.562 6.562 12 N -0.700 5.700 13 C 0.178 3.822 14 C -0.062 4.062 15 C -0.166 4.166 16 C -0.071 4.071 17 C -0.234 4.234 18 C 0.111 3.889 19 O -0.232 6.232 20 C -0.411 4.411 21 H 0.103 0.897 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.017 2.983 25 H -0.250 1.250 26 H -0.270 1.270 27 H -0.270 1.270 28 C -0.180 4.180 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.240 0.760 33 H 0.175 0.825 34 H 0.413 0.587 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 18.058 -12.867 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.054 5.054 3 C -0.003 4.003 4 C -0.248 4.248 5 N 0.579 4.421 6 O -0.417 6.417 7 O -0.384 6.384 8 C -0.110 4.110 9 C -0.151 4.151 10 C 0.380 3.620 11 O -0.443 6.443 12 N -0.351 5.351 13 C 0.055 3.945 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.089 4.089 17 C -0.253 4.253 18 C 0.060 3.940 19 O -0.139 6.139 20 C -0.487 4.487 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.837 3.163 25 H -0.173 1.173 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.199 4.199 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.118 0.882 32 H 0.257 0.743 33 H 0.192 0.808 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.043 17.285 -12.380 26.045 hybrid contribution 1.787 -0.527 0.600 1.957 sum -13.256 16.758 -11.780 24.399 Atomic orbital electron populations 1.22885 0.71465 1.07661 1.06454 1.44333 1.09225 1.03466 1.48420 1.22350 0.86713 0.94795 0.96424 1.20244 0.85984 0.90860 1.27699 1.42852 1.01968 1.00975 0.96316 1.94592 1.10501 1.79987 1.56667 1.94488 1.92963 0.97329 1.53598 1.21393 0.96986 0.92269 1.00310 1.19968 0.89003 0.88777 1.17384 1.16763 0.85466 0.83221 0.76534 1.90809 1.16759 1.84804 1.51971 1.45743 1.10511 1.05866 1.72955 1.20155 0.93103 0.77639 1.03584 1.19422 0.96560 0.97963 0.92343 1.21023 0.98508 1.02023 0.96918 1.21169 0.95057 0.95052 0.97607 1.21388 1.04374 1.06959 0.92601 1.19881 0.92930 0.93836 0.87306 1.83949 1.48188 1.53010 1.28765 1.21849 1.12852 1.18060 0.95943 0.87924 1.26565 1.01525 1.00194 0.93773 1.70183 1.43405 1.43082 0.99235 0.84545 0.75876 0.76298 0.79616 1.17302 1.19507 1.19489 1.20250 0.97449 1.03049 0.99188 0.88101 0.84995 0.88192 0.74342 0.80799 0.75040 0.90947 0.88305 0.83114 0.83452 0.86338 0.91891 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 10.66 127.77 1.36 1.69 16 2 N -0.38 -4.60 3.16 -534.31 -1.69 -6.29 16 3 C 0.14 1.56 11.06 83.48 0.92 2.49 16 4 C -0.16 -2.91 7.11 36.12 0.26 -2.66 16 5 N 0.07 1.65 4.45 -47.08 -0.21 1.44 16 6 O -0.21 -6.25 19.05 18.89 0.36 -5.89 16 7 O -0.17 -3.99 19.03 18.88 0.36 -3.64 16 8 C -0.08 -1.57 10.08 22.57 0.23 -1.34 16 9 C -0.04 -0.68 6.88 40.35 0.28 -0.41 16 10 C 0.59 12.50 7.77 86.45 0.67 13.17 16 11 O -0.56 -14.07 14.65 -4.34 -0.06 -14.13 16 12 N -0.70 -14.50 5.53 -470.80 -2.61 -17.10 16 13 C 0.18 4.07 5.80 85.63 0.50 4.57 16 14 C -0.06 -1.79 5.25 -19.88 -0.10 -1.90 16 15 C -0.17 -4.31 9.70 22.30 0.22 -4.10 16 16 C -0.07 -2.13 10.04 22.25 0.22 -1.90 16 17 C -0.23 -9.39 9.17 22.39 0.21 -9.19 16 18 C 0.11 5.18 6.65 22.58 0.15 5.33 16 19 O -0.23 -13.55 9.76 -22.83 -0.22 -13.77 16 20 C -0.41 -23.31 9.49 67.92 0.64 -22.67 16 21 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 22 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 23 N -0.92 -55.96 13.67 21.61 0.30 -55.67 16 24 Si 1.02 42.21 29.55 68.60 2.03 44.24 16 25 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 28 C -0.18 -6.98 9.64 22.39 0.22 -6.77 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.10 1.06 6.18 -2.39 -0.01 1.05 16 32 H 0.24 0.56 8.06 -2.91 -0.02 0.53 16 33 H 0.17 3.03 7.45 -2.91 -0.02 3.01 16 34 H 0.41 7.86 7.37 -92.71 -0.68 7.17 16 35 H 0.07 1.82 8.08 -2.38 -0.02 1.80 16 36 H 0.10 1.93 8.08 -2.38 -0.02 1.91 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -78.50 369.80 4.91 -73.58 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.43 Total: 21.73 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 6.23 Total: -24.50 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -4.21 Total: -77.62 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: 0.43 Total: -37.42 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -78.50 4.91 -73.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318448368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.665 kcal (2) G-P(sol) polarization free energy of solvation -78.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds